view tools/data_source/bx_browser.xml @ 0:9071e359b9a3

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<?xml version="1.0"?>
<!--
    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
-->
<tool name="BX main" id="bx_browser" tool_type="data_source">
    <description>browser</description>
    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
    <inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get">
        <display>go to BX Browser $GALAXY_URL</display>
        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
        <param name="tool_id" type="hidden" value="bx_browser" />
        <param name="sendToGalaxy" type="hidden" value="1" />
        <param name="hgta_compressType" type="hidden" value="none" />
        <param name="hgta_outputType" type="hidden" value="bed" />
    </inputs>
    <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
        <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
        <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
        <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
        <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
        <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
            <value_translation>
                <value galaxy_value="tabular" remote_value="primaryTable" />
                <value galaxy_value="tabular" remote_value="selectedFields" />
                <value galaxy_value="wig" remote_value="wigData" />
                <value galaxy_value="interval" remote_value="tab" />
                <value galaxy_value="html" remote_value="hyperlinks" />
                <value galaxy_value="fasta" remote_value="sequence" />
            </value_translation>
        </request_param>
    </request_param_translation>
    <uihints minwidth="800"/>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <options sanitize="False" refresh="True"/>
</tool>