comparison convertEnsembl.xml @ 14:76e1b1b21cce default tip

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author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
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13:292186c14b08 14:76e1b1b21cce
1 <tool id="convertens" name="convert ensembl">
2 <description>to ucsc</description>
3 <command interpreter="python">convertEnsembl.py $input $output $skip </command>
4 <inputs>
5 <param name="input" format="interval" type="data" label="Original file"/>
6 <param name="skip" size="10" type="integer" value="0" label="Number of beginning lines to skip"/>
7 </inputs>
8 <outputs>
9 <data format="input" name="output" />
10 </outputs>
11 <help>
12
13 **What it does**
14
15 This tool convert ensembl based interval file to ucsc format: add 'chr' to chromosome number (column 1), and replace '1' and '-1' with '+' and '-' in column 6, respectively.
16
17 </help>
18 </tool>