Mercurial > repos > xuebing > sharplabtool

diff fimo2bed.xml @ 14:76e1b1b21cce default tip

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author xuebing
date Tue, 13 Mar 2012 19:05:10 -0400
parents 292186c14b08
children
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--- a/fimo2bed.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,19 +0,0 @@
-<tool id="fimo2bed" name="fimo-to-bed">
-  <description>convert FIMO output to BED</description>
-  <command interpreter="python">fimo2bed.py $input $rc > $output</command>
-  <inputs>
-    <param name="input" format="txt" type="data" label="FIMO output file"/>
-    <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/>
-  </inputs>
-  <outputs>
-    <data format="bed" name="output" />
-  </outputs>
-  <help>
-
-  Only works if your original FIMO input fasta sequences have ids like:: 
-  
-    mm9_chr15_99358448_99360448_-
-  
-  
-  </help>
-</tool>