view tools/solid_tools/solid_qual_boxplot.xml @ 0:9071e359b9a3

Uploaded

<tool id="solid_qual_boxplot" name="Draw quality score boxplot" version="1.0.0">
	<description>for SOLiD data</description>
	
	<command interpreter="bash">qualsolid_boxplot_graph.sh -t '$input.name' -i $input -o $output</command>
	
	<inputs>
		<param format="txt" name="input" type="data" label="Statistics report file (output of 'Quality Statistics for SOLiD data' tool)" />
	</inputs>

	<outputs>
		<data format="png" name="output" metadata_source="input" />
	</outputs>
<help>

**What it does**

Creates a boxplot graph for the quality scores in the library.

.. class:: infomark

**TIP:** Use the **Quality Statistics for SOLiD data** tool to generate the report file needed for this tool.

-----

**Output Example**

* Black horizontal lines are medians
* Rectangular red boxes show the Inter-quartile Range (IQR) (top value is Q3, bottom value is Q1)
* Whiskers show outliers at max. 1.5*IQR


.. image:: ./static/images/solid_qual.png

------

This tool is based on `FASTX-toolkit`__ by Assaf Gordon.

 .. __: http://hannonlab.cshl.edu/fastx_toolkit/
</help>
</tool>