Mercurial > repos > xuebing > sharplabtool
comparison tools/data_source/ratmine.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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-1:000000000000 | 0:9071e359b9a3 |
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1 <?xml version="1.0"?> | |
2 <!-- | |
3 If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in | |
4 the initial response. If value of 'URL_method' is 'post', any additional params coming back in the | |
5 initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed. | |
6 --> | |
7 <tool name="Ratmine" id="ratmine" tool_type="data_source"> | |
8 <description>server</description> | |
9 <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> | |
10 <inputs action="http://ratmine.mcw.edu/ratmine/begin.do" check_values="false" method="get"> | |
11 <display>go to Ratmine server $GALAXY_URL</display> | |
12 <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=ratmine" /> | |
13 </inputs> | |
14 <request_param_translation> | |
15 <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> | |
16 <request_param galaxy_name="URL" remote_name="URL" missing="" /> | |
17 <request_param galaxy_name="dbkey" remote_name="db" missing="?" /> | |
18 <request_param galaxy_name="organism" remote_name="organism" missing="" /> | |
19 <request_param galaxy_name="table" remote_name="table" missing="" /> | |
20 <request_param galaxy_name="description" remote_name="description" missing="" /> | |
21 <request_param galaxy_name="name" remote_name="name" missing="Ratmine query" /> | |
22 <request_param galaxy_name="info" remote_name="info" missing="" /> | |
23 <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" > | |
24 <value_translation> | |
25 <value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect --> | |
26 </value_translation> | |
27 </request_param> | |
28 </request_param_translation> | |
29 <uihints minwidth="800"/> | |
30 <outputs> | |
31 <data name="output" format="txt" /> | |
32 </outputs> | |
33 <options sanitize="False" refresh="True"/> | |
34 </tool> |