diff tools/data_source/worm_modencode.xml @ 0:9071e359b9a3

Uploaded
author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/data_source/worm_modencode.xml	Fri Mar 09 19:37:19 2012 -0500
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+<?xml version="1.0"?>
+<tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source">
+    <description>server</description>
+    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
+    <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/worm" check_values="false" target="_top"> 
+        <display>go to modENCODE worm server $GALAXY_URL</display>
+        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" />
+    </inputs>
+    <request_param_translation>
+        <request_param galaxy_name="dbkey" remote_name="dbkey" missing="ce6" >
+            <value_translation>
+                <value galaxy_value="ce6" remote_value="worm" />
+            </value_translation>
+        </request_param>
+        <request_param galaxy_name="URL" remote_name="URL" missing="">
+            <append_param separator="&amp;" first_separator="?" join="=">
+                <value name="d" missing="" />
+                <value name="dbkey" missing="ce6" />
+                <value name="q" missing="" />
+                <value name="s" missing="" />
+                <value name="t" missing="" />
+            </append_param>
+        </request_param>
+        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
+        <request_param galaxy_name="data_type" remote_name="data_type" missing="auto" />
+    </request_param_translation>
+    <uihints minwidth="800"/>
+    <outputs>
+        <data name="output" format="txt" label="${tool.name} on $getVar( 'q', 'unknown position' )"/>
+    </outputs>
+    <options sanitize="False" refresh="True"/>
+</tool>