view tools/mytools/fimo2bed.xml @ 1:cdcb0ce84a1b

author xuebing
date Fri, 09 Mar 2012 19:45:15 -0500
parents 9071e359b9a3
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<tool id="fimo2bed" name="fimo-to-bed">
  <description>convert FIMO output to BED</description>
  <command interpreter="python"> $input $rc > $output</command>
    <param name="input" format="txt" type="data" label="FIMO output file"/>
    <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/>
    <data format="bed" name="output" />

  Only works if your original FIMO input fasta sequences have ids like::