Mercurial > repos > xuebing > sharplabtool

diff tools/mytools/fastashuffle1.xml @ 0:9071e359b9a3

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author xuebing
date Fri, 09 Mar 2012 19:37:19 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/mytools/fastashuffle1.xml	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,17 @@
+<tool id="seqshuffle" name="shuffle sequences">
+  <description>preserving mono-nucleotide frequency</description>
+  <command>cat $input | fasta-shuffle-letters > $output  </command>
+  <inputs>
+     <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/>
+  </inputs>
+  <outputs>
+    <data format="fasta" name="output" />
+  </outputs>
+  <help>
+
+**Description**
+
+shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. 
+
+  </help>
+</tool>