using FIMO fimo
#if $background_select.bg_select == "fromfile":
-bgfile $bgfile
#end if
$norc --output-pthresh $pth --verbosity 1 $motif $database
&& mv fimo_out/fimo.html ${html_outfile}
&& mv fimo_out/fimo.txt ${txt_outfile}
&& rm -rf fimo_out
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**What it does**
This tool uses FIMO to find matches of a motif in a fasta file. See more details:
http://meme.sdsc.edu/meme/fimo-intro.html