comparison tools/mytools/fimo2bed.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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1 <tool id="fimo2bed" name="fimo-to-bed">
2 <description>convert FIMO output to BED</description>
3 <command interpreter="python">fimo2bed.py $input $rc > $output</command>
4 <inputs>
5 <param name="input" format="txt" type="data" label="FIMO output file"/>
6 <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/>
7 </inputs>
8 <outputs>
9 <data format="bed" name="output" />
10 </outputs>
11 <help>
12
13 Only works if your original FIMO input fasta sequences have ids like::
14
15 mm9_chr15_99358448_99360448_-
16
17
18 </help>
19 </tool>