Mercurial > repos > xuebing > sharplabtool
diff tools/emboss_5/emboss_plotcon.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/emboss_5/emboss_plotcon.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,22 @@ +<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0"> + <!-- produces png file --> + <description>Plot quality of conservation of a sequence alignment</description> + <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> + <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command> + <inputs> + <param format="data" name="input1" type="data"> + <label>Sequence</label> + </param> + <param name="winsize" size="10" type="text" value="4"> + <label>Number of columns to average alignment quality over</label> + </param> + </inputs> + <outputs> + <data format="png" name="out_file1" /> + </outputs> + <help> + You can view the original documentation here_. + + .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html + </help> +</tool> \ No newline at end of file