view tools/emboss_5/emboss_infoseq.xml @ 1:cdcb0ce84a1b

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<tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0">
  <!-- info contains file information always -->
  <description>Displays some simple information about sequences</description>
  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
  <command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
  $pgc -description $description -auto</command>
  <inputs>
    <param format="data" name="input1" type="data">
      <label>Sequences</label>
    </param>
    <param name="html_out1" type="select">
      <label>Format output as an HTML table</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="heading" type="select">
      <label>Display column headings</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="usa" type="select">
      <label>Display the USA of the sequence</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="disname" type="select">
      <label>Display 'name' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="accession" type="select">
      <label>Display 'accession' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="gi" type="select">
      <label>Display 'GI' column</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="version" type="select">
      <label>Display 'version' column</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="type" type="select">
      <label>Display 'type' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="length" type="select">
      <label>Display 'length' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="pgc" type="select">
      <label>Display 'percent GC content' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="description" type="select">
      <label>Display 'description' column</label>
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data format="txt" name="out_file1" />
  </outputs>
  <code file="emboss_format_corrector.py" />
  <help>
    You can view the original documentation here_.
    
    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html
  </help>
</tool>