diff tools/rgenetics/rgLDIndep_code.py @ 0:9071e359b9a3

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/rgenetics/rgLDIndep_code.py	Fri Mar 09 19:37:19 2012 -0500
@@ -0,0 +1,25 @@
+from galaxy import app
+import os, string, time
+
+def timenow():
+    """return current time as a string
+    """
+    return time.strftime('%d/%m/%Y %H:%M:%S', time.localtime(time.time()))
+
+
+
+def exec_after_process(app, inp_data, out_data, param_dict, tool, stdout, stderr):
+    name,data = out_data.items()[0]
+    basename = param_dict['title1']
+    killme = string.punctuation + string.whitespace
+    trantab = string.maketrans(killme,'_'*len(killme))
+    title = basename.encode().translate(trantab)
+    info = '%s filtered by rgLDIndep.py at %s' % (title,timenow())
+    data.file_name = data.file_name
+    data.metadata.base_name = title
+    data.name = '%s.pbed' % title
+    data.info = info
+    app.model.context.flush()
+
+
+