diff tools/emboss_5/emboss_plotcon.xml @ 0:9071e359b9a3

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/emboss_5/emboss_plotcon.xml	Fri Mar 09 19:37:19 2012 -0500
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+<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0">
+  <!-- produces png file -->
+  <description>Plot quality of conservation of a sequence alignment</description>
+  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
+  <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command>
+  <inputs>
+    <param format="data" name="input1" type="data">
+      <label>Sequence</label>
+    </param>
+    <param name="winsize" size="10" type="text" value="4">
+      <label>Number of columns to average alignment quality over</label>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="png" name="out_file1" />
+  </outputs>
+  <help>
+    You can view the original documentation here_.
+    
+    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html
+  </help>
+</tool>
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