Mercurial > repos > xuebing > sharplabtool
comparison tools/emboss_5/emboss_primersearch.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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-1:000000000000 | 0:9071e359b9a3 |
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1 <tool id="EMBOSS: primersearch81" name="primersearch" version="5.0.0"> | |
2 <description>Searches DNA sequences for matches with primer pairs</description> | |
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
4 <command>primersearch -seqall $input1 -infile $input2 -outfile $out_file1 -mismatchpercent $mismatchpercent -auto</command> | |
5 <inputs> | |
6 <param format="fasta" name="input1" type="data"> | |
7 <label>Main sequences</label> | |
8 </param> | |
9 <param format="data" name="input2" type="data"> | |
10 <label>Primer file</label> | |
11 </param> | |
12 <param name="mismatchpercent" size="4" type="text" value="0"> | |
13 <label>Allowed percent mismatch</label> | |
14 </param> | |
15 </inputs> | |
16 <outputs> | |
17 <data format="primersearch" name="out_file1" /> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="input1" value="2.fasta"/> | |
22 <param name="input2" value="emboss_primersearch.fasta"/> | |
23 <param name="mismatchpercent" value="0"/> | |
24 <output name="out_file1" file="emboss_primersearch_out.primersearch"/> | |
25 </test> | |
26 </tests> | |
27 <help> | |
28 | |
29 You can view the original documentation here_. | |
30 | |
31 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/primersearch.html | |
32 </help> | |
33 </tool> |