Mercurial > repos > xuebing > sharplabtool
diff tools/stats/generate_matrix_for_pca_lda.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/stats/generate_matrix_for_pca_lda.xml Fri Mar 09 19:37:19 2012 -0500 @@ -0,0 +1,48 @@ +<tool id="generate_matrix_for_pca_and_lda1" name="Generate A Matrix"> + <description>for using PC and LDA</description> + <command interpreter="perl">generate_matrix_for_pca_lda.pl $input_1 $input_2 $output</command> + + <inputs> + <param format="tabular" name="input_1" type="data" label="Source file First: a matrix (samples/observations in rows and variables/features in columns)"> </param> + <param format="tabular" name="input_2" type="data" label="Source file Second: a table (samples/observations with response/class label)"> </param> + </inputs> + + <outputs> + <data format="tabular" name="output" /> + </outputs> + + <tests> + <test> + <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/> + <param name="input_2" value="matrix_generator_for_pc_and_lda_input_2.tabular"/> + <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/> + </test> + </tests> + + <help> + +.. class:: infomark + +**What it does** + +This tool consists of a module to generate a matrix to be used for running the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873) + +*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151* + +----- + +**Example** + +- Input file (Source file First) + +.. image:: ./static/images/tools/lda/first_matrix_generator_example_file.png + + +- Input file (Source file Second) + +.. image:: ./static/images/tools/lda/second_matrix_generator_example_file.png + + +</help> + +</tool>