Mercurial > repos > xuebing > sharplabtool

diff convertEnsembl.xml @ 14:76e1b1b21cce default tip

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author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
children
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--- a/convertEnsembl.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-<tool id="convertens" name="convert ensembl">
-  <description>to ucsc</description>
-  <command interpreter="python">convertEnsembl.py $input $output $skip  </command>
-  <inputs>
-    <param name="input" format="interval" type="data" label="Original file"/>
-    <param name="skip" size="10" type="integer" value="0" label="Number of beginning lines to skip"/>
-  </inputs>
-  <outputs>
-    <data format="input" name="output" />
-  </outputs>
-  <help>
-
-**What it does**
-
-This tool convert ensembl based interval file to ucsc format: add 'chr' to chromosome number (column 1), and replace '1' and '-1' with '+' and '-' in column 6, respectively. 
-
- </help>
-</tool>