diff closestBed.xml @ 14:76e1b1b21cce default tip

Deleted selected files

--- a/closestBed.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,32 +0,0 @@
-<tool id="closestbed" name="closestBed">
-  <description>find closest features</description>
-  <command>closestBed -a $inputa -b $inputb $strandness -d $no -t $tie> $output_data
-  </command>
-  <inputs>
-      <param name="inputa" type="data" format="interval,bam,bed,gff,vcf" label="Input A (-a)"/>
-      <param name="inputb" type="data" format="interval,bam,bed,gff,vcf" label="Input B (-b)"/>          
-      <param name="strandness" type="select" label="Strand requirement" >
-		<option value="" selected="true"> none </option>
-        <option value="-s" > -s: closest feature on the same strand</option>
-        <option value="-S" > -S: closest feature on the opposite strand </option>
-      </param>
-      
-    <param name="no" label="Only look for non-overlaping features" type="boolean" truevalue="-no" falsevalue="" checked="False"/>
-              <param name="tie" type="select" label="Strand requirement" >
-		<option value="all" selected="true"> report all ties </option>
-        <option value="first" > report the first that occurred</option>
-        <option value="last" > report the last that occurred </option>
-      </param>
-        </inputs>
-  <outputs>
-    <data format="input" name="output_data"/> 
-  </outputs>
-  <help>
-
-**What it does**
-
-This is a wrapper for closestBed.
-
-  </help>
-</tool>
-