Mercurial > repos > xuebing > sharplabtool
view mytools/fastashuffle1.xml @ 9:87eb5c5ddfe9
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author | xuebing |
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date | Fri, 09 Mar 2012 20:01:43 -0500 |
parents | f0dc65e7f6c0 |
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<tool id="seqshuffle" name="shuffle sequences"> <description>preserving mono-nucleotide frequency</description> <command>cat $input | fasta-shuffle-letters > $output </command> <inputs> <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/> </inputs> <outputs> <data format="fasta" name="output" /> </outputs> <help> **Description** shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. </help> </tool>