diff bedsort.xml @ 14:76e1b1b21cce default tip

Deleted selected files
author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
children
line wrap: on
line diff
--- a/bedsort.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,23 +0,0 @@
-<tool id="bedsort" name="sort">
-  <description>a interval file by chr and start</description>
-  <command> head -n $skip $input > $output
-  &amp;&amp; tail -n+`expr $skip + 1` $input | sort -k1,1 -k2,2g >> $output    
-  </command>
-  <inputs>
-     <param name="input" type="data" format="bed" label="Input interval file"/>
-     <param name="skip" type="integer" value="0" label="top lines to skip" help="output directly, not sorted"/>
-  </inputs>
-  <outputs>
-    <data format="bed" name="output" />
-  </outputs>
-  <help>
-
-**Description**
-
-Unix command used::
-
-    head -n $skip $input > $output
-    tail -n+`expr $skip + 1` $input | sort -k1,1 -k2,2g >> $output
-
-  </help>
-</tool>