Mercurial > repos > yating-l > gbtofasta

view test-data/Gallus_gallus_RefSeq.gb @ 0:9573618e2afe draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit f3fb68f4faf6766eef195b8b36157035ab95e7b1
author yating-l
date Wed, 12 Apr 2017 17:43:55 -0400
parents
children
line wrap: on
line source

LOCUS       NM_001199713            3613 bp    mRNA    linear   VRT 27-JAN-2017
DEFINITION  Gallus gallus uncharacterized LOC423300 (NOVA1), transcript variant
            2, mRNA.
ACCESSION   NM_001199713
VERSION     NM_001199713.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3613)
  AUTHORS   Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
            J.
  TITLE     ESTs from brain and testis of White Leghorn and red junglefowl:
            annotation, bioinformatic classification of unknown transcripts and
            analysis of expression levels
  JOURNAL   Cytogenet. Genome Res. 111 (1), 79-87 (2005)
   PUBMED   16093725
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DN851166.1, CO420756.1 and AADN04000014.1.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon in the 3' coding region, compared to variant 1. The resulting
            protein (isoform 2) is shorter, compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CO420756.1, CD215801.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201366, SAMEA2201377
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                DN851166.1         226-320
            96-706              CO420756.1         1-611
            707-3613            AADN04000014.1     5941293-5944199     c
FEATURES             Location/Qualifiers
     source          1..3613
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Leghorn"
     gene            1..3613
                     /gene="NOVA1"
                     /note="uncharacterized LOC423300"
                     /db_xref="CGNC:7484"
                     /db_xref="GeneID:423300"
     CDS             95..1546
                     /gene="NOVA1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     RNA-binding protein Nova-1; neuro-oncological ventral
                     antigen 1; NOVA alternative splicing regulator 1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform 2"
                     /protein_id="NP_001186642.1"
                     /db_xref="CGNC:7484"
                     /db_xref="GeneID:423300"
                     /translation="MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNT
                     GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI
                     QGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG
                     LIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQ
                     EDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAF
                     PAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAA
                     ANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKS
                     TDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTI
                     TGTPAATQAAQYLITQRITYEQGVRAANPQKVG"
ORIGIN      
        1 cccttcctct tccttcctcc tcctcctccc ccttccctcc ctgccccccc aacaccgaag
       61 ggaagagaca attctcctcc gagcagcagc aaacatgatg gcggcagctc ccatccagca
      121 gaacgggact cacaccgggg ttcccataga cctggacccg ccggactccc ggaaaagacc
      181 gctggaagcc ccccccgaag cgggcagcac caagaggacc aacacgggcg aggatggcca
      241 atattttcta aaggtcctca tacctagtta tgctgctgga tctataattg ggaagggagg
      301 acagacaatt gttcagttgc agaaagagac cggggccacc atcaagctgt ctaaatccaa
      361 agatttttac ccaggtacta cggagcgcgt gtgtctgatc cagggaacag ttgaagcact
      421 aaatgcagtt catggcttca ttgcagagaa gattcgagaa atgcctcaaa atgtggccaa
      481 gacagagcct gtcagcatcc tacaacctca gaccactgtt aatccagacc gcatcaaaca
      541 agtaaagatt atagttccca acagcacagc aggtctgata atagggaagg gaggtgctac
      601 agtgaaggct ataatggagc agtcaggggc ttgggtgcag ctttcccaga aacctgatgg
      661 gatcaacttg caagagaggg ttgtcactgt gagtggagaa cctgaacaaa accgaaaagc
      721 tgtcgaactt atcatccaga agatacaaga ggatccacag agtggcagct gtctcaatat
      781 cagttatgcc aatgtcacag gtccagtggc caattccaat ccaaccggat ctccttatgc
      841 aaacactgct gaagtgttac caactgctgc agctgctgca gggctattag gacatgctaa
      901 ccttgctgga gtggcagcct ttccagcagt tttatctggc tttacaggca atgacctggt
      961 ggccatcacc tctgcactta atacattagc cagctatgga tataatctca atacattagg
     1021 tttaggccta agtcaggcag cagctacagg ggctttggct gcagcagctg ccagtgccaa
     1081 cccagcagca gcagcagcca acttgttggc cacctatgcg agtgaagcct cagccagtgg
     1141 cagcactgct ggtggtacgg cggggacatt tgcattaggt agcctggctg ctgctactgc
     1201 tgcaaccaat ggatattttg gagctgcttc tcccctagct gccagtgcca tcctaggaac
     1261 agaaaaatcc acagatggat caaaggatgt agttgaaata gcagtgccag aaaacttagt
     1321 tggtgcaata cttggaaaag gagggaaaac attagttgaa taccaggagt tgactggtgc
     1381 aaggatacag atctctaaaa agggagaatt cgtacctggc acaagaaatc gcaaggtaac
     1441 cattactgga acaccagctg caacccaggc cgcacagtat ttaattacac aacggatcac
     1501 atatgagcaa ggagttcggg ctgccaatcc acagaaagtg ggttgagagc ccctgttaaa
     1561 catgagattg ttttaacccc tccttaccct attttcaaga aggatgtact gtactttgca
     1621 gaagtgaagt ttttctgtta ttaatatata attatgcaaa tgaatgcgac tatgttgaca
     1681 atgtgtatat gtaaatataa tgtgttttac cagatgtttc atagagagaa ttttttcttg
     1741 atctgttttg ttctctatac tttgcttgtg tatatttgtc agaggtgttt ctagtgtaag
     1801 atttaagcct gccattttac cagcattatt gtagtttaat gattgaatgt agacagggat
     1861 atgcgtatag ttttcagtat tagttctaga taacactaaa ttaactactg ttaggttggg
     1921 tatggtgggg tcagtgacct aaaatggagt gaggccaaag cactgtcatg tcagtcttac
     1981 ttcctgctta gggcacagtg aagtaggaaa caatattttg aaaataagtt ttaaaattta
     2041 aaatgatcaa aaagcaatat agttgcataa aagcactgta aaatatttaa aaaggttaaa
     2101 actgtggaaa attatattgg taagtttaca gatcaataaa agcacctgtt ctccatctga
     2161 actagacaat ggaaataatg ctgcatgctg gccatggccc attcttcacc atttgtaagt
     2221 tcaacaaaag ttctcacatg gagtcccacc tctaactgag gtttgtacat ttgtttttaa
     2281 gcactgaaat cactactgat cccatcgcct ggccagtaga acagtcatta ctccattaac
     2341 attctcactg tttagacaca taactgtggt acagtgtatt ggaaatttta tatacaaaaa
     2401 gtgaaagtgc caacaaatta ttgatagctg ataatgtttc attatctgca actgcttgat
     2461 aagtatgttg cattttaaga gcttataatt gtgtataatt tgttaacact agaaacctat
     2521 tagtattgtg aatgtagatt ttactgtgaa gctatctgtg atttagctgt ttgctcccat
     2581 gaaggagtct ttgcagcatg gcgctagcag ccaatgcagt ttctaatact cagtaatttg
     2641 catgttttgt ggagcatttt tatgtcacca accagacagt atttcctgca tgcttattta
     2701 gaagaggcag ttttccttga gaggtagtgg tctacctttg ccaggctttt tgacaggtca
     2761 tttcagagta agcctttgtt cccaagaccc aacaactgtc accctcttct gtacctctcc
     2821 tgagtgccaa ctgcccaggc cattgaccca ccatctgtta acctctgagt ttgcccgctc
     2881 aaggccactc ataggggcat ccataaccaa gcacctcctc atgctgtgca tgcagtctta
     2941 aattcaatgg acaaaaataa aatgctggct acctctggat catctggctg agcaactgaa
     3001 tttcaaaaga gaattacttc catctcaact tcaacccatt gattacgtcc atcctagcaa
     3061 gctaaatggc atcccagctg ctcctttctg tgcaaccaat taaagaacaa tgagtgtgat
     3121 gctccatgtc tgaatttcgt ccagcctctc tctgaactgt gatctttgtc ctcatgaact
     3181 ttcccttttg ttcattgaac tatatggact cttcatttca tattgattta ctgtgcaatt
     3241 tacttttgga cattgagaac ttgaaataat tccctgatcc cttccccctt cactattaat
     3301 aactcatttc tgtcaaactg taagagtaga ctcatttttt ttagttttta acattggatt
     3361 gttatttcat ttagagttct ctatctctaa atatttaatt tagagaatga ttaaaaaggg
     3421 aatgatatgc ttgtttaaaa tgaaagagaa aagctgtagt aaactgtgtt acttggtaat
     3481 gactatttat cgtcgatact ctgtagctgt gtaagttttg acaaatagtg tatctcgtga
     3541 aatcagtggt tagcattgcc gctattatat ttactcattt tatcattata aatgtgctta
     3601 gttcatcatg tag
//

LOCUS       NM_001199712            3685 bp    mRNA    linear   VRT 27-JAN-2017
DEFINITION  Gallus gallus uncharacterized LOC423300 (NOVA1), transcript variant
            1, mRNA.
ACCESSION   NM_001199712 XM_001232692 XM_001232710 XM_421219
VERSION     NM_001199712.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
            J.
  TITLE     ESTs from brain and testis of White Leghorn and red junglefowl:
            annotation, bioinformatic classification of unknown transcripts and
            analysis of expression levels
  JOURNAL   Cytogenet. Genome Res. 111 (1), 79-87 (2005)
   PUBMED   16093725
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DN851166.1, CN222734.1 and AADN04000014.1.
            On or before Dec 12, 2010 this sequence version replaced
            gi:118091782, gi:118091783, gi:118091785.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CN222734.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               DN851166.1         226-347
            123-749             CN222734.1         47-673
            750-3685            AADN04000014.1     5941293-5944228     c
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Leghorn"
     gene            1..3685
                     /gene="NOVA1"
                     /note="uncharacterized LOC423300"
                     /db_xref="CGNC:7484"
                     /db_xref="GeneID:423300"
     CDS             95..1618
                     /gene="NOVA1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     RNA-binding protein Nova-1; neuro-oncological ventral
                     antigen 1; NOVA alternative splicing regulator 1"
                     /codon_start=1
                     /product="RNA-binding protein Nova-1 isoform 1"
                     /protein_id="NP_001186641.1"
                     /db_xref="CGNC:7484"
                     /db_xref="GeneID:423300"
                     /translation="MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNT
                     GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI
                     QGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKS
                     SPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQE
                     RVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTA
                     EVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGL
                     GLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAAT
                     AATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQEL
                     TGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG"
ORIGIN      
        1 cccttcctct tccttcctcc tcctcctccc ccttccctcc ctgccccccc aacaccgaag
       61 ggaagagaca attctcctcc gagcagcagc aaacatgatg gcggcagctc ccatccagca
      121 gaacgggact cacaccgggg ttcccataga cctggacccg ccggactccc ggaaaagacc
      181 gctggaagcc ccccccgaag cgggcagcac caagaggacc aacacgggcg aggatggcca
      241 atattttcta aaggtcctca tacctagtta tgctgctgga tctataattg ggaagggagg
      301 acagacaatt gttcagttgc agaaagagac cggggccacc atcaagctgt ctaaatccaa
      361 agatttttac ccaggtacta cggagcgcgt gtgtctgatc cagggaacag ttgaagcact
      421 aaatgcagtt catggcttca ttgcagagaa gattcgagaa atgcctcaaa atgtggccaa
      481 gacagagcct gtcagcatcc tacaacctca gaccactgtt aatccagacc gcatcaaaca
      541 aacattgcca tcttccccaa ctaccaccaa gtcctctcca tctgatccca tgaccacctc
      601 cagagccaat caggtaaaga ttatagttcc caacagcaca gcaggtctga taatagggaa
      661 gggaggtgct acagtgaagg ctataatgga gcagtcaggg gcttgggtgc agctttccca
      721 gaaacctgat gggatcaact tgcaagagag ggttgtcact gtgagtggag aacctgaaca
      781 aaaccgaaaa gctgtcgaac ttatcatcca gaagatacaa gaggatccac agagtggcag
      841 ctgtctcaat atcagttatg ccaatgtcac aggtccagtg gccaattcca atccaaccgg
      901 atctccttat gcaaacactg ctgaagtgtt accaactgct gcagctgctg cagggctatt
      961 aggacatgct aaccttgctg gagtggcagc ctttccagca gttttatctg gctttacagg
     1021 caatgacctg gtggccatca cctctgcact taatacatta gccagctatg gatataatct
     1081 caatacatta ggtttaggcc taagtcaggc agcagctaca ggggctttgg ctgcagcagc
     1141 tgccagtgcc aacccagcag cagcagcagc caacttgttg gccacctatg cgagtgaagc
     1201 ctcagccagt ggcagcactg ctggtggtac ggcggggaca tttgcattag gtagcctggc
     1261 tgctgctact gctgcaacca atggatattt tggagctgct tctcccctag ctgccagtgc
     1321 catcctagga acagaaaaat ccacagatgg atcaaaggat gtagttgaaa tagcagtgcc
     1381 agaaaactta gttggtgcaa tacttggaaa aggagggaaa acattagttg aataccagga
     1441 gttgactggt gcaaggatac agatctctaa aaagggagaa ttcgtacctg gcacaagaaa
     1501 tcgcaaggta accattactg gaacaccagc tgcaacccag gccgcacagt atttaattac
     1561 acaacggatc acatatgagc aaggagttcg ggctgccaat ccacagaaag tgggttgaga
     1621 gcccctgtta aacatgagat tgttttaacc cctccttacc ctattttcaa gaaggatgta
     1681 ctgtactttg cagaagtgaa gtttttctgt tattaatata taattatgca aatgaatgcg
     1741 actatgttga caatgtgtat atgtaaatat aatgtgtttt accagatgtt tcatagagag
     1801 aattttttct tgatctgttt tgttctctat actttgcttg tgtatatttg tcagaggtgt
     1861 ttctagtgta agatttaagc ctgccatttt accagcatta ttgtagttta atgattgaat
     1921 gtagacaggg atatgcgtat agttttcagt attagttcta gataacacta aattaactac
     1981 tgttaggttg ggtatggtgg ggtcagtgac ctaaaatgga gtgaggccaa agcactgtca
     2041 tgtcagtctt acttcctgct tagggcacag tgaagtagga aacaatattt tgaaaataag
     2101 ttttaaaatt taaaatgatc aaaaagcaat atagttgcat aaaagcactg taaaatattt
     2161 aaaaaggtta aaactgtgga aaattatatt ggtaagttta cagatcaata aaagcacctg
     2221 ttctccatct gaactagaca atggaaataa tgctgcatgc tggccatggc ccattcttca
     2281 ccatttgtaa gttcaacaaa agttctcaca tggagtccca cctctaactg aggtttgtac
     2341 atttgttttt aagcactgaa atcactactg atcccatcgc ctggccagta gaacagtcat
     2401 tactccatta acattctcac tgtttagaca cataactgtg gtacagtgta ttggaaattt
     2461 tatatacaaa aagtgaaagt gccaacaaat tattgatagc tgataatgtt tcattatctg
     2521 caactgcttg ataagtatgt tgcattttaa gagcttataa ttgtgtataa tttgttaaca
     2581 ctagaaacct attagtattg tgaatgtaga ttttactgtg aagctatctg tgatttagct
     2641 gtttgctccc atgaaggagt ctttgcagca tggcgctagc agccaatgca gtttctaata
     2701 ctcagtaatt tgcatgtttt gtggagcatt tttatgtcac caaccagaca gtatttcctg
     2761 catgcttatt tagaagaggc agttttcctt gagaggtagt ggtctacctt tgccaggctt
     2821 tttgacaggt catttcagag taagcctttg ttcccaagac ccaacaactg tcaccctctt
     2881 ctgtacctct cctgagtgcc aactgcccag gccattgacc caccatctgt taacctctga
     2941 gtttgcccgc tcaaggccac tcataggggc atccataacc aagcacctcc tcatgctgtg
     3001 catgcagtct taaattcaat ggacaaaaat aaaatgctgg ctacctctgg atcatctggc
     3061 tgagcaactg aatttcaaaa gagaattact tccatctcaa cttcaaccca ttgattacgt
     3121 ccatcctagc aagctaaatg gcatcccagc tgctcctttc tgtgcaacca attaaagaac
     3181 aatgagtgtg atgctccatg tctgaatttc gtccagcctc tctctgaact gtgatctttg
     3241 tcctcatgaa ctttcccttt tgttcattga actatatgga ctcttcattt catattgatt
     3301 tactgtgcaa tttacttttg gacattgaga acttgaaata attccctgat cccttccccc
     3361 ttcactatta ataactcatt tctgtcaaac tgtaagagta gactcatttt ttttagtttt
     3421 taacattgga ttgttatttc atttagagtt ctctatctct aaatatttaa tttagagaat
     3481 gattaaaaag ggaatgatat gcttgtttaa aatgaaagag aaaagctgta gtaaactgtg
     3541 ttacttggta atgactattt atcgtcgata ctctgtagct gtgtaagttt tgacaaatag
     3601 tgtatctcgt gaaatcagtg gttagcattg ccgctattat atttactcat tttatcatta
     3661 taaatgtgct tagttcatca tgtag
//

LOCUS       NM_001030697            4759 bp    mRNA    linear   VRT 24-JAN-2017
DEFINITION  Gallus gallus phosphoinositide-3-kinase regulatory subunit 5
            (PIK3R5), mRNA.
ACCESSION   NM_001030697 XM_415588
VERSION     NM_001030697.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4759)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ720866.1.
            On Aug 8, 2005 this sequence version replaced gi:50757638.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720866.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4759
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="18"
                     /map="18"
                     /breed="Leghorn"
     gene            1..4759
                     /gene="PIK3R5"
                     /note="phosphoinositide-3-kinase regulatory subunit 5"
                     /db_xref="CGNC:14629"
                     /db_xref="GeneID:417319"
     misc_feature    91..93
                     /gene="PIK3R5"
                     /note="upstream in-frame stop codon"
     CDS             100..2745
                     /gene="PIK3R5"
                     /note="PI3-kinase regulatory subunit 5;
                     phosphoinositide-3-kinase, regulatory subunit 5, p101"
                     /codon_start=1
                     /product="phosphoinositide 3-kinase regulatory subunit 5"
                     /protein_id="NP_001025868.1"
                     /db_xref="CGNC:14629"
                     /db_xref="GeneID:417319"
                     /translation="MQHTTCTEDRIYHALERCLHGLSRDAVSSRWAAGLCLNCWSLQE
                     LVSRDAGNYLILVEKILGKAREVQEKCDYDLVMPLALLFYYAVLYAPHIPPDSELLLK
                     AASIYHSFLTWPVPYCDVFRELLTFISDELKAPGISFQRLVRTEQGLPVKNYQSSTVT
                     VLLLNRSEVQSEFLSIAEKLSSTEPPRHATLVLLLEHLYQVTFGTRCDLGSLHHLLKA
                     KTLEELSEIYTSAAEAQEIAAASSDPVLARERLQSALRDIAGAAALPTIAGDAQPRRL
                     QPIPIPTSRCYTYSWDQDNFDVLNDVLSKECSVVEPVASENEEDEEEEEEDVETDGCS
                     PERDSLLSPISSISKDSVYSALSEDGPKHSCVSLFSSSKDSISELTVVSKKSLRSFVS
                     SLKDCMDSGYAEDSDESSLDTLGRPELKVEKTHHKYRHTLTNKIYKLFKSKSQLVLRR
                     DLKDCVDTGSLPLRRAESLCHPQAKPRIPARSRRAHSLPQHGLGQKLQTPQTPQLLSL
                     PRRPFLSYDEDAKVATMRVVVFGSDRISGKVARAYSNLRLKESTCPTLTRYFKLQFFY
                     VPVKRSCLLPAALLMHPPPSPSDLQLRALAQAEPTLAGAESSTNDISHYIGMLDPWYE
                     RNVLGLMNLPMDVLCQSAKPEAEPQEDSREQLPILADMILYYCRFATRPVLLQLYQTE
                     LTFIGGEKMTEVFIHSLELGHSAATRAIKASGPGSKRLGIDGDREAIPLTLQIAYSKT
                     AISGRSQWNDVEKVCTSVNLSKACKKYEELASKTECLNLTMTEVVKRQNSKSKKSFNQ
                     LSVSQIKVDKVQIIGVQSSFAVCLDQDEQKILQSVTRCEISVCYRPRDSDPLALRRSS
                     LTPQDPSEFHSLLCLPISTFSGALP"
     misc_feature    166..396
                     /gene="PIK3R5"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZIB8.1);
                     Region: Heterodimerization. {ECO:0000250}"
     misc_feature    2068..2370
                     /gene="PIK3R5"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZIB8.1);
                     Region: Interaction with G beta gamma proteins.
                     {ECO:0000250}"
ORIGIN      
        1 gccgcccggc ggggagcggc gcggagcgga gcccggcggg gcgcggcgag gatgggcagg
       61 gggccccggc ggctgccgcc ctccaggaga tgaattaaaa tgcagcacac cacgtgcaca
      121 gaggacagga tctatcatgc actggagaga tgtctgcacg ggcttagcag agatgctgtc
      181 tccagcagat gggctgcagg gctgtgcctg aactgctgga gcctgcagga gctggtgagc
      241 agggatgcag gtaactacct catcctggtg gagaaaatcc tcggcaaggc cagggaggtg
      301 caggagaagt gtgactacga cctggtgatg cccctggccc tgcttttcta ctacgcggtc
      361 ctctatgctc cccacatccc accagactcc gagctgctcc tgaaagctgc cagcatctac
      421 cacagcttcc tcacctggcc cgtgccctac tgcgacgtct tccgtgagct gctcaccttc
      481 atcagtgatg agctcaaggc gccagggatt tccttccaga ggttggtgag gacggagcag
      541 gggctgcctg tgaagaacta ccagagctcc actgtgacgg tgctgctgct gaaccgctcc
      601 gaggtgcaga gtgagttcct ctccatcgca gagaagctga gcagcactga gcccccccgg
      661 cacgccacgc tcgtcctgct gctggagcac ctctaccagg tcaccttcgg cacccgctgc
      721 gacctgggca gcctgcacca cctcctgaag gccaagacac tggaagagct ctctgagatc
      781 tacaccagcg ctgctgaagc gcaggagatc gcagccgcca gcagtgaccc tgtgttggcc
      841 cgggagcggc tgcagagcgc tctgcgggac attgccgggg cagcagcact tcctaccatt
      901 gcaggagatg cgcagccccg caggctgcag cccatcccca tccctacttc gcgctgctac
      961 acctacagct gggaccagga taactttgat gtcctcaatg atgtcctcag caaggagtgc
     1021 agtgttgttg agcctgtggc ctcagagaat gaggaggacg aggaagagga ggaggaggat
     1081 gtggaaacag acggctgttc cccagagagg gactcgctgc tgtcccccat ctcctccatt
     1141 tccaaggact ccgtgtactc agcgctgtca gaggatggac ccaagcactc ctgcgtgtcc
     1201 ctcttcagca gctccaagga ctccatctca gagctgacgg tggtctccaa gaagtccttg
     1261 aggtcttttg tctccagcct gaaggactgc atggacagcg ggtacgcaga ggacagcgac
     1321 gagagctccc tggacacgct tgggcggccg gagctgaagg tggagaagac ccaccacaaa
     1381 tacagacaca cgctgaccaa caagatctac aagctcttca agagcaaaag ccagctggtc
     1441 ctgaggagag acctgaagga ctgtgtggat acaggctcgc tcccactgcg ccgtgctgag
     1501 agcctgtgcc acccccaggc caagccccgc atcccggcac gctcccggcg cgctcactca
     1561 ttgccacagc acgggctggg ccagaagctg cagaccccgc agaccccgca gctgctcagc
     1621 ctgccccgcc ggcccttcct cagctacgac gaggatgcca aagtggccac catgcgcgtg
     1681 gtggtcttcg gctccgaccg catctcaggg aaagtagccc gagcctacag caacctgagg
     1741 ctgaaggaga gcacctgccc tacactgaca aggtacttca agctgcagtt tttctacgtc
     1801 cccgtgaaga ggagctgcct gctgccagca gccctgctga tgcatcctcc tccatcccca
     1861 agcgacctgc agctccgcgc cttggcacag gcggagccca ccttggctgg ggcggagagc
     1921 agcaccaatg acatctccca ctacatcggc atgttggacc catggtacga gcggaacgtt
     1981 ctggggctga tgaacctgcc catggatgtc ctgtgtcagt ctgccaagcc tgaggctgag
     2041 ccccaggagg actcccggga gcagctgccc atcctggccg acatgatcct ctactactgc
     2101 cgctttgcca cacgccccgt cctgctgcag ctctaccaga ccgagctcac cttcataggg
     2161 ggggagaaga tgaccgaagt cttcatccac tccctggagc tgggccactc ggcggccacg
     2221 cgggccatca aggcgtcagg tccgggcagc aaaaggctgg gcatagatgg agacagagaa
     2281 gcaatcccac taacactaca gatcgcctac agcaagacag ccatcagtgg aaggagtcag
     2341 tggaacgatg ttgagaaggt ctgcacatct gttaacctca gcaaagcctg caagaagtac
     2401 gaagagctgg cctcgaagac agagtgtctc aacttgacca tgacagaggt ggttaaaagg
     2461 caaaactcca aatccaaaaa aagtttcaat cagctcagtg tgtcccagat caaggtagac
     2521 aaagtccaga ttattggtgt ccagtcctcc tttgccgtgt gcctggatca ggatgagcag
     2581 aagatcctgc agagtgtaac caggtgtgag atctccgtgt gctacagacc cagggacagc
     2641 gatccccttg cactgagaag gtcctctttg actccccagg acccctccga gtttcattct
     2701 ctcctgtgtt tacccatttc caccttcagt ggagcactgc catagaagaa ccctgtgccc
     2761 tcatcggacc aggcatgcat tcaacgccaa aatgaagctg tcctgctgga ggccagccac
     2821 gcttgtccaa gacatcctgt gatctgaagc catagtgtgg tgattgaact gctcctgttg
     2881 tgagcttagc ccgtccttgg ggaatgctgt tagtgtcagg ctctggtaca gctcaagatt
     2941 ccctgggagg aaagtgagat ctccacctgg ttcagtaggc tgccaacacc taactgagag
     3001 gacaaggcaa agacagcgac gttttcctgc cagcaaatgg tgctgtggcc gtacttagtg
     3061 actgcaaagc ccatgtgatg ctggggagaa tgcattctgg aaagtgaatg tctttggctg
     3121 agtggtggca ggtggagctg aaaaccaccc aaccaatgtt ctgatgacat ttcacttgca
     3181 agaagccagg gatgctgggg atggttctct ggggataggg acaggctttc tcaggatttg
     3241 ctttaaatta tgagagatgg gtgtcttgca gagaaacagc acaatgcaga atgacccaac
     3301 tggggcccag aaagagccca gcatgagtta cagactgctc tttgtgttcc agtgaatcca
     3361 gtgcaatagg ccataccagg gcatgggcag ctcatcacac gtatgtgttg gctgtaaatg
     3421 caggacctgc aggagataac cttccacttc ctgcagagtt tcagggttca tccaggaggg
     3481 agatggagtt gctgttcagc tggtgttctt gcatcctgct caccagtgca cgagtgctag
     3541 agacatccca gaggctgaat gctcaatagt tgcttgagat agagcaggaa ccatgctcac
     3601 actcagagga gggagggaag tactgggtaa agtgctagca ttgccttgcc tcacctcagg
     3661 gtgtggcttt ggtagagaag gacccagcag caataacact agtgatgctt gcaggcaatg
     3721 atagattctg agatcccctt tccactgcaa agagaggttc cccccccgac tctttcttct
     3781 ctctgtgagg ccttaggtac agaaatctgc aatagttggg agcttttaga agtattttga
     3841 cctcaggaac aataagtgag gctggaagtg ccttgcttgg tttcacagcc ctcaggttgt
     3901 ttctcattag ctggtggttg cactaacgat agctggcaga agagcacgct gcctgttgca
     3961 ggctaggagt atgccaacac caaggatgtg ctccctggga tgcatctgga agggacctcc
     4021 atcctgcagg gctcggccac ggtgagctca gctccatctg aatccatggg tcctccagca
     4081 gatggggctt gggcagcttt ggcactcatt ggagtgagac tgggctccgt cccaagggct
     4141 gcgggcacag cagctgtgtt ccccttggtg gtgacattgg aggaagcact tcagcatttt
     4201 aagtccagca ggctccaagg accgggagca gattttcaac gagttttccc attgactttt
     4261 cacatttccc agacaggttt gtgtgcgtcg tctcaaatgg ggctgaaatt tgacagctgt
     4321 tttttttttt ttctctttag ttgttgttcg atccattaaa atagcacctt atcctgtcaa
     4381 aacagtgcta tttgtgatcc ctgtatccgt ggctaaatat atccctgccg ctgtcggggg
     4441 cgcaaagctc tttggtctca gctggcccca tagaactgca ggagaagagt ttccatgctg
     4501 gggaggaaaa acaagcacac cctctgggga ctcgtaatcc tggctcattt tctgacctct
     4561 gatgctttct ggaaatgaaa agaaggaagt ggaaggttcc ttcaggccgt ccttgtacat
     4621 atgtgcagcc ttaccaaacc tgtgtcacgt ctgtgctgat ctgtaaaata gcattcaaag
     4681 gactttttat gtcactgcga ggtattaaag gaggatttat ttcgagtaaa aaaaaaaaaa
     4741 aagaaaaaaa aaaaaaaaa
//

LOCUS       NM_001277797            2943 bp    mRNA    linear   VRT 16-JAN-2017
DEFINITION  Gallus gallus family with sequence similarity 179 member A
            (FAM179A), mRNA.
ACCESSION   NM_001277797 XR_140068
VERSION     NM_001277797.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            AADN04000127.1.
            On Apr 20, 2013 this sequence version replaced gi:363731307.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201368,
                              SAMEA2201377 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                AADN04000127.1     3133910-3133937
            29-163              AADN04000127.1     3134765-3134899
            164-358             AADN04000127.1     3135468-3135662
            359-582             AADN04000127.1     3135946-3136169
            583-755             AADN04000127.1     3137685-3137857
            756-802             AADN04000127.1     3139096-3139142
            803-993             AADN04000127.1     3140932-3141122
            994-1153            AADN04000127.1     3141956-3142115
            1154-1318           AADN04000127.1     3143062-3143226
            1319-1460           AADN04000127.1     3145135-3145276
            1461-1566           AADN04000127.1     3146497-3146602
            1567-1802           AADN04000127.1     3148273-3148508
            1803-1961           AADN04000127.1     3149677-3149835
            1962-2079           AADN04000127.1     3150800-3150917
            2080-2183           AADN04000127.1     3151823-3151926
            2184-2382           AADN04000127.1     3153262-3153460
            2383-2599           AADN04000127.1     3154431-3154647
            2600-2686           AADN04000127.1     3159686-3159772
            2687-2943           AADN04000127.1     3162103-3162359
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Red Jungle Fowl"
     gene            1..2943
                     /gene="FAM179A"
                     /note="family with sequence similarity 179 member A"
                     /db_xref="CGNC:51462"
                     /db_xref="GeneID:421296"
     CDS             1..2943
                     /gene="FAM179A"
                     /codon_start=1
                     /product="crescerin-2"
                     /protein_id="NP_001264726.1"
                     /db_xref="CGNC:51462"
                     /db_xref="GeneID:421296"
                     /translation="MATEDNFAAAKYDAPVAVYCGSVPKVKPRCRALRGGSIDSNLQL
                     CGSRWITEEGGAISSLEGWGSKACVQDLDAGARGDLSPLPHPQEREVSSAALETAQIK
                     DKLKKRRMSEGLLAPLRGLTESSDLKGVALKPAISRSASQRLLVTSKPVPPIQNSLPP
                     PEPSWMSNGEQELREDGTTDHGGSEGNHKELTSEASLQPLYCGDEERKKSLGVALIPP
                     IPKSARPSDGDPGSTEIPLPSSQQLISQEPLEMRPRSGSRTEEKTPASLELRTLEPIL
                     PIPQHRVACSMKSVRHVYEPVPPLADLPLSQAKETDHLSSPCLLKDDDWKDSNGRIHI
                     TISKSAQEKMRQKQTREMELLLREREKERAKEKSLQFSTWSADPGGVAGEDFGSPHIN
                     GALSISSSTSNACRSSIGATLRKRVNRPSLPSIPVISQDTSFPRHSSANSLPAIALGC
                     PEWGEEPECGDAGETRPFSHPEQGLLDALAWLNSSDWQLKGKGLFSIRRLAICHSEIL
                     LSRLHDVTLAVTKEVNNLRSKVSRFAINTLGELFRIMKKHMDQEVEEVARALLQKTGD
                     SSEFIQKAADRSLGIMVGSVTPARAMAALLAGGVNHRNVLVRRYTAEHLLTVMEQIGA
                     EKLLSGTRDSVELLVHMLVKLAQDCNQDTRFYGRKMLNILMSHPKFDGHLKQFLPSRD
                     LQVVMATIKQKGVEDHMPEPPSAKGRRESRNSGLMMSQENLPSHEGSSSDVLLLPHQT
                     VRRTSLRTVEEIEQLKELNNLLSAKEFQTRIEGVMLLLDHCKSNPQLISANIVQIFDV
                     FVLRLQDSNKKVKQQSLEALASVIPILRDTLHPVLVSLVAAVTDNLNSKHTGIYAAAV
                     KVLEASIAHLDNALLLQALAHRVRFLSGRAMQDVTEHLSVLVASVYPRKAHVVERYAL
                     PVLWFFLSNMIGNGVLPGRSSNVRAAVTKLAKSLHQEMGSSLKELAASQPPHVAKHLW
                     HVLDLDGQ"
ORIGIN      
        1 atggcaacag aagataattt tgcagcagct aagtatgatg ctccagttgc tgtctactgt
       61 gggagcgtcc caaaagtcaa acccagatgc agagctctgc ggggtggaag cattgattca
      121 aacttgcagc tttgtggcag cagatggatt actgaagaag gaggggccat ctcttccctg
      181 gagggctggg gcagcaaggc ttgtgtgcag gacctcgatg ctggggctag aggtgatctc
      241 tccccccttc ctcaccccca ggaaagggag gtgagcagtg ctgccctgga aactgctcag
      301 atcaaggaca agctgaagaa gaggaggatg tctgagggcc tgttagcccc actgagaggc
      361 ctgactgaaa gcagtgacct gaagggggtt gccctgaagc ctgcaatttc taggtcagcc
      421 tcccagaggc tcctggtaac ctccaagcct gtgcccccca tccagaacag ccttcctccc
      481 ccagagccca gctggatgag caacggggag caggagctca gggaggacgg aacaacagat
      541 catggtggca gtgaaggcaa ccacaaagaa ctgacatcag aggcttcatt gcagcctctg
      601 tactgtggtg acgaggaaag gaagaagtca ctgggggtgg ctttgattcc tcccatcccc
      661 aagtcagcaa gaccatctga cggggatcct ggcagcactg aaattcctct tccaagctca
      721 cagcagctga tttctcaaga gcccctggag atgaggccaa gatcaggcag caggacagaa
      781 gagaagaccc ctgcgtctct ggaactccgg actctggaac ccatcttgcc tattccccag
      841 catcgtgttg cctgtagcat gaagtctgtg aggcatgtgt atgaacccgt gcccccattg
      901 gcagatctgc ccctcagcca ggccaaagag acggatcacc tttcaagtcc ttgccttctg
      961 aaggacgatg actggaagga cagcaatgga aggatccata tcaccatatc caagtctgct
     1021 caggagaaaa tgcgccagaa gcaaacaaga gagatggagc ttttgctcag agagagggag
     1081 aaagagagag caaaggagaa gtcattgcag ttctccactt ggagcgctga ccctgggggt
     1141 gtggctggag aagactttgg ctcaccgcac atcaatgggg cactctccat ctcctccagc
     1201 accagcaatg cgtgcaggtc aagcattggt gccacgctga ggaagcgggt caacaggccc
     1261 tccttgccca gcatccctgt catcagccag gacaccagct tcccacggca ctcttcagca
     1321 aactcactgc cagccattgc tttgggctgc ccggaatggg gagaggagcc tgagtgtggg
     1381 gatgccgggg aaaccagacc cttctctcat ccagagcagg ggctgctgga tgcacttgcg
     1441 tggctcaaca gcagtgactg gcagctgaag gggaaaggac tcttcagcat cagacgcttg
     1501 gccatctgcc attcggaaat cctcctcagt agacttcatg atgttacctt ggcagttacc
     1561 aaagaggtga acaacctccg ctcgaaggtg tctcgctttg caatcaacac tcttggagag
     1621 ctcttcagga tcatgaagaa acacatggac caggaggtag aggaggtcgc tcgggccttg
     1681 ctgcagaaga cgggggactc cagcgagttc attcaaaaag cagctgatcg atccctgggg
     1741 attatggtgg ggagtgtgac tcctgcaaga gcaatggctg ctctcctggc tggtggggtc
     1801 aatcaccgca atgtcctggt gcggaggtac acagcagagc acctactgac tgtgatggag
     1861 cagattggag ctgaaaagct cctgtcaggc acgcgtgaca gcgtcgagct tctcgttcac
     1921 atgctggtca agcttgctca ggactgcaat caggatacaa ggttttatgg aaggaagatg
     1981 ctgaatatat tgatgagtca tccaaaattt gatggacatt tgaaacaatt tctcccctcg
     2041 cgtgacttgc aagttgttat ggcaacaatt aagcagaaag gggtagaaga ccatatgcct
     2101 gaacctccat ctgccaaagg ccgcagggag tccaggaaca gtggtttgat gatgtcccag
     2161 gaaaacttgc cttctcatga agggtccagc tctgatgtcc tcctcttacc ccatcagaca
     2221 gttcggcgca catcgcttcg cactgtggaa gagattgaac aactcaaaga gcttaacaat
     2281 ctcctgtcag caaaggagtt tcagacacga atagagggag tcatgctcct cctagatcac
     2341 tgcaaaagca acccccagct catctcagcg aatattgtcc agatttttga tgtttttgtc
     2401 ctgagacttc aggattccaa taagaaagtg aagcagcagt cactggaagc tctggcttca
     2461 gttataccca ttctcagaga caccttacac ccagtgctgg tctctttggt agcagcagtc
     2521 acagacaacc tgaactcaaa gcatacaggg atttatgctg cggctgtgaa ggtgttggaa
     2581 gcatccattg ctcacctaga caacgcatta ctgctgcaag cgttggccca ccgcgtgcgt
     2641 ttcctcagcg gccgagccat gcaggacgtc acggagcacc tctcagtgct tgtggcatct
     2701 gtttatcccc ggaaagccca cgtggtcgaa cgctacgccc tgcccgtgct ctggttcttc
     2761 ctgagcaaca tgatcggaaa tggtgtcctg cccgggcgaa gcagcaatgt cagggctgca
     2821 gtcaccaagc ttgccaagag cctccaccaa gagatgggct ccagcctcaa ggagctcgct
     2881 gccagccagc ctccgcacgt ggcaaaacac ctctggcacg ttttggacct ggatggtcag
     2941 tga
//

LOCUS       NM_001184757             468 bp    mRNA    linear   VRT 13-JAN-2017
DEFINITION  Gallus gallus phospholipase A2 group X (PLA2G10), mRNA.
ACCESSION   NM_001184757 XM_414738
VERSION     NM_001184757.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GU474518.1.
            On May 18, 2010 this sequence version replaced gi:118097684.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU474518.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201359
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /map="14"
     gene            1..468
                     /gene="PLA2G10"
                     /note="phospholipase A2 group X"
                     /db_xref="CGNC:50254"
                     /db_xref="GeneID:416425"
     CDS             1..468
                     /gene="PLA2G10"
                     /EC_number="3.1.1.4"
                     /note="group 10 secretory phospholipase A2"
                     /codon_start=1
                     /product="group 10 secretory phospholipase A2 precursor"
                     /protein_id="NP_001171686.1"
                     /db_xref="CGNC:50254"
                     /db_xref="GeneID:416425"
                     /translation="MKNPCQLPLVLLLLAAVYRGTLGEAHVRNRRGILELAGAIRCTT
                     GRSPFAYLRYGCYCGLGGRGWPKDRVDWCCFNHDCCYGKAEQAGCHPKIESYHWECED
                     NTAVCESLEDKCQKMACECDREAAKCFSKAPYHTKYLLWPDMMCGEVQPLCRY"
     sig_peptide     1..69
                     /gene="PLA2G10"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 atgaaaaatc cttgtcagct gccgctcgtg ctgctgctgc tcgccgccgt ttatagaggc
       61 accttggggg aagctcatgt taggaaccga agaggaattc ttgaattagc tggagccatt
      121 agatgcacta cagggcggtc tccttttgcc tacctacgtt acggatgcta ctgcggcctg
      181 ggaggaaggg gatggcccaa ggacagagtg gactggtgct gctttaacca cgactgttgc
      241 tatggtaagg cagagcaagc aggctgtcac cccaagatag aaagttacca ctgggaatgc
      301 gaggacaaca ctgctgtatg tgaatcacta gaagacaaat gtcaaaaaat ggcatgtgaa
      361 tgtgatcgtg aagctgccaa atgtttttct aaagctccct accataccaa gtacctcctg
      421 tggccagata tgatgtgtgg tgaggttcaa cctttgtgta gatattaa
//

LOCUS       NM_205038               2046 bp    mRNA    linear   VRT 13-JAN-2017
DEFINITION  Gallus gallus peripherin 2 (PRPH2), mRNA.
ACCESSION   NM_205038
VERSION     NM_205038.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2046)
  AUTHORS   Weng J, Belecky-Adams T, Adler R and Travis GH.
  TITLE     Identification of two rds/peripherin homologs in the chick retina
  JOURNAL   Invest. Ophthalmol. Vis. Sci. 39 (2), 440-443 (1998)
   PUBMED   9478005
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF031238.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF031238.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201381, SAMEA2812695
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..2046
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /note="peripherin 2"
                     /db_xref="CGNC:49540"
                     /db_xref="GeneID:395899"
     misc_feature    182..184
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /note="upstream in-frame stop codon"
     CDS             272..1336
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /note="retinal degeneration, slow; retinal degeneration
                     slow protein; photoreceptor outer segment membrane
                     glycoprotein 1; peripherin 2 (retinal degeneration, slow)"
                     /codon_start=1
                     /product="peripherin-2"
                     /protein_id="NP_990369.1"
                     /db_xref="CGNC:49540"
                     /db_xref="GeneID:395899"
                     /translation="MALLKVKFNQKKRVKLAQGLWLMNWFSVFAGIIVFSMGLFLKIE
                     LRKRSEVMDNSESHFVPNSLILMGILSCAFNGFAGKICYDSLDPAKFAKWKPLLKPYL
                     ALCFFFNILLFFVALICFLMRGSLESTLAQGLKNSMKFYRDTDTPGRCFMKKTIDMLQ
                     IEFKCCGNNGFKDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSS
                     PRPCIQYQVTNNSAHYSYDYQTEELNLWGRGCREALLHYYSSMMSSMGAVVLLVWLFE
                     MSVMVGLRLLHTSLESIANPEDPECESEGWILENSLKDTLKSALESLKKIGKFNQVEA
                     GAEGAEGEEAGKTPAITTVS"
     misc_feature    344..400
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
                     transmembrane region"
     misc_feature    455..511
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
                     transmembrane region"
     misc_feature    569..640
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
                     transmembrane region"
     misc_feature    1064..1141
                     /gene="PRPH2"
                     /gene_synonym="CRDS1; peripherin-2; RDS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
                     transmembrane region"
ORIGIN      
        1 tcctttgctt ggaaggaacc accagaaata gttgtaggtg ctaattgccc actattctta
       61 ctaatgtgaa tttgtgaatt tggacctttg aatatctact tgcttgaacc gaagcgtggg
      121 gagctcaaga tggagggacc gtgcagcact tcgcttcggg ctgcatcagc cggagctttt
      181 ctaaacgcct gaatggttct ttctcgaatc gcttacacgg agaagagggg ttcaggctgc
      241 aaaagctttc agcgtctcac gtattgcgac gatggcactg ctgaaagtca aattcaacca
      301 gaagaaacgg gtaaaactag cccaggggct atggctcatg aactggtttt cagtctttgc
      361 tggaatcatc gtttttagca tggggttgtt cctcaagatt gagctccgga agcgaagcga
      421 agtgatggac aattctgaaa gccattttgt gcccaattct ttgatattga tgggtatatt
      481 atcctgcgcc ttcaatggtt ttgctggcaa aatttgttac gattctctgg atcccgctaa
      541 atttgccaag tggaagcctt tgctgaaacc ttacctggca ctatgtttct tcttcaacat
      601 actcctcttc tttgtcgctc tgatttgctt tctcatgcgg ggctccctgg agagcacgct
      661 ggctcagggg ctgaagaaca gcatgaagtt ctaccgggac acagacaccc ctggaaggtg
      721 cttcatgaag aagacaatcg acatgctcca aatcgagttc aagtgctgtg ggaacaatgg
      781 cttcaaagac tggtttgaaa ttcagtggat cagcaacaga tacctggact tcagctccaa
      841 agaagtgaaa gatcgaatca aaagcaacgt tgatggacgg tacctggttg atggtgtccc
      901 cttcagctgc tgcaacccca gctccccgag gccctgcatc cagtaccagg tcaccaacaa
      961 ctcggctcac tacagctacg actaccagac ggaggagctc aacctctggg gccgtggctg
     1021 ccgggaagcc ctcctgcact actacagcag catgatgagc tccatgggtg ccgttgtcct
     1081 ccttgtctgg ctttttgaga tgtctgtgat ggttggcttg cgtcttttgc acacctctct
     1141 ggaaagcatc gcaaatcctg aagaccctga gtgtgaaagt gaagggtgga ttctagagaa
     1201 cagcctgaaa gacactctga agtctgcgct ggagagcttg aaaaagattg gtaagttcaa
     1261 tcaggtggaa gcaggtgccg aaggggctga aggagaagaa gctgggaaga ctccagccat
     1321 cacaacagtc agttgagctt ctaaatgatg cgaactctga tcagaggaat gaaaaaactg
     1381 aggattgtga atacctactt tttaaaagct acgtatcaac catcagaata cacgtttcta
     1441 cacacgctat cttttttatt attattatac atgcatacgg aaggatacag catagcgcac
     1501 cttgggataa tgcatttatc ctctcagtga gtacaccaga ttcataactt ctgggggaaa
     1561 atgaccccac taggactttc aatacttacg tgttccctta ccagggactg ctagcattaa
     1621 aaagaaatca tcataattgt tggcatcaca ctgatccgtt ccatcttatc ttgaaattaa
     1681 aagtggaatt tgaaatgtta gtattttttc tcaagttggc ttgccatcat acttgatgta
     1741 cgttaaccta caaagacaaa tgtcttggtt ttctggagag taacgtgtta aaagtcaaag
     1801 gaagaataat ttccagaagt gtatataata acctagtgtt tcgacaaacc tctcatataa
     1861 tgtgtttttt ttttttttgt tgatgtgcta agcagtggta tttcctgctg tattcttaag
     1921 atgtacttaa tagaacaaaa caaaaagtta ttctgagaac ttcagtacta aacaaaaatt
     1981 gtaacttaag aacagagcaa gcatgaaaac aacaccaagg taagatttat gggttttgtt
     2041 cttggg
//

LOCUS       NM_204727               1598 bp    mRNA    linear   VRT 13-JAN-2017
DEFINITION  Gallus gallus protein phosphatase 1 regulatory subunit 12B
            (PPP1R12B), mRNA.
ACCESSION   NM_204727
VERSION     NM_204727.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Zhang Y, Mabuchi K and Tao T.
  TITLE     Expression in insect cells and characterization of the 110 kDa
            anchoring subunit of myosin light chain phosphatase
  JOURNAL   Biochim. Biophys. Acta 1343 (1), 51-58 (1997)
   PUBMED   9428658
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Chen YH, Chen MX, Alessi DR, Campbell DG, Shanahan C, Cohen P and
            Cohen PT.
  TITLE     Molecular cloning of cDNA encoding the 110 kDa and 21 kDa
            regulatory subunits of smooth muscle protein phosphatase 1M
  JOURNAL   FEBS Lett. 356 (1), 51-55 (1994)
   PUBMED   7988720
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from S74622.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: S74622.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="26"
                     /map="26"
     gene            1..1598
                     /gene="PPP1R12B"
                     /note="protein phosphatase 1 regulatory subunit 12B"
                     /db_xref="CGNC:195"
                     /db_xref="GeneID:395478"
     misc_feature    391..393
                     /gene="PPP1R12B"
                     /note="upstream in-frame stop codon"
     CDS             406..966
                     /gene="PPP1R12B"
                     /EC_number="3.1.3.53"
                     /note="21 kDa; protein phosphatase 1M regulatory subunit;
                     PP1M M21 subunit; protein phosphatase 1, regulatory
                     (inhibitor) subunit 12B"
                     /codon_start=1
                     /product="protein phosphatase 1 regulatory subunit 12B"
                     /protein_id="NP_990058.1"
                     /db_xref="CGNC:195"
                     /db_xref="GeneID:395478"
                     /translation="MSSLFTRSKEYTRSRKSQSDSPPSSPSPIAKTLRHERLSRLEAA
                     TTPATSDSYSDRASSRSSAYSRRENRLAALSSRAEEESNRDYKKLYESALSENQKLKS
                     KLQEAQLELADIKSKLEKAAQQKHEKTSDRSSMLEMEKREKRALERKLSEMEEEMKIL
                     TELKSDNQRLKDENGALIRVISKLSK"
ORIGIN      
        1 gtggtttggg tttgtttttt gactctttgg agagtcatct agtctagagg cactcagctg
       61 ttcccccggc tcttcccatt gagctgggag tcctttcctc gtgcagcttt ttgggagtcc
      121 tttcctcgtg cagctttggg aaggagcccc tggtcctgcg gctccggata ggagatgtcc
      181 ctgcgtgggc actgcggaca ccacctcttc tgctcagacg aggaaccttt cagagcctca
      241 gctccctctg cagcagatta atgcctaaaa tcatacacct gaactggcag ggtttaatta
      301 ccagagctgc gaatagttta attagtttgt tctgaccttg gaaggaggac ctgcccagca
      361 acgggagggc gcagctgtat tgctctgcgg tgacccagca gggccatgtc gtcgctgttc
      421 accaggagca aggagtacac gcggagcagg aagtcccagt cagattcacc cccgtcctct
      481 ccttccccga ttgcaaagac gctcagacat gaacgacttt ccaggttgga agcagctaca
      541 acccctgcca ccagtgactc ctacagtgac cgtgcctcca gccgctccag tgcctacagc
      601 cgcagagaga accgcctagc agccctcagc agcagggcag aagaggagag caacagggac
      661 tataaaaagt tgtacgaaag cgccctgtct gaaaatcaga agctgaagtc aaaactgcaa
      721 gaagcacagc tcgagctggc agacatcaaa tccaagttgg aaaaggcagc ccagcagaaa
      781 cacgagaaaa cttctgaccg gtctagcatg ctggagatgg agaaaaggga gaagcgagct
      841 ctggagcgga aactctctga aatggaggag gagatgaaga tactgacgga gctgaaatcg
      901 gacaatcaaa ggctgaagga cgaaaacggg gctctcattc gtgtcatcag caaactctcc
      961 aagtagggag ccgagctgca ggatgagggg cgcaccgctg agccctgccc cttcctcctg
     1021 ccccacgcac agcaccgctg cagccggggg tcagcagcgc tcctccctgc ctggctggac
     1081 gttccctttc tgccctttcc cccccgcatc gcacaccccg gccgttctgg tttcatttca
     1141 gcatgttgtg gtatctcgga catttggctc gggggagatg aggaggatgc agagcggtgc
     1201 cgagctgcca aaacttctcc ttccagcagc ccgcggtgtg cagcagggag ctgttctgtg
     1261 caaagcgacg cccacggagc tggtgcagca aatccgtgcc ctctgcaggt gggagatgtg
     1321 actgtgggct ggaactccgt ggacgtgcat cagcccatgt gcactgtgcg acttcggtac
     1381 gatgcgatgc tacgaggaat ggcagcagag ctgattcctt cagcaggcgg ggacggctgc
     1441 tctgcacaga gacctgcctg ctttttattt aatgtaacat agcagatctg gtgggtaagt
     1501 gcccctcgtg tgcggctggt ggtggggtgc cgtgctacaa acccccgggg ctccctccaa
     1561 gctcactgca ctcagcagca cctccccgaa ttcctaca
//

LOCUS       NM_001031150            2596 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus rap1 GTPase-GDP dissociation stimulator 1 (RAP1GDS1),
            mRNA.
ACCESSION   NM_001031150 XM_420653
VERSION     NM_001031150.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2596)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ719848.1.
            On Jan 11, 2017 this sequence version replaced gi:71896682.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ719848.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201361, SAMEA2201363
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2596              AJ719848.1         3-2598
FEATURES             Location/Qualifiers
     source          1..2596
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
                     /breed="Leghorn"
     gene            1..2596
                     /gene="RAP1GDS1"
                     /note="rap1 GTPase-GDP dissociation stimulator 1"
                     /db_xref="CGNC:9282"
                     /db_xref="GeneID:422701"
     misc_feature    79..81
                     /gene="RAP1GDS1"
                     /note="upstream in-frame stop codon"
     CDS             220..2043
                     /gene="RAP1GDS1"
                     /note="RAP1, GTP-GDP dissociation stimulator 1"
                     /codon_start=1
                     /product="rap1 GTPase-GDP dissociation stimulator 1"
                     /protein_id="NP_001026321.1"
                     /db_xref="CGNC:9282"
                     /db_xref="GeneID:422701"
                     /translation="MDNLSDALKKLKITATDSTADSLEGCLDCLLQALAQNNMETSEK
                     IQKSGVLQVFASLLMPQSSCTAKVANIIAEVARNEFMRNPCVDAGLIPPLVQMLNCKD
                     QEVLLQTGRALGNICYDSHEGRSAVDHAGGAHIVVDLIRSLCSKTDPASEKLLTVFCG
                     MLMNYSNENDTLQSQLINMGVIPTLVKLLGIHCQNAALTEMCLVAFGNLAELESSKEQ
                     FAYTNIAEELVKLFKKQVEHDKKEMIFEVLAPLAENDVIKLQLVEAGLVECLLEIVQK
                     TVDSDKEDDVAELKTASDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNSHQLQL
                     AGALAIANFARNDGNCTHMVDNGIVQKLMDLLDRHVEDGNVTVQHAALSALRNLAIPV
                     VNKAKMLSAGVAEAVLKFLRSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNAKLVERL
                     VEWCEAKDHAGVMGESNRLLSALIRHSKSKDVIRTIVQSGGIKHLVTMATSEHVIMQN
                     EALVALALIAALELVTAEKDLENAQLVQILHRLLSDDRSAPEIKYNSIVLVCALIGSE
                     SLQKEVQNMAFLEVVSKLRSHENKTVAQQASLTEQRLAVES"
ORIGIN      
        1 gcggcggcac ggcagggtgc cgccgggcgg gcggggtgtc tcccaggcgg ccttgcccgg
       61 atgtgctacc ctgactcata gccgcgccgc acgcagcctc cgcgccgctg ccgcgctcgc
      121 cccgctccgc tccgttccgc gcacagctct cccgcgcctc cccgagaggc ggcggtggct
      181 ccgggaggag gggaaggagg aggaggccgc ggcgccacca tggataatct aagtgatgcc
      241 ctgaaaaagc tgaagataac agccactgac agcacagcag atagcttgga gggatgcttg
      301 gactgcctgc ttcaagctct ggcacaaaac aatatggaga caagtgaaaa aatccagaaa
      361 agtggagttc ttcaggtgtt tgcgagtctg ttgatgccac agtcttcctg cacagcaaaa
      421 gtagctaaca tcatagcaga agtagccaga aatgaattta tgcggaaccc atgtgtggat
      481 gctgggttga tccctccttt ggtgcagatg ttaaactgca aagatcagga agtattgctg
      541 caaacaggac gtgccctggg caatatatgc tacgatagcc atgagggcag gagcgcagtt
      601 gaccatgcag gtggtgcaca tattgtagta gaccttataa ggtcgctgtg cagtaaaaca
      661 gatccagcca gtgagaagct cttgactgtc ttttgtggca tgctgatgaa ctatagcaat
      721 gagaatgata ccctgcaatc acagcttatc aatatgggtg ttattcctac actagtgaaa
      781 ttgttgggta ttcattgcca aaatgcagct ctgacagaga tgtgccttgt tgcttttggc
      841 aatttagcag aacttgagtc aagcaaagaa cagtttgcct acacaaacat tgctgaagag
      901 cttgtgaaac tgttcaagaa gcaagtagag catgataaaa aagagatgat ctttgaagtt
      961 ttggctcccc tagcagaaaa cgatgtcatt aagctgcagc tggttgaagc aggcttggtg
     1021 gagtgcttac ttgagattgt ccagaagact gttgacagtg acaaagagga tgacgttgca
     1081 gagcttaaaa cagcttctga tcttatggtt ttgttactgc tcggagatga atccatgcag
     1141 aagttatttg aaggaggaaa aggcagtgtg ttccaaagag tactttcatg gattccttcc
     1201 aacagccatc agctacaact tgcaggagca ttggctattg caaattttgc cagaaacgac
     1261 ggaaactgca cccatatggt ggataacggc atagttcaaa agctgatgga tctgctagac
     1321 agacatgtgg aggatgggaa tgtaactgtg cagcacgcag ctctgagcgc gctcagaaac
     1381 ctggctattc ctgttgtaaa taaggctaag atgctatcag ctggtgttgc agaagcagta
     1441 ttgaaatttc tcagatcgga gatgccccct gttcagttca agctgctggg aacattacga
     1501 atgttaatag atgcacaagc agaagcagct gaacaactgg gaaaaaatgc aaaactggtg
     1561 gaacgattgg tggagtggtg tgaagccaag gatcacgcag gtgtgatggg agaatcaaac
     1621 agactacttt ctgcacttat acgacacagc aaatctaaag atgtaattag gacgattgta
     1681 cagagcggtg gcatcaagca tttagtaacc atggcaacca gcgaacacgt aataatgcaa
     1741 aacgaagctc tcgttgcact ggcattaata gcagctttag agttagtcac tgctgaaaag
     1801 gatcttgaaa atgctcagct tgttcagatt ctacacagac tgctatcaga cgacaggagc
     1861 gctccagaaa taaaatacaa ctccatagtg ctggtctgtg cccttattgg atctgaatct
     1921 ctccaaaagg aagtgcagaa catggcgttc ctagaagtcg tatcaaaact ccgcagccat
     1981 gagaacaaaa ctgttgccca gcaggcctcg ctaacagagc agagacttgc tgtagaaagc
     2041 tgaggaaggt cttgttttca ttgcatccat cacagattcc accttcatcc tttgtcctgc
     2101 tgtcgctcct gctatgtttt ccactgtatc acttgtgcat gcgtgtaatg tccccacaca
     2161 aattgataaa ctgctgtagg tacccatcca aaaaggtttc taaaaattca taggtggtgt
     2221 taacatgaat ttgtctccgc ccgtaactgt tctacttgta ttcttgttgc ttgggccaca
     2281 tagtagaatg tgcatgttgt agtcctatga tgatgtaaaa gtggtactac acaatgactc
     2341 tttcctcaca cccccctaac tgcataacaa tgtactacta aattagggac agtacaagat
     2401 gcagcaagtc caggctagtg cactgactgt aggattaaga agtaaatcta gctccatttt
     2461 tggtgctctg aagaggcagg tttgaatgca ttgtactgct gctcattcac tggtcttgcc
     2521 tattaatgtc aaactcgtgg tacctagagg taaacaaata aaaatttcag tgctttcact
     2581 taaaaaaaaa aaaaaa
//

LOCUS       NM_204996               3595 bp    mRNA    linear   VRT 06-JAN-2017
DEFINITION  Gallus gallus Janus kinase 3 (JAK3), mRNA.
ACCESSION   NM_204996 XM_424229
VERSION     NM_204996.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3595)
  AUTHORS   Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
            Korn B and Buerstedde JM.
  TITLE     A large database of chicken bursal ESTs as a resource for the
            analysis of vertebrate gene function
  JOURNAL   Genome Res. 10 (12), 2062-2069 (2000)
   PUBMED   11116100
REFERENCE   2  (bases 1 to 3595)
  AUTHORS   Sofer L, Kampa D and Burnside J.
  TITLE     Molecular cloning of a chicken JAK homolog from activated T cells
  JOURNAL   Gene 215 (1), 29-36 (1998)
   PUBMED   9666067
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AF034576.2 and AJ399251.1.
            On Jan 6, 2017 this sequence version replaced gi:787166343.
            
            Sequence Note: This RefSeq record was created from transcripts of
            different breeds. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF034576.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2334              AF034576.2         1-2334
            2335-2826           AJ399251.1         85-576
            2827-3595           AF034576.2         2824-3592
FEATURES             Location/Qualifiers
     source          1..3595
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="28"
                     /map="28"
     gene            1..3595
                     /gene="JAK3"
                     /gene_synonym="JAK"
                     /note="Janus kinase 3"
                     /db_xref="CGNC:20233"
                     /db_xref="GeneID:395845"
     CDS             56..3379
                     /gene="JAK3"
                     /gene_synonym="JAK"
                     /EC_number="2.7.10.1"
                     /note="Janus kinase 3 (a protein tyrosine kinase,
                     leukocyte)"
                     /codon_start=1
                     /product="tyrosine-protein kinase JAK3"
                     /protein_id="NP_990327.2"
                     /db_xref="CGNC:20233"
                     /db_xref="GeneID:395845"
                     /translation="MAPLGEETPLIGERSCSLSSSEPGTLQVYLYHRGPHAPPDSAAT
                     LTFTFGEYTAEELCVHAAKACGVLPICHPLFALATEDLSCWYPPNHLFTVEDARSQVV
                     VYRIRFFFPNWCGQGQVHRFQLPSDRPSPVLDYPVIDYLFAQSRSDFIAGRMELALSL
                     AGQEECLSLAVLDMLRIAKEKWQSPKEVFSCVSYKTCIPEQLRCQIQQHSFLTRKRIR
                     RRVAQSLRRMGGCRVDGCCLKLKYLLDLERLRCCWAEESFHAHGPDADIAIHVSTDSG
                     VSWSCVGSESRQHFCDFPDIADVSIKQASRDGGPVENRIVTLTKTDNRVLEVEFPTLR
                     EALSFMALVDGYYRLTADAHHYFCKEVAPPRLLEDMENQCHGPISSEFAVRKLKAAGS
                     HPGLYVLRRSPQDFDSYLLTVCAETRSGQDYKRCLIRRDEDGSFWLAGLARRFCSLQE
                     LLGTYGCCGLQAEGAHLRLDTCCPPLPREKSNLLIVRSGCPRPPNSPPAPRRSPNQMS
                     FHKIDPESLIRGESLGQGSFTHIYKGIKRDQKDDEFYQTPVVLKVMDSSHRNCSESFL
                     EAASIMSQLSHKHLVLLHGVSLGKDSIMVQEYIRHGPLDLYLKKNHSEGKVTTSWKLQ
                     VAKQLAYALNYLEDKKITHGNVSAKKVLLTREGDAASSSPPFIKLNDPGVSITVLAKE
                     WLVERIPWVAPECLSDPQSLALPADKWGFGATLWEIFSGGNMPVSLLEPQKKLQFYDS
                     RLQLPAPRWSELAALIAQCMRYAPSRRPCFRAIIRDINSLISSDYELLSELSPGDVTL
                     RESCWGYEHVAAGHGPAQFEERHLKYISLLGKGNFGSVELCRYDPLGDSTGELVAVKK
                     LQQDSAKELQDFEREIQILHSLQHDFIVKYRGVCYSRGRRGLRLVMEYLPDGCLRDYL
                     QKNQHRLEHRTLLLYAWQICKGMEYLGAQRCVHRDLASRNILVESETHVKIGDFGLAK
                     LLPQDKDYYVVQEPGQSPVFWYAPESLADNVFSRASDVWSFGVLLYELFTYSNKSRSP
                     SEEFLHMMGPEKPAQIICHLLELLKDSRRLPVPPGCPMEVYAMMLSCWAFAPSARPTF
                     TELAARVEALRDGRGTAHG"
ORIGIN      
        1 gggggggggg tacacgggga ccacactgag caccgctgtc cccgcagtgc ccgccatggc
       61 cccgctgggc gaggagacgc cgctgatcgg tgagcgctcc tgcagtctgt cctcctcgga
      121 gcccggcacg ctgcaggtgt acctctacca ccggggaccc catgcgcccc ccgactccgc
      181 tgccaccctc accttcacct tcggcgagta cacggccgag gagctgtgcg tgcacgctgc
      241 caaggcctgc ggagtgctgc ccatctgcca ccccctcttc gcgttggcta cggaggatct
      301 cagctgctgg taccccccca accacctctt cacggtggag gacgcccgca gccaggtggt
      361 ggtgtatagg atcaggttct tcttccccaa ctggtgtggg cagggccagg tgcaccgctt
      421 ccagctgcca agtgaccgcc ccagccccgt gctggactac cctgtcatcg attacctgtt
      481 tgcccagtct cgtagtgact tcatcgcggg gcgcatggag ctggcactga gcctggcggg
      541 gcaggaggag tgcctgagcc tggcggtgct ggatatgctg cgcatcgcca aggagaagtg
      601 gcagagcccc aaggaggtct tcagctgcgt cagctacaag acctgcatcc cggagcagct
      661 gcggtgtcag atccagcagc acagcttcct cacccgaaag cgcatccgcc gccgtgttgc
      721 gcagtccctg cgtaggatgg ggggctgccg ggtggacggg tgctgcctga agcttaaata
      781 cctgctggac ctggagaggc tgcggtgctg ctgggctgag gagagcttcc atgcacacgg
      841 ccccgacgcc gacatcgcca tccacgtgtc tacagacagc ggggtctcct ggagctgcgt
      901 tggatctgag agccgccagc acttctgtga cttccccgac atcgccgacg tcagcatcaa
      961 gcaggcgagc cgcgacggtg gccccgtgga gaaccgcatc gtcaccctca ccaagacgga
     1021 caacagggtg ctggaggtgg agttccccac gctgcgggaa gcactctcct tcatggctct
     1081 ggtggatgga tactaccgcc tgactgcaga tgcccaccac tacttctgca aggaggtggc
     1141 ccccccccgg ctgctcgagg acatggagaa ccaatgccac ggacccatca gctctgagtt
     1201 tgctgtgcgc aaactgaagg cggcggggtc ccatccgggg ctgtacgtgc tgcgccgaag
     1261 cccccaggac ttcgacagct acctgctgac cgtgtgcgcc gagacgcgct ccgggcagga
     1321 ctacaagcgc tgcctgatcc gcagggatga ggatggcagc ttctggctgg cagggctggc
     1381 acggcgcttc tgcagcctgc aggagctgct tggcacctat gggtgctgcg ggctgcaggc
     1441 tgagggtgcc cacctgcgcc tggacacgtg ttgcccaccc ctgccccgag agaagtccaa
     1501 cctgctgatt gtgcgcagtg gatgcccacg accccccaat tctccccccg ccccgcgccg
     1561 cagccccaac cagatgtcat tccacaagat cgaccccgag agcctcatac ggggcgagag
     1621 cctggggcag ggctccttca cccacatcta caaaggcatc aagcgggacc agaaggatga
     1681 cgagttctac cagaccccgg tggtgctcaa ggtgatggac agcagccacc gcaactgctc
     1741 cgagtccttc ctggaggccg ccagcatcat gagccagctg tcccacaagc acctggtgct
     1801 gctgcacggc gtcagcctcg gcaaggacag catcatggtg caggagtaca tcaggcacgg
     1861 gcccctggac ctctacctaa agaagaacca cagcgagggc aaggtgacga ccagctggaa
     1921 gctgcaggtg gccaagcagc tggcatatgc actcaactac ttggaggata agaaaatcac
     1981 ccacggcaac gtctctgcta agaaggtgct gctgacccgg gagggggacg cggccagcag
     2041 cagccccccc ttcatcaagc tcaacgaccc cggggtcagc atcaccgtcc tggccaagga
     2101 gtggctggtg gagcgcatcc cttgggtggc ccccgagtgc ctgagcgacc cccagagcct
     2161 ggcgctgcca gctgacaagt ggggctttgg ggcaacctta tgggagatct tcagtggggg
     2221 caacatgcct gtcagcctac tggagccaca gaagaagctg cagttctacg acagccgcct
     2281 gcagctgccc gccccgcgct ggagcgagct ggccgcgctc atcgctcagt gcatgcgcta
     2341 cgcgcccagc aggcggccct gcttccgtgc catcatccgc gacatcaaca gcctcatctc
     2401 ctccgactac gagctgctct cagagctgtc acccggcgat gtgacgctgc gggagagctg
     2461 ctgggggtac gagcacgtgg cggcggggca cggcccggct cagttcgagg agaggcacct
     2521 caagtacatc tcactgctgg gcaagggcaa ctttgggagc gtggagctgt gccgctacga
     2581 cccgctgggt gacagcacgg gtgagctggt ggccgtgaag aagctgcagc aggattcggc
     2641 caaggagctg caggactttg agagggagat ccagatcctg cactcgctgc agcacgactt
     2701 catcgtcaag taccggggcg tctgctacag ccgtgggcgc cgggggctgc ggttggtgat
     2761 ggagtatctg cctgacggct gcctgaggga ctacctgcaa aagaaccagc accgcctgga
     2821 gcaccgcacg ctgctgctct acgcctggca gatctgcaag ggcatggagt acctgggggc
     2881 gcagcgctgc gtgcaccgcg acttggccag caggaacatc ctggtggaga gcgagaccca
     2941 cgtcaagatc ggtgacttcg ggctggccaa gctgctgcca caggacaagg actactacgt
     3001 ggtgcaggag cccgggcaga gccccgtgtt ctggtacgca cccgagtcgc tggctgacaa
     3061 cgtcttctcc cgagcatccg acgtgtggag cttcggggtg ctgctctatg agctcttcac
     3121 ctacagcaat aagagcagga gcccctcgga ggagttcctc cacatgatgg gccctgagaa
     3181 accagcacag atcatctgcc atttgctgga gctgctgaag gactcccggc ggctcccggt
     3241 gcccccgggc tgccccatgg aggtgtatgc gatgatgctg agctgctggg cgttcgcccc
     3301 cagtgccaga cccaccttca ccgagttggc agccagggtt gaggcactgc gggatggccg
     3361 tggcaccgcc catgggtagg gggtgcgtgg aggggggagt acaacccccc tgcagccccc
     3421 agcacgaggg catgacagac ccccagcacg agggcatgac agacagaccg acggacgcag
     3481 caatgctcca atgcgtttta accactgtgg ttgtttctgt tgtgactccc cccccccatt
     3541 tacccctctt ttgtaaccgg gtttgaccaa tttcaagtaa atgatggtgg aattt
//

LOCUS       NM_001005808            2905 bp    mRNA    linear   VRT 06-JAN-2017
DEFINITION  Gallus gallus isocitrate dehydrogenase 3 (NAD(+)) alpha (IDH3A),
            mRNA.
ACCESSION   NM_001005808 XM_413748
VERSION     NM_001005808.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2905)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ738046.1, AJ720955.1 and CR406443.1.
            On Jan 6, 2017 this sequence version replaced gi:347360901.
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               AJ738046.1         390-497             c
            109-217             AJ720955.1         2-110
            218-2107            CR406443.1         1-1890
            2108-2855           AJ720955.1         2001-2748
            2856-2905           AJ720955.1         2749-2798
FEATURES             Location/Qualifiers
     source          1..2905
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="10"
                     /map="10"
     gene            1..2905
                     /gene="IDH3A"
                     /note="isocitrate dehydrogenase 3 (NAD(+)) alpha"
                     /db_xref="CGNC:2399"
                     /db_xref="GeneID:415362"
     misc_feature    174..176
                     /gene="IDH3A"
                     /note="upstream in-frame stop codon"
     CDS             216..1316
                     /gene="IDH3A"
                     /EC_number="1.1.1.41"
                     /note="isocitrate dehydrogenase 3 (NAD+) alpha"
                     /codon_start=1
                     /product="isocitrate dehydrogenase [NAD] subunit alpha,
                     mitochondrial"
                     /protein_id="NP_001005808.2"
                     /db_xref="CGNC:2399"
                     /db_xref="GeneID:415362"
                     /translation="MAAAAWMPAVSRLLGAFKNQKQVTRSFSSAVQTVTLIPGDGIGP
                     EISAAVMKIFDAAKVPIQWEERNVTAIQGPGGKWMIPPDAKESMDKNKMGLKGPLKTP
                     IAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVI
                     VEGVVQSIKLITEEASKRIAEFAFEYARNNQRSHVTAVHKANIMRMSDGLFLRKCREA
                     AENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSG
                     NIGANGVAIFESVHGTAPDIAGKDLANPTALLLSAVMMLRHMGLHKHATKIETACFDT
                     IKDGKALTKDLGGNAKCSEFTEEICSRVRDTD"
ORIGIN      
        1 gcccgctgcg ctgacgtagc ccgcccgacg gcgcgggcac ggagcacggg agcgcggacc
       61 ccgtaacgca gcgcggggcg gggccgtcag cggcgcgcga ggtgcggcgg cggccgcctc
      121 ccgggggcgg ggcggtagcg cgcggccgct cggcgccggt tccggtccgt cggtgactgc
      181 ggacgttgcg gggtcggagg agcgccgggc gcgccatggc cgcagccgcg tggatgcccg
      241 cggtttcccg actgctcggt gctttcaaaa accaaaaaca ggtgaccaga agttttagta
      301 gtgctgtaca aacggtgact ttaatcccag gagatggcat aggacctgag atttctgctg
      361 ctgtcatgaa gatctttgat gctgccaaag ttcctattca gtgggaagaa aggaatgtta
      421 cagcaatcca aggaccagga ggaaagtgga tgatacctcc agatgccaaa gaatccatgg
      481 ataaaaacaa aatgggatta aaagggccct taaaaacccc aatcgctgca gggcacccct
      541 cgatgaatct gctgctgcgt aaaacctttg acctctatgc aaacgtccgt ccctgcgtct
      601 caattgaggg gtacaaaacc ccttacacag acgtaaatat cgtcacgata cgagagaaca
      661 cagaaggcga atacagtggg attgagcatg tgattgttga aggcgttgtg caaagcatca
      721 agctaatcac agaggaagct agcaagcgca ttgcagagtt tgcttttgag tatgctagaa
      781 ataaccagag aagccatgtt actgctgtgc acaaggcaaa tattatgaga atgtctgatg
      841 ggcttttctt gagaaaatgc agggaagcag cagaaaactg taaagacatt aaatttaatg
      901 aaatgtatct ggatactgtg tgtctgaata tggttcagga tccttcacaa tttgatgtgc
      961 ttgttatgcc taacttgtat ggtgacatcc tcagtgactt gtgtgctgga ttgattggag
     1021 gtcttggagt aacaccaagt ggaaatattg gtgctaacgg agttgccatt tttgaatcgg
     1081 ttcatggaac agcacctgat attgcaggaa aagacttggc aaatccaact gctcttctcc
     1141 tgagcgctgt aatgatgctg cgtcatatgg gactacacaa gcatgccaca aaaatcgaga
     1201 cagcttgctt tgatacaatt aaagatggaa aggccttgac aaaagacttg ggtggcaatg
     1261 ccaagtgttc agagttcaca gaagagatct gcagcagagt acgggacaca gactaaactt
     1321 ctcatttgat tcatattaac tctgaaaaga tgcatcacaa acatgcagta tgtaacccgg
     1381 tatccatatg catatatttt gctcttctct taagagagca aactttatag ggaaggcctc
     1441 ttcattaata aatttagtcc ccatggctcc agatgatgct tgtgcctgct ttcagtggac
     1501 tttaagtgct ctgtcttatt tatttgattc tacctggtaa gcatttttat gtaagagaag
     1561 tattttttgc cactgtagct gtctactgtt tgctgtttca actagatggt ttttattttt
     1621 cacaaagaaa aattatgtga atataacata accagaacta gtgaattgct acagcacctt
     1681 aatgcttaga gcctgtgtta ttggtcttac tgaaatttaa aggataggct tttggcctaa
     1741 caagagcaca agataaacat tataaaaaga aacgggtata aactaattta aaatagcaat
     1801 tgtgtgttaa aagcaatgaa agaacacttc tgggtgctct gttgattgat gaaatactgc
     1861 tttgtcttca aaggacatga aaaaaagaaa tgcaaaatct tagagattta atctatttat
     1921 gtttatacag aaaaaaggca tcaaaccagc tggatgtgag aattgatatt aacaaaaata
     1981 tttttcaaat ctctatcaaa atagctctca taagttttcc tttctgaaat gcagcttaat
     2041 ttacaagagt tgtaatgaga gtaatttaga aaaactcatt cctgctctgt attatgaagg
     2101 gaagttatta actgcaccag tttatacaaa atatttcatg gcttctgctg gattgctttt
     2161 tgtgttatac tttgttttta tgaagcctgc tcagtgtgtt tcactgcgct gactagtgat
     2221 tttactctat aaactctgaa tgtaaaagac tagtcctgat ggaatgaaga cagattgaag
     2281 gtctggctct ggttcctatg ttccagaaat acatttcatc cctattcaag ggatcagaga
     2341 cttctttctt ctcctgcttc ctaagcctaa taagcaccaa agcacctctt tctttttttt
     2401 ttccctccct tcttcatcac atacaggtaa tcatgagccg ttctgacctg gatttcttaa
     2461 gggtatgctg ctcttagtat atccttccag aaaatgcaca ttcgtaaaac ttgtggccaa
     2521 cacaggttta tacctactgc cagagccaga tgtcttaaag cttaattgta tttataggta
     2581 ttatgcctct tagttacttt ctactgaggc tgttcaggct ggttatttca gaatcaaaac
     2641 tattttgaat aatgtcttct agcagaactc tatgaagtaa gcaacacact tttttgtaca
     2701 gcctaacaac gtgttggagg agggacagta agctttgttt cttgtgctct ctgcttttgg
     2761 tgaatagggt atcatttcct tctgtgtttt acaagctgct gcttccttgt ttcctctaga
     2821 ttaatcttaa gatcttctgc agtaccatta cgcacaaaat ggggaaaaaa aataactttt
     2881 tgaagaccta aaaaaaaaaa aaaaa
//

LOCUS       NM_205405               5027 bp    mRNA    linear   VRT 06-JAN-2017
DEFINITION  Gallus gallus complement component 3 (C3), mRNA.
ACCESSION   NM_205405 XM_001236913
VERSION     NM_205405.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 5027)
  AUTHORS   Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
  TITLE     Splenic gene expression profiling in White Leghorn layer inoculated
            with the Salmonella enterica serovar Enteritidis
  JOURNAL   Anim. Genet. 46 (6), 617-626 (2015)
   PUBMED   26358731
REFERENCE   2  (bases 1 to 5027)
  AUTHORS   Haynes T, Luz-Madrigal A, Reis ES, Echeverri Ruiz NP,
            Grajales-Esquivel E, Tzekou A, Tsonis PA, Lambris JD and Del
            Rio-Tsonis K.
  TITLE     Complement anaphylatoxin C3a is a potent inducer of embryonic chick
            retina regeneration
  JOURNAL   Nat Commun 4, 2312 (2013)
   PUBMED   23942241
  REMARK    GeneRIF: C3a is sufficient to induce complete regeneration of the
            embryonic chick retina from stem/progenitor cells present in the
            eye, independent of fibroblast growth factor receptor signaling.
REFERENCE   3  (bases 1 to 5027)
  AUTHORS   Liu D and Niu ZX.
  TITLE     Cloning of a gene fragment encoding chicken complement component
            C3d with expression and immunogenicity of Newcastle disease virus F
            gene-C3d fusion protein
  JOURNAL   Avian Pathol. 37 (5), 477-485 (2008)
   PUBMED   18798021
REFERENCE   4  (bases 1 to 5027)
  AUTHORS   Fu J, Lin G, Zeng B, Wu Z, Wu Y, Chu H, Qin G, Liang G, Li J, Gan
            X, Yu X, Li C and Liu D.
  TITLE     Anti-ischemia/reperfusion of C1 inhibitor in myocardial cell injury
            via regulation of local myocardial C3 activity
  JOURNAL   Biochem. Biophys. Res. Commun. 350 (1), 162-168 (2006)
   PUBMED   16996480
  REMARK    GeneRIF: Complement C1 Inactivator Proteins, in addition to
            inhibition of the systemic complement activation, prevents
            myocardial cell injury via a direct inhibitory role in the local
            myocardial C3 activity
REFERENCE   5  (bases 1 to 5027)
  AUTHORS   Recheis B, Rumpler H, Schneider WJ and Nimpf J.
  TITLE     Receptor-mediated transport and deposition of complement component
            C3 into developing chicken oocytes
  JOURNAL   Cell. Mol. Life Sci. 62 (16), 1871-1880 (2005)
   PUBMED   16041564
  REMARK    GeneRIF: C3 is transported into oocytes by LR8-mediated
            endocytosis.
REFERENCE   6  (bases 1 to 5027)
  AUTHORS   Mavroidis M, Sunyer JO and Lambris JD.
  TITLE     Isolation, primary structure, and evolution of the third component
            of chicken complement and evidence for a new member of the alpha
            2-macroglobulin family
  JOURNAL   J. Immunol. 154 (5), 2164-2174 (1995)
   PUBMED   7532662
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04001210.1 and U16848.1.
            On Jan 6, 2017 this sequence version replaced gi:45382302.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                AADN04001210.1     7062-7157
            97-289              AADN04001210.1     9895-10087
            290-449             AADN04001210.1     12264-12423
            450-520             AADN04001210.1     13480-13550
            521-615             AADN04001210.1     13637-13731
            616-698             AADN04001210.1     13873-13955
            699-789             AADN04001210.1     14056-14146
            790-892             AADN04001210.1     14966-15068
            893-1013            AADN04001210.1     15789-15909
            1014-1129           AADN04001210.1     16251-16366
            1130-1276           AADN04001210.1     16801-16947
            1277-1489           AADN04001210.1     18032-18244
            1490-1684           AADN04001210.1     18340-18534
            1685-1843           AADN04001210.1     19569-19727
            1844-1973           AADN04001210.1     19816-19945
            1974-2045           AADN04001210.1     20174-20245
            2046-2243           AADN04001210.1     20424-20621
            2244-2355           AADN04001210.1     21290-21401
            2356-2441           AADN04001210.1     21774-21859
            2442-2581           AADN04001210.1     22179-22318
            2582-2794           AADN04001210.1     22390-22602
            2795-2861           AADN04001210.1     22904-22970
            2862-2948           AADN04001210.1     23370-23456
            2949-3152           AADN04001210.1     23543-23746
            3153-3228           AADN04001210.1     24151-24226
            3229-3388           AADN04001210.1     24306-24465
            3389-3484           AADN04001210.1     24648-24743
            3485-3635           AADN04001210.1     24851-25001
            3636-3799           AADN04001210.1     25937-26100
            3800-3958           AADN04001210.1     26882-27040
            3959-4109           AADN04001210.1     27264-27414
            4110-4161           AADN04001210.1     28185-28236
            4162-4249           AADN04001210.1     28571-28658
            4250-4339           AADN04001210.1     28825-28914
            4340-5027           U16848.1           4339-5026
FEATURES             Location/Qualifiers
     source          1..5027
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
     gene            1..5027
                     /gene="C3"
                     /gene_synonym="C3d"
                     /note="complement component 3"
                     /db_xref="CGNC:8744"
                     /db_xref="GeneID:396370"
     CDS             26..4981
                     /gene="C3"
                     /gene_synonym="C3d"
                     /EC_number="3.4.21.43"
                     /note="complement C3 alpha chain; complement component 3d"
                     /codon_start=1
                     /product="complement C3 precursor"
                     /protein_id="NP_990736.2"
                     /db_xref="CGNC:8744"
                     /db_xref="GeneID:396370"
                     /translation="MGLLLLPLLLGVLLLHAVPTPAQMVTMVTPAVLRLDTDEKVVLE
                     APGLSAPTEANILVQDFPQKRKVLFQVRKQLNPAEGMMAIATVKVPVKLLPPVVGKHF
                     VSVVARVGQVTLEKVLLVSLQSGHIFLQTDKPIYTPGSTVLCRLFALSHFMQPLLKTV
                     IVEVKTPDNVIIKQVPVSSPMRNGIFSINHNLPEVVSLGTWTITAKFEDSQDQVFSTQ
                     FEVKEYVLPSFEVTLDPQEKFLYIDRQEDFRVTITARYLYGKNLQGTAFVLFGVVVDD
                     EKKTIPQSLQRVKVTDGDGEAVLPMAMLRQRFANLQELVGHSLYVTVTVLTESGSDMV
                     EAQRSGIRIVTSPYTIHFTHTPKYFKPGMPFDLTVYVTNPDNSPAPRIPVKADNFQGL
                     VSTQRDGTAKLVLNMPANKNSVPITVRTDQKDLPPERQASRQIVAEAYQSQGNSGNYL
                     HLAVGASQVQPGDNLPINFHLKSNRDDVRKSVSYFTYLILSKGHIVHVGRQPREGDQS
                     LVTMSLPVTANLIPSFRIVAYYHVKPGEIIADSVWVDVKDTCMGSLVVRGASEADNRV
                     HEPRTPMRLHIEGDHKAHVGLVAVDKAVYVLNKNKLTQSKVWDTVENSDIGCTPGSGR
                     NHVGVFADAGLSLTSNVNINTEQRSEVQCAKPAKRKRRSVRLIKHKGTKMAEYSDKNL
                     RKCCEDGMKENLMGYSCEKRATYVLDGKACTEAFLSCCLYIKGIRDEERELQYELARS
                     EVDDAFLSDEDITSRSLFPESWLWQVEELTEPPNEQGISMKTLPIYLKDSITTWEVLA
                     VSISENKGLCVADPYEITVMKEFFIDLRLPYSAVRNEQVEVRAILYNYWTNKIKVRVE
                     LMYNPALCSASTTKTRYQQIFQLEPQSSHAVPFVIVPLQLGQHDVEVKAAVWNSFVSD
                     GVKKKLRVVPEGMRLEKTVKIVELDPKTLGNNGVQEVKVKAANLSDIVPNTESETKVS
                     IQGNPVSILVEKATDGTKLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDSTMQWETFGI
                     NRRTEAIELIKKGYTQQLAYRKEDGSFAAFTTRPSSTWLTAYVAKVFAMAINMVDIKP
                     EVVCGAIKWLILEKQQPDGLFQEDAPVIHKEMVGGYHGAEPSVSLTAFVLSALQESQK
                     ICKNYVKSLDGSIAKASDYLSRKYQSLTRPYTVALTSYALALTGKLNSEKVLMKFSKD
                     GTHWAERNAHTYNIEGTSYALLALLQMEKAELTGPVVRWLAQQNYFGGGYGSTQATIL
                     VFQALAQYHVALPRQLELNLDVSVLLPRRANAITYRIENNNALVARSAETKLNEDFTV
                     KAEGTGKGTMTVVTVYNAKVPEKENKCDNFDLRVSVEDVKAGRELEGVIRSVKITICT
                     RFLDTVDATMSILDISMLTGFSPDVQDLKSLSEGVERYISKFEIDHALSNRSNLIIYL
                     DKVSHQVEECIAFRAHQHFQVGLIQPASVIVYSYYKIDDRCTRFYHPDKAGGQLRKIC
                     HGEVCCAEENCFIRVKKDNPITVNERIDLACKPGVDYVYKVKVVATEETPSHDNYIMS
                     ILTVIKMGTDENPGGSNRTFVSHKQCRDALSLQKGQDYLVWGLASDLWVTGSRFSYLI
                     SKDTWLEAWPLEESCQDADLQPLCQDFTEFSDNLVLFGCPT"
     sig_peptide     26..76
                     /gene="C3"
                     /gene_synonym="C3d"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 cccgcgtccc catccccgct cagccatggg gctgctgctg ctgcccctcc tgctcggcgt
       61 tctgctgctc catgcggtcc ccacacctgc acagatggtg accatggtga ccccggcggt
      121 gctgcggttg gacacggacg agaaggtggt gttggaggct ccgggtctgt ccgcccccac
      181 cgaggccaac atcctggtgc aggatttccc ccaaaagcgc aaagtcctct tccaggtccg
      241 caagcagctc aaccccgcag aggggatgat ggccatcgcc accgtcaagg tgccggtgaa
      301 gctgctgccg ccggtggtgg ggaagcactt tgtctcggtg gtggcgcggg tgggacaggt
      361 gaccctggag aaggtgctgt tggtgtcact gcagagcggc cacatcttcc tgcagaccga
      421 caaacccatc tacacccccg gctccaccgt gctctgccgt ctcttcgccc tcagccactt
      481 catgcagcct ctgctgaaga cggtgatcgt ggaggtcaag acacccgaca acgtcatcat
      541 caagcaagtg cccgtgtcct cccccatgag gaatgggatc ttctccatca accacaacct
      601 gccggaggtg gtcagcctgg ggacatggac tatcacggcc aaatttgaag actcgcagga
      661 ccaggtcttc agcacacaat ttgaagtcaa ggaatacgtg ctgccgagct ttgaggtcac
      721 cctggacccg caggagaagt tcctctacat tgaccggcag gaggatttcc gggtgaccat
      781 cacagccagg tacctgtatg ggaagaatct gcaggggacc gccttcgtcc tcttcggtgt
      841 ggtggtggac gacgagaaaa agaccatccc ccagtccctg cagcgcgtca aggtgaccga
      901 tggggacggg gaggccgtgc tgcccatggc catgctgcgg cagcgcttcg ccaacctcca
      961 ggagctggtg ggacactctc tctacgtcac cgtcaccgtc ctcaccgagt caggcagtga
     1021 catggtggag gcacagcgca gcggcatccg catagtgacg tccccataca ccatccactt
     1081 cacccacacc cccaagtact tcaagccagg gatgcccttc gatctgacgg tttatgtcac
     1141 caaccccgat aattccccgg ctccgcgcat ccccgtcaag gccgacaact tccagggcct
     1201 cgtctccacg cagcgagatg gcacagccaa gctggtcctc aacatgccag ccaacaagaa
     1261 ctccgtcccc atcactgtga ggacagacca gaaggatctg cccccggagc gccaggcctc
     1321 gcggcagata gtggccgagg cgtatcaaag ccaggggaac tctggcaact accttcacct
     1381 ggcagtgggt gccagccagg tgcagcccgg ggacaacctc cccatcaact tccatctcaa
     1441 gagcaacaga gatgacgtcc gcaaatccgt ttcctacttc acctacctga tcctgagcaa
     1501 ggggcacatt gtccacgtgg gacggcagcc aagggaaggt gaccagagcc tggtcacgat
     1561 gtcgcttccc gtgacggcca acctcatccc ttccttccgt atcgtggcct actaccacgt
     1621 gaagcctggc gagatcattg ctgactccgt ctgggtcgat gtcaaggaca cctgcatggg
     1681 cagtctggtg gtgaggggag cgtcggaggc tgacaatcgt gtgcatgagc caaggacccc
     1741 catgcggctg cacatcgagg gcgaccacaa agcccacgtg gggctggtgg ctgtggacaa
     1801 ggctgtctat gtcctcaaca agaacaaact cactcagagt aaggtgtggg acacagtgga
     1861 gaacagcgac atcggctgca cgccgggcag tgggaggaac cacgtggggg tcttcgccga
     1921 tgccggcctc agcctgactt caaacgtgaa catcaacacg gagcagagaa gtgaggtcca
     1981 gtgtgcaaag cctgcaaaac gcaagcgccg ctccgtgagg ctcatcaagc acaagggcac
     2041 caagatggcc gagtacagcg acaagaacct gcgcaagtgc tgtgaggacg gcatgaagga
     2101 aaacctgatg ggctacagct gcgagaaacg ggccacctac gtcctcgatg gcaaagcctg
     2161 caccgaagcc ttcctcagct gctgcctcta catcaagggc atccgcgatg aggagcgcga
     2221 gctgcaatac gagctggctc gaagtgaggt ggatgacgcc ttcctgagtg atgaagacat
     2281 cacctcacgg agcctctttc cagagagctg gctatggcag gtggaggagc tgacagaacc
     2341 acccaatgaa cagggcatct ccatgaagac gctgcccata tacctgaaag actccatcac
     2401 cacctgggag gttctggctg tcagtatctc tgagaacaag ggtctgtgcg tggccgaccc
     2461 ctatgagatt acggtgatga aggagttctt cattgacctg cgcctgccct actcggcagt
     2521 gaggaacgag caggtggagg tccgcgccat tctctacaac tactggacga acaagatcaa
     2581 ggtgcgcgtg gagctgatgt acaacccagc cctgtgcagc gcatccacca ccaagacgcg
     2641 ctaccagcag atcttccaac tggaacctca gtcgtcgcac gccgtgccct tcgtcatcgt
     2701 gcccctgcag ctggggcagc atgacgtcga ggtgaaggca gctgtctgga acagctttgt
     2761 gtctgatggc gtcaagaaga agctcagagt ggtgcctgaa gggatgaggc tggagaagac
     2821 agtgaagata gtggagcttg acccaaagac gctgggaaat aacggtgtgc aagaagtgaa
     2881 ggtgaaagca gcaaacctct ctgacatcgt ccccaacact gagtcggaga ccaaagtcag
     2941 cattcaaggc aaccctgtgt ccatcctggt ggagaaagcc accgatggga ccaagctgaa
     3001 acacctcatt gtgaccccct cgggctgtgg ggagcagaac atgattggga tgacgcccac
     3061 cgtcattgct gtccactacc tggacagcac aatgcagtgg gagaccttcg gtatcaaccg
     3121 ccgcactgaa gccatcgaac tgattaaaaa gggttacacc caacaacttg cataccgcaa
     3181 agaagacggc tcatttgctg ccttcactac ccgcccatcg agcacctggt tgacagccta
     3241 cgtggccaag gtctttgcca tggccatcaa catggtggac atcaagccgg aggtggtttg
     3301 tggagccatc aaatggctca ttctggagaa gcaacagcca gatgggcttt tccaagaaga
     3361 cgctcctgtc atccacaagg agatggtggg aggctaccac ggtgctgagc ccagtgtgtc
     3421 cctgacagcc ttcgtcctct ccgcgctgca ggaatcccag aagatctgca agaactacgt
     3481 gaaaagcctg gatgggagca ttgccaaagc ctccgattac ctctcccgga aataccaatc
     3541 tttgactcga ccctacacgg tggccctgac ctcctacgcc ctggccctaa cggggaaact
     3601 caacagcgag aaagtcctga tgaagttctc caaagatggc acccactggg cggaacgcaa
     3661 cgcccacacc tacaacatcg aggggacgtc ctacgctctg ctggcgctgc tgcagatgga
     3721 gaaggccgag ctgacggggc cggtggtccg ctggttggcc cagcagaact acttcggtgg
     3781 tggctacgga tccacccagg ccaccatcct ggtgttccag gctctggctc agtaccacgt
     3841 ggcgctgccg cggcagctgg agctcaacct ggacgtgtcg gtgctgctgc cgcgccgcgc
     3901 caacgccatc acctaccgca tcgagaacaa caacgcgctg gtggcacgct cagctgagac
     3961 caagctgaac gaggacttca ctgtgaaagc agagggcact ggcaagggga caatgacagt
     4021 ggtgaccgtc tacaacgcca aagtgcccga gaaggaaaac aagtgtgaca acttcgacct
     4081 gcgggtcagc gtggaggacg tgaaggcggg ccgggagctg gaaggggtca tccgctctgt
     4141 caagatcacc atctgcacca ggttcctgga caccgtggat gccaccatgt ccatccttga
     4201 tatctccatg ctcaccggct tctcccctga cgtccaggac ctgaagagtc tctcggaggg
     4261 agtggagagg tacatttcca aatttgagat cgaccacgcg ctgtcgaacc gcagcaacct
     4321 catcatctac ctggacaagg tctcccacca agtggaggag tgcatcgcct tcagggccca
     4381 ccagcacttc caggtgggac tgatccagcc cgcctccgtc attgtctaca gctactacaa
     4441 gatcgatgac cgctgcaccc gcttctacca cccggacaag gctggtgggc agctgaggaa
     4501 gatctgccat ggggaagtgt gctgcgctga agaaaactgc ttcatacggg tgaagaagga
     4561 caatcccatc acagtcaatg agcgcatcga ccttgcctgc aagccagggg tggactatgt
     4621 gtacaaagtg aaggtggtgg caacagagga gacgccatcc cacgacaact acatcatgtc
     4681 catcctcacc gtcatcaaga tgggcactga tgagaaccca ggtgggagca accggacctt
     4741 cgtgagccat aagcagtgcc gggatgcatt gagtctccag aagggacagg actacctggt
     4801 gtgggggctg gcgtccgacc tgtgggtcac cggcagccgc ttctcctacc tcatcagcaa
     4861 ggacacgtgg ctggaagcgt ggcccttgga ggagtcgtgc caggatgccg acctgcagcc
     4921 gctctgccag gacttcaccg agttctccga caatctggtc ttgtttgggt gccccacctg
     4981 atgggtgacc ccaacccgat ggtgacccca acccgatggg tgtccct
//

LOCUS       NM_205387                422 bp    mRNA    linear   VRT 06-JAN-2017
DEFINITION  Gallus gallus bone gamma-carboxyglutamate protein (BGLAP), mRNA.
ACCESSION   NM_205387
VERSION     NM_205387.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Neugebauer BM, Moore MA, Broess M, Gerstenfeld LC and Hauschka PV.
  TITLE     Characterization of structural sequences in the chicken osteocalcin
            gene: expression of osteocalcin by maturing osteoblasts and by
            hypertrophic chondrocytes in vitro
  JOURNAL   J. Bone Miner. Res. 10 (1), 157-163 (1995)
   PUBMED   7747623
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Carr,S.A., Hauschka,P.V. and Biemann,K.
  TITLE     Gas chromatographic mass spectrometric sequence determination of
            osteocalcin, a gamma-carboxyglutamic acid-containing protein from
            chicken bone
  JOURNAL   J. Biol. Chem. 256 (19), 9944-9950 (1981)
   PUBMED   6792200
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000860.1.
            On Jan 6, 2017 this sequence version replaced gi:46195456.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                AADN04000860.1     21636-21714         c
            80-112              AADN04000860.1     21050-21082         c
            113-179             AADN04000860.1     20875-20941         c
            180-422             AADN04000860.1     20519-20761         c
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="25"
                     /map="25"
                     /breed="Red Jungle Fowl"
     gene            1..422
                     /gene="BGLAP"
                     /gene_synonym="BGP"
                     /note="bone gamma-carboxyglutamate protein"
                     /db_xref="CGNC:49764"
                     /db_xref="GeneID:396348"
     CDS             19..312
                     /gene="BGLAP"
                     /gene_synonym="BGP"
                     /note="osteocalcin; gamma-carboxyglutamic acid-containing
                     protein; bone Gla protein; bone gamma-carboxyglutamate
                     (gla) protein (osteocalcin)"
                     /codon_start=1
                     /product="osteocalcin preproprotein"
                     /protein_id="NP_990718.2"
                     /db_xref="CGNC:49764"
                     /db_xref="GeneID:396348"
                     /translation="MKAAALLLLAALLTFSLCRSAPDGSDARSAKAFISHRASAEMVR
                     RQKRHYAQDSGVAGAPPNPLEAQREVCELSPDCDELADQIGFQEAYRRFYGPV"
     sig_peptide     19..78
                     /gene="BGLAP"
                     /gene_synonym="BGP"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 ctgcagtgga gctgcaccat gaaggccgcg gctctgctgc tcctcgcggc gctgctcaca
       61 ttcagcctct gccgcagcgc gccggacggc tcggatgctc gcagtgctaa agccttcatc
      121 tcccaccgcg ccagcgccga gatggtgcgc aggcagaagc ggcactacgc ccaggacagc
      181 ggcgtcgccg gagctccccc caaccccctg gaggcccaac gagaggtgtg tgagctgagc
      241 cccgactgcg acgagttggc cgaccagatc ggcttccagg aggcgtaccg ccgcttctac
      301 ggccccgtct gagccccccc ggggctcaac gccccctccc cacccccacc tccccccact
      361 ccccccatta tgctccactt ctccgcgaag gatggacaga aataaaggca gagcgcaggg
      421 ca
//

LOCUS       NM_001115017            5206 bp    mRNA    linear   VRT 05-JAN-2017
DEFINITION  Gallus gallus selenoprotein O (SELENOO), mRNA.
ACCESSION   NM_001115017 XM_415989
VERSION     NM_001115017.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 5206)
  AUTHORS   Gladyshev VN, Arner ES, Berry MJ, Brigelius-Flohe R, Bruford EA,
            Burk RF, Carlson BA, Castellano S, Chavatte L, Conrad M, Copeland
            PR, Diamond AM, Driscoll DM, Ferreiro A, Flohe L, Green FR, Guigo
            R, Handy DE, Hatfield DL, Hesketh J, Hoffmann PR, Holmgren A,
            Hondal RJ, Howard MT, Huang K, Kim HY, Kim IY, Kohrle J, Krol A,
            Kryukov GV, Lee BJ, Lee BC, Lei XG, Liu Q, Lescure A, Lobanov AV,
            Loscalzo J, Maiorino M, Mariotti M, Sandeep Prabhu K, Rayman MP,
            Rozovsky S, Salinas G, Schmidt EE, Schomburg L, Schweizer U,
            Simonovic M, Sunde RA, Tsuji PA, Tweedie S, Ursini F, Whanger PD
            and Zhang Y.
  TITLE     Selenoprotein Gene Nomenclature
  JOURNAL   J. Biol. Chem. 291 (46), 24036-24040 (2016)
   PUBMED   27645994
REFERENCE   2  (bases 1 to 5206)
  AUTHORS   Mariotti M, Ridge PG, Zhang Y, Lobanov AV, Pringle TH, Guigo R,
            Hatfield DL and Gladyshev VN.
  TITLE     Composition and evolution of the vertebrate and mammalian
            selenoproteomes
  JOURNAL   PLoS ONE 7 (3), E33066 (2012)
   PUBMED   22479358
REFERENCE   3  (bases 1 to 5206)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AADN04000481.1.
            On Jan 5, 2017 this sequence version replaced gi:1071347966.
            
            Summary: This gene encodes a selenoprotein containing the rare
            amino acid, selenocysteine (Sec). Sec is encoded by the UGA codon,
            which normally signals translation termination. The 3' UTRs of
            selenoprotein mRNAs contain a conserved stem-loop structure,
            designated the Sec insertion sequence (SECIS) element, that is
            necessary for the recognition of UGA as a Sec codon, rather than as
            a stop signal. The exact function of this selenoprotein is not
            known, but it is thought to have redox activity. [provided by
            RefSeq, Jan 2017].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            protein contains selenocysteine :: inferred from conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-580               AADN04000481.1     98952-99531
            581-784             AADN04000481.1     100620-100823
            785-965             AADN04000481.1     101605-101785
            966-1096            AADN04000481.1     105511-105641
            1097-1377           AADN04000481.1     106033-106313
            1378-1528           AADN04000481.1     106627-106777
            1529-1714           AADN04000481.1     107159-107344
            1715-1871           AADN04000481.1     107853-108009
            1872-5206           AADN04000481.1     108660-111994
FEATURES             Location/Qualifiers
     source          1..5206
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Red Jungle Fowl"
     gene            1..5206
                     /gene="SELENOO"
                     /gene_synonym="SELO"
                     /note="selenoprotein O"
                     /db_xref="CGNC:50587"
                     /db_xref="GeneID:417745"
     CDS             48..2060
                     /gene="SELENOO"
                     /gene_synonym="SELO"
                     /note="UGA stop codon recoded as selenocysteine"
                     /codon_start=1
                     /transl_except=(pos:2049..2051,aa:Sec)
                     /product="selenoprotein O"
                     /protein_id="NP_001108489.3"
                     /db_xref="CGNC:50587"
                     /db_xref="GeneID:417745"
                     /translation="MAAALRRRRSVLSLRVFCTAMQRSAGPPSRPGSPERADGGGWLS
                     ALRFDNLALRSLPVDPSEDCAPRAVPGACFARVRPTPLRNPRLVAMSAPALALLGLEA
                     GGPEAEREAEAALYFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPR
                     GARWELQLKGAGITPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSE
                     VVRDIFYDGNPKKERCTVVLRIASTFIRFGSFEIFKPPDEYTGRKGPSVNRNDIRIQM
                     LDYVIGTFYPEIQEAHADNSIQRNAAFFKEITKRTARLVAEWQCVGFCHGVLNTDNMS
                     IVGLTIDYGPFGFMDRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPL
                     EISELILEEEYDAEFEKHYLQKMRKKLGLIQLELEEDSKLVSELLETMHLTGGDFTNI
                     FYLLSSFSVDTDPSRLEDFLEKLISQCASVEELRVAFKPQMDPRQLSMMLMLAQSNPQ
                     LFALIGTKANINKELERIEQFSKLQQLTAADLLSRNKRHWTEWLEKYRVRLHKEVESI
                     SDVDAWNTERVKVMNSNNPKYILRNYIAQNAIEAAENGDFSEVRNVLKLLENPFQETE
                     DSTEMETKEEEATATAAACAQATRSRLSYCSKPPLWASELCVTUSS"
     misc_feature    2049..2051
                     /gene="SELENOO"
                     /gene_synonym="SELO"
                     /note="Selenocysteine; other site"
     stem_loop       2364..2438
                     /gene="SELENOO"
                     /gene_synonym="SELO"
                     /note="SECIS_element"
     regulatory      5171..5176
                     /regulatory_class="polyA_signal_sequence"
                     /gene="SELENOO"
                     /gene_synonym="SELO"
     polyA_site      5206
                     /gene="SELENOO"
                     /gene_synonym="SELO"
ORIGIN      
        1 ctgcggctgt gcggagcggc gggcggggcc tctccggggg cgggcggatg gccgcggcgc
       61 tgcgccgccg ccgctcggtg ctgtcgctgc gcgtcttctg caccgccatg cagcgctcgg
      121 cgggtcctcc gtcgcggccg ggcagccccg agcgggcgga cggggggggc tggctgagcg
      181 cgctgcgctt cgacaacctg gcgctgcgct cgctgccggt cgacccttcc gaggactgcg
      241 ctccgcgagc cgtgcccggc gcctgcttcg cccgggtgcg gcccaccccg ctgcgcaacc
      301 cgcggctcgt ggccatgtcg gcgcccgcgc tggcgctgct ggggctggag gccggcggcc
      361 ccgaagccga gcgggaggcg gaggccgccc tgtacttcag cgggaaccga ctgctgcccg
      421 gctcggagcc cgcggcgcac tgctactgcg ggcaccagtt cggcagcttc gcggggcagc
      481 tgggtgacgg cgccgccatc tacctgggcg aggtgcgcgg accgcgcggc gcccgctggg
      541 agctgcagct gaagggcgcc gggatcaccc ccttctcccg gcaagccgat ggtcggaagg
      601 tcctgcggtc aagcatacgg gagttcctgt gcagcgaggc catgttccac cttggaattc
      661 caacaacgag ggctggaacc tgtgtgacat ctgactcaga agttgttcgt gacatatttt
      721 atgatggaaa tccaaaaaaa gaaaggtgta cagttgttct gaggatagct tctacattta
      781 taagatttgg ttcttttgag attttcaaac cccctgatga gtatacagga cgcaaaggtc
      841 ccagcgttaa ccggaatgat attcggatac agatgctgga ttacgtgatc ggcactttct
      901 acccagaaat ccaggaggcg catgcagaca acagcattca gaggaatgca gctttcttca
      961 aggagataac aaagcggacg gcaagattgg ttgctgagtg gcagtgtgtt ggcttttgcc
     1021 atggtgtgct gaatacggat aacatgagca tagttggact aactattgac tatggccctt
     1081 ttggatttat ggacagatat gaccctgagc acatctgcaa tggctctgat aacacagggc
     1141 gctatgctta caacaaacag ccagagattt gcaagtggaa tctagggaag cttgctgaag
     1201 ccttagtccc agagctgccc ttggaaataa gtgagctcat cctggaagaa gaatatgatg
     1261 cagaatttga aaaacattat ttgcagaaga tgaggaagaa actaggccta attcagttgg
     1321 aattagaaga agatagtaag ctggtgtctg aactacttga aaccatgcat ctcacaggtg
     1381 gagacttcac aaatattttt tacttgctga gttcattctc agtagatact gatccttcaa
     1441 gactggaaga tttcttagaa aagcttatca gtcagtgtgc ttcagtggaa gaactgagag
     1501 ttgctttcaa acctcagatg gatccaagac aactgtcaat gatgttgatg ttggctcagt
     1561 ctaatcctca gctgtttgca ctcattggaa caaaagctaa tataaataaa gaattagaac
     1621 gcatcgaaca attctctaaa ctgcagcagt taacagcagc tgatttactc agcagaaata
     1681 aaaggcactg gacagaatgg ctggagaaat acagagtccg tttacacaaa gaagtagaaa
     1741 gcattagtga tgttgatgcc tggaatactg aacgtgtgaa ggttatgaat tccaacaatc
     1801 caaaatacat cttgagaaac tacattgctc agaatgccat agaagcagct gaaaatgggg
     1861 atttctcaga ggtgagaaat gtattgaaac tcttggaaaa tccattccaa gaaacagaag
     1921 attccacgga gatggagaca aaagaggagg aagcaactgc tacagcagct gcttgtgctc
     1981 aagcaaccag aagcaggctg tcgtattgca gtaaacctcc actctgggct tcagagctct
     2041 gtgttacatg atcttcgtaa ctgccttgtt ttattttttg ctgtaagctg aagactgtga
     2101 tcctccttca gcagtgaaga attgagcaag gcaacaatcg aagtgctatt aagttattga
     2161 aacaacccta catttggatg cacctacaac agtcttcagc tgtgcttatt ttagagcagt
     2221 ttcggatcct tggaacgagc tgataatgct ggacagtctg tacaaatcgt ttctctgtgt
     2281 gttttgagac tgaaagcctt ccctttattc ataacacatt gcagtgtttt ctgttgagac
     2341 ccgctgactt ttgaacatcc aaatggagtt gttacgtgaa gacaaaagta tcaagtcagg
     2401 aatctgatct gtttttgtct gatgtcttaa ctaatagtac ttctaacatc tattcgctgc
     2461 tctttctatg cagggatttc tgctcctcta taacagagga atagattcag cgatgcttgt
     2521 tttaagccat gattcagtta attagttcat ttattgtgaa cctttaggtt gatatttaat
     2581 ctttattttc acagagtctg caggcagggg gctgaggggg aaatgaacaa acgggtgggt
     2641 tttgttcttt tttgtgttct attatgtata atacataaag agcagaattg agggagactg
     2701 tatatttgca cttgaaaacc ttggtggtga agtcagttca gattcacaat gtttacgtac
     2761 agtatacacg tgtgtaaatg tttgcaaaag ccatggatgc agtttgtaag ccagctgtaa
     2821 gttgactcag gcaaattcag ttgcctaatt gagcacgaat tgtacgggtg accccagaac
     2881 tcacatacgg gttccttgcg ttgatctgtg tactgctgcc acagttctcc ttgagagaag
     2941 cacgcagctg ggatgcctgt tcacagtggg cagtgagatg cttccattcc cactgtggtc
     3001 cggcgtgtct tactttgctt ctgtggcttt tgagaagttt tacactgtaa agagaggaac
     3061 gtactacttg aggaatgtgc tatttgagca gtgtgtaaaa gattctagag gaggacggga
     3121 gctgacttgc ttgaaaatgt attgataata tttcagttgg tttcatttga gattttaggg
     3181 ggaaatctgt ttcttctatt gccatgtcgg caaaaatgaa agaaggtccc aagttaaagg
     3241 tttgactgtg ctttctgagc ttatttctga agggctctgg ttcacatatc cttgtgcaag
     3301 tctgatgtgg tgcaaaggtt tctcttttct aaagaggcca ctgtcttcca ctgtgagttt
     3361 aagggcagtc tactaaatag ctctttgccc ctgtacaggt caggtattag ctcaggttga
     3421 aatgtgctct tttaagtctt cctcaaataa cgagctatgg agaaacaggg agaaagctgg
     3481 actgctgcct gtccagttct gctaataatg agtttgttct tgctgccgca gtaaataggt
     3541 gatgttttga atgcagacat tcattctgtc ttgtgtttga cttagagaag ctgatgctaa
     3601 gtaacgtctg tggcaaatga gaatctgaca aacacggcac ctcctgtgac atctcagagt
     3661 cctgactgaa aaggatcaat gtgaagaagt gtctgtccag cttggggcag aacggtgcat
     3721 gtggaagagg atgtgccttc aagaaggcag cagtaatgtg ggggctggag tggatgatcc
     3781 cttccagccc gtacagttct gtgattctgt aatgcttgct ggtgcagctg gttgtctcct
     3841 ggaagcaacc catttctgga ggagtttgac agctgaagtg accattatca ggcattatcc
     3901 ttcattgaac atggggactt ctgacaccaa accacctcat ggaagctctt actgcgaggc
     3961 agggctgggt aaggactgcg ccagggaagt ggtctaaagt ggtgatttta aaccatacct
     4021 cagggaatta tgacgttact ttattttggg gtatgagtag atcttgttaa tgcatggagg
     4081 agaatggtat tatagcactg tatttggaca caggagatgg tgactactga attagtttcc
     4141 atataaagca gcacattaat ttgccattgt gataccaaac tcatggagag agaaagaggg
     4201 agatactttg aaatagctag caaatttatc cttaaaaagg gatgccaaat gtaaaagtgt
     4261 gaagaatgaa aacgtagggt acattgccaa ctgaatgcat tcttaagtgt gaatcaggtg
     4321 caagaggcct ggaaagcttg aaatcatgac tagagaaggc tcatggtgtg gctgcgttgg
     4381 tgtgccactt aaggctgtgt ttgtcacagt tacaccgtgc tcaccagctg tgagtacgct
     4441 ctccatgttt ctgccagggc tgagctgttg gcgttgaact gcttggtttc tcagtgcatg
     4501 caataatgct ctgtatttga gtaacagtga caactggaag cccaatagaa tactcgtgct
     4561 cttctagcgc cttcattcca aaaggcaaat gagtttcagc tcatcgatag tcacttcgtt
     4621 ctgttcccag agcagtgtgg aagtgggagc ttgttaagga cagttcaacg aagcttagcc
     4681 tagctaagaa cttcatcttt taggtcagct cttcagagag aaggaaatac agcttgtaac
     4741 atttgagagt ctgaatattt gaatcataaa tcactgcttg tttgtttttt tttttagagc
     4801 tcatatgtgc tgtacttagg cctgaaaata attatttctg atcagaaact ctgcttatag
     4861 aaaaagactt ttaggttcag aatgaatttg tgactcttca acaccaccag tggtgttctt
     4921 tggaagccct ttggttgcac tttggtcctc tgcctataca acccgacccg ccattgcctg
     4981 aaggcaggtg gctcccaggg gcccagcagc ctcacactgc agtggggctc ctcttgtgac
     5041 tgagatctca ccatcactgc ttcctcagct tgtagagcta tcattgcctc atgtttgact
     5101 gtcagtgttc tctttggaac gtttgtttgt ttctcttcag acaaatgctg ctactgtctt
     5161 taattctttt attaaaagaa aaaatacatc cgaaatgcaa ttttaa
//

LOCUS       NM_204843               2593 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus RAP1 GTPase activating protein 1 (RAP1GAP1), mRNA.
ACCESSION   NM_204843
VERSION     NM_204843.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2593)
  AUTHORS   Jordan JD, Carey KD, Stork PJ and Iyengar R.
  TITLE     Modulation of rap activity by direct interaction of Galpha(o) with
            Rap1 GTPase-activating protein
  JOURNAL   J. Biol. Chem. 274 (31), 21507-21510 (1999)
   PUBMED   10419452
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000390.1.
            On Dec 24, 2016 this sequence version replaced gi:933123823.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201363,
                              SAMEA2201366 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                AADN04000390.1     662088-662144
            58-151              AADN04000390.1     667485-667578
            152-187             AADN04000390.1     668072-668107
            188-235             AADN04000390.1     670735-670782
            236-274             AADN04000390.1     671444-671482
            275-460             AADN04000390.1     671587-671772
            461-564             AADN04000390.1     682414-682517
            565-643             AADN04000390.1     684441-684519
            644-697             AADN04000390.1     684831-684884
            698-781             AADN04000390.1     684969-685052
            782-882             AADN04000390.1     685308-685408
            883-1012            AADN04000390.1     686679-686808
            1013-1168           AADN04000390.1     687059-687214
            1169-1240           AADN04000390.1     691346-691417
            1241-1327           AADN04000390.1     691614-691700
            1328-1462           AADN04000390.1     692326-692460
            1463-1609           AADN04000390.1     694002-694148
            1610-1713           AADN04000390.1     695372-695475
            1714-1830           AADN04000390.1     697551-697667
            1831-2593           AADN04000390.1     700093-700855
FEATURES             Location/Qualifiers
     source          1..2593
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Red Jungle Fowl"
     gene            1..2593
                     /gene="RAP1GAP1"
                     /gene_synonym="RAP1; RAP1GA1; RAP1GAP"
                     /note="RAP1 GTPase activating protein 1"
                     /db_xref="CGNC:10901"
                     /db_xref="GeneID:395647"
     CDS             170..1840
                     /gene="RAP1GAP1"
                     /gene_synonym="RAP1; RAP1GA1; RAP1GAP"
                     /note="GTPase activating protein Rap1-GAP; GTPase
                     activating protein 1"
                     /codon_start=1
                     /product="RAP1 GTPase activating protein"
                     /protein_id="NP_990174.1"
                     /db_xref="CGNC:10901"
                     /db_xref="GeneID:395647"
                     /translation="MIEKMQGSRLDEQRCSLPAPLKTEEEYIPYPSIHEVLQKGWPYP
                     LIILPQFGGYWIEGTSHNLSSPALSDVPFPWSVKVKLESDPTAKLYRKHFLGKEHQNF
                     YSSDVSLGYLILSVKYEQSEKQENLRLLLRTRTGTKHDLIPISCLNEFPNAVQMAKLL
                     CENVNVERFFPVLYPKASQLIVAFDEHVISNNFKFGVIYQKPGQTTEEEVFSNTEESL
                     GFLEFLDFLGDKIQLQDFRGFRGGLDVIRGQTGTESVYTNFRGKEIMFHVSTKLPFAE
                     GDSQQLQRKRHIGNDIVAIIFQDESTPFVPDMIASNFLHAYVVVQLTHSSSGETLYKV
                     SVTARDDVPFFGPSLPNPAIFRKSTEFREFLLVKLINAEYSCYRAEKFAKLKERTRSA
                     LLESLFEELQLRSRCMMGLPVEEDDKTENGSGGFFENFKRVIRGRSQSLDTMGISMRK
                     QQPATMPSRPTTAGLALSQSVAEGPKAIAASFALPGRSPSRTRTSRFHGRRSSAIGIE
                     NIQEEKSRDIAERIQKVVDSPETLLDLKSDGSSSPSSPEFPSRKSKHI"
ORIGIN      
        1 agctgggttc cccgtctcca tccgcttgcc agctggggat gagagaacct tgctcaggag
       61 gtctgaggag ggagtgtgtt gtgtcagtaa tgttatagat tctcctatcc aaggcattcc
      121 atctgctctt gcttttgctg ctcccaacaa gactgtggac ttgtttgaga tgattgaaaa
      181 aatgcagggg agtcgtctgg atgaacaaag atgttccctt ccagctcctc tcaagacaga
      241 agaagagtat attccttacc ccagcatcca tgaggtatta cagaaggggt ggccatatcc
      301 cctcattatc ttaccccagt ttgggggcta ctggattgaa gggacaagcc acaacctctc
      361 cagtccagct ctgtctgatg taccctttcc ctggagtgtt aaagtgaaac tggagagcga
      421 ccccacagcc aagctatacc gcaagcattt cctagggaag gagcaccaga acttttattc
      481 cagtgatgtg tccttgggct acttgatact ttctgtgaag tatgaacagt ctgagaaaca
      541 ggaaaatcta cgtttgttgc tgaggacacg aactggtacc aaacatgatc tgatccccat
      601 ttcctgtcta aatgagtttc ctaatgctgt ccagatggca aagctactgt gtgaaaatgt
      661 gaatgttgaa cgcttctttc ctgtcctcta tcccaaggct tcacagctta ttgttgcatt
      721 tgatgaacat gtcataagca ataacttcaa atttggggta atctaccaga aacctggaca
      781 gacaactgaa gaggaagtct tcagtaacac ggaagagagt ctgggattcc tggagttctt
      841 ggatttcctt ggtgacaaga ttcagctgca ggatttccgt gggttccggg gaggtttgga
      901 tgtcatcaga ggtcaaacgg gcaccgaatc agtttataca aatttccggg gcaaagaaat
      961 catgtttcat gtatctacaa aactgccctt cgctgaagga gattcccaac agcttcagcg
     1021 gaagcgtcac attgggaatg acattgtagc catcatcttc caggatgaaa gcacaccttt
     1081 tgtgcctgat atgatcgctt ctaatttcct acatgcatat gtggtagttc agctcactca
     1141 cagcagtagt ggggagaccc tctacaaggt ttcagtcaca gcccgagatg atgtgccctt
     1201 ctttggacct tctctaccaa atccagccat atttagaaag agtacagagt ttcgtgaatt
     1261 ccttctggtc aagctcatca atgctgaata cagctgctat agagctgaaa aatttgctaa
     1321 actaaaggag agaacccgaa gtgctctctt ggagagcctt tttgaggagc tgcagcttcg
     1381 cagccgttgt atgatgggac tgcccgtaga agaagatgac aagacagaga atggcagcgg
     1441 gggcttcttt gagaatttca agcgggtgat cagaggccgc agccagagcc tggataccat
     1501 ggggatatcc atgagaaagc agcagccagc caccatgccc agccgcccga cgacagctgg
     1561 ccttgctctg agccagagtg ttgccgaggg ccctaaggcc attgctgcgt cttttgcctt
     1621 gcctggtagg agcccatcac gtactcgaac cagccgtttc catgggcgac ggagtagtgc
     1681 cattggcatt gagaacatac aggaggaaaa gagcagagac attgcagaga ggatacagaa
     1741 ggtggtagac agtccagaaa ctttgcttga cctgaaatct gatggatcat ccagtcccag
     1801 ttccccagag ttccccagca ggaagagcaa acacatctga atggggacat caagccaatc
     1861 aggagtggac cggatgctac taattgctta cctcactgaa gatactggca ggacatttgg
     1921 ggtgaaatga gagtactggc taaaaggaac acgaacttag aggacctcaa ggactgtgga
     1981 aagaccaagt gacaccacat aatgcttcac tggcagtccc tggagcagga atcacggaga
     2041 gggagaagga cagagagatt ctattggagc attttgactc tagggccttc ccattgtcca
     2101 atcagcagtc actgaaccag actctacaaa tgctggggga aaggaggcta ccttgagcat
     2161 ctcttcttct cttcccttac atattcaaaa agagaattaa gtcaaaagca gaacacactt
     2221 ccacctctgt ctctagtaag cactagagat ggattacata gtttaggaag tgcaacgcaa
     2281 agaaagagga tgaagaaatc tgctgaggaa ggatgctgag aacaggatat ttagtggaaa
     2341 tttaggtccc agctcatttt attgattggc tctgacaaga gagaagtatg ttagccttca
     2401 tttccttcaa aatatatttc ctaacttctt gaggaaatat cttcggccta tactggcctt
     2461 gcctttattg tcctctctat tgcatgctgg catgtaatat gcctggggct ttaggtttca
     2521 gtactgcttg taggtcgaga ccggccacgt tttgcagtgt ttctgaagga ataaatatat
     2581 ttaatatatt gaa
//

LOCUS       NM_001347710            1730 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus solute carrier family 2 member 11-like 1 (SLC2A11L1),
            mRNA.
ACCESSION   NM_001347710
VERSION     NM_001347710.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AADN04000193.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                AADN04000193.1     2454708-2454744     c
            38-136              AADN04000193.1     2453259-2453357     c
            137-297             AADN04000193.1     2452126-2452286     c
            298-422             AADN04000193.1     2451462-2451586     c
            423-552             AADN04000193.1     2451106-2451235     c
            553-701             AADN04000193.1     2450715-2450863     c
            702-889             AADN04000193.1     2449978-2450165     c
            890-1000            AADN04000193.1     2449289-2449399     c
            1001-1102           AADN04000193.1     2448895-2448996     c
            1103-1178           AADN04000193.1     2448469-2448544     c
            1179-1306           AADN04000193.1     2448013-2448140     c
            1307-1730           AADN04000193.1     2446851-2447274     c
FEATURES             Location/Qualifiers
     source          1..1730
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="15"
                     /map="15"
                     /breed="Red Jungle Fowl"
     gene            1..1730
                     /gene="SLC2A11L1"
                     /note="solute carrier family 2 member 11-like 1"
                     /db_xref="CGNC:50386"
                     /db_xref="GeneID:416935"
     misc_feature    14..16
                     /gene="SLC2A11L1"
                     /note="upstream in-frame stop codon"
     CDS             32..1513
                     /gene="SLC2A11L1"
                     /note="solute carrier family 2, facilitated glucose
                     transporter member 11-like 1"
                     /codon_start=1
                     /product="solute carrier family 2, facilitated glucose
                     transporter member 11-like"
                     /protein_id="NP_001334639.1"
                     /db_xref="CGNC:50386"
                     /db_xref="GeneID:416935"
                     /translation="MQKMSYNLFLLAFVLGIGGTFQYGLQISIINSPAEYIKSFIRET
                     WLKRYGSSPSEEITTLMWSFIVSIYTIGGLLGSMCVKYMSVTFGRKKSMLLANIPALL
                     SATLMALSRLSGSFEMIIIGRLFAGVCAGLGLNIHIMYVGECAPQKLRGVIAITASTA
                     IAVGKFAGFALGLREVLGVEALWPVLMAANAIPALIQLLTLPFFPDSPRYLLIDKKDK
                     EGCIKAVKQLWGDGDHMAEVDDMIAEQEAIRGEKSKSVCDLVRDKSVRWQFITLFLVS
                     SCMQLIGVNVVYFYAYNVFLKVGLSPSQTRYVSLGVGITEILTTALCGFLVDRAGRKA
                     LLWKSHTAMALALGLLTITLALQDSFSWTPYCSAALIFIFIMSFGLGPAGVLCPLPTE
                     IFIQSYRPAAYAFNGASNWIQLFFLGLLFPFIVEGLGSFCFIIFLAYCLSMAIFVYLV
                     VPETKGKTMLQIMEEFNRLNYRGKKGQEALQQNNCSLTTVTRL"
ORIGIN      
        1 tcagcctgca agctgagatg accacctttg catgcaaaaa atgagctaca atctcttcct
       61 cctggctttt gtcctgggca ttggtggaac tttccagtat gggttgcaga tctccattat
      121 caactctcct gccgagtaca tcaagagttt catacgtgag acctggctga agagatacgg
      181 atcttctccc agtgaagaga taactacttt gatgtggtcc tttattgtgt ccatttacac
      241 cattggtggg ctcctgggct ccatgtgtgt caaatacatg tctgttacat ttggaaggaa
      301 gaagtccatg ctgcttgcca acatccctgc tctgttgagt gcaactctca tggcactcag
      361 tcggctgtct gggtcctttg agatgatcat cattgggaga ttatttgctg gagtgtgtgc
      421 aggtttaggt ctgaatatcc atatcatgta tgtgggggag tgtgccccac agaagctgcg
      481 tggggtgatt gccataactg cttccactgc cattgccgtg ggaaagtttg caggatttgc
      541 tctgggtctc agagaagttc tgggagtaga agctctgtgg cccgttctta tggcagcaaa
      601 tgcaattcct gccctcattc agctgctcac cctccccttc ttcccagact ctccccgcta
      661 cctgctcatt gacaaaaagg acaaggaagg ctgcatcaaa gctgtgaagc agctctgggg
      721 ggatggtgac cacatggccg aagtggatga catgattgca gagcaagaag ccatccgtgg
      781 ggagaaatct aagagtgttt gtgaccttgt tcgtgacaaa tccgtccgtt ggcagttcat
      841 cactctcttt cttgtctcct catgcatgca gttaattgga gtcaatgtgg tttactttta
      901 tgcatacaat gtcttcttaa aagttggact ctccccttcc caaacccgct acgtctccct
      961 gggagttggg atcaccgaga tcctcaccac agctctgtgt ggcttcctgg tggaccgtgc
     1021 tgggaggaag gcactgctat ggaaatccca cactgctatg gccttggcgt taggacttct
     1081 caccatcaca cttgctctac aggattcttt ctcctggaca ccatattgct ctgctgcact
     1141 catttttatc ttcatcatga gcttcggtct tgggccagct ggagtattat gccccctgcc
     1201 cacagaaata tttattcagt catacagacc agctgcttat gcttttaatg gtgcttcaaa
     1261 ctggattcag ctcttctttc ttggactttt gttccctttc attgtggaag gccttggtag
     1321 tttttgtttc atcattttcc tggcatactg tctgtccatg gctatctttg tctacctggt
     1381 agtgccagag actaaaggaa agaccatgtt gcagatcatg gaggagttca accgcctgaa
     1441 ctaccgcgga aagaagggac aggaagccct acagcagaat aactgctcat tgacaactgt
     1501 tactagactt tagtgacaaa ctctccactc catattctgt tattttatta ctgttgtgac
     1561 cagaagcctc actaaacaaa agagattcta ttgctcctag acagtacaaa tgtgtattaa
     1621 aagtagtggc ctgctgtgca ggatgaactt ggtggttccc tccaactgcc gaaatatgaa
     1681 ctgaattaaa tgctcagcac aaaaagaagg aaggaaggaa ggaaggaagg
//

LOCUS       NM_001328355            1672 bp    mRNA    linear   VRT 12-JAN-2017
DEFINITION  Gallus gallus alanyl-tRNA synthetase domain containing 1 (AARSD1),
            mRNA.
ACCESSION   NM_001328355 XM_015299626
VERSION     NM_001328355.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000464.1.
            On Jun 16, 2016 this sequence version replaced gi:971435455.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               AADN04000464.1     140118-140254
            138-260             AADN04000464.1     140338-140460
            261-420             AADN04000464.1     140531-140690
            421-478             AADN04000464.1     141038-141095
            479-635             AADN04000464.1     141448-141604
            636-752             AADN04000464.1     141702-141818
            753-883             AADN04000464.1     142010-142140
            884-950             AADN04000464.1     142305-142371
            951-1042            AADN04000464.1     142536-142627
            1043-1097           AADN04000464.1     143233-143287
            1098-1192           AADN04000464.1     143746-143840
            1193-1672           AADN04000464.1     144002-144481
FEATURES             Location/Qualifiers
     source          1..1672
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="27"
                     /map="27"
                     /breed="Red Jungle Fowl"
     gene            1..1672
                     /gene="AARSD1"
                     /note="alanyl-tRNA synthetase domain containing 1"
                     /db_xref="CGNC:72048"
                     /db_xref="GeneID:107049007"
     CDS             99..1328
                     /gene="AARSD1"
                     /note="alanyl-tRNA editing protein Aarsd1-like"
                     /codon_start=1
                     /product="alanyl-tRNA editing protein Aarsd1"
                     /protein_id="NP_001315284.1"
                     /db_xref="CGNC:72048"
                     /db_xref="GeneID:107049007"
                     /translation="MVFRCQRDSWARQFATRVVSCREAELRPESGGEPMRGFQVVLED
                     TILFPEGGGQPDDRGLIGAVPVLRVTRRGAEAVHFVETALEPGSAVLLSLDWERRFDH
                     MQQHSGQHLITAIAEQMFGFKTTSWELGRQQSVIELDTPSMTTEQMEALEQSVNEKIR
                     ERIPVTVRELAADDPEVETVRSRGLPGDHTGPVRVVDIEGIDSNMCCGTHVSNLSDLQ
                     VIKLICTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKALTSLLKNGPGEHVEAVKRLQ
                     SSVKLLQKNNLNLLRDIAVLIARDFKSKPVQSPLFVLHRKEGDSEFMNIIANEIGKEE
                     TLLFLTVGDEKEAGLFLLAGSVEAVENLGPRVAELLEGKGAGKRGRYQGKATKMSRRG
                     EVQALLQEFISQQTDEA"
ORIGIN      
        1 cgcatccgcc gctctgcagg ccccgcccgc cggtttctcc cgccggccgt ccgctgttcc
       61 tggttcgccg tctctccgca gcacggggtg ccgccgccat ggtgttccgg tgccagcggg
      121 acagctgggc tcggcagttc gccaccaggg tggtgtcgtg tcgggaggcc gagctgcggc
      181 ctgagagcgg tggggaaccg atgcgcggct tccaggtggt gctggaggac acgatcctct
      241 tccccgaggg cggcgggcag cccgatgacc gcggcctcat cggcgccgtc ccggtgctgc
      301 gcgtcacccg gcgcggcgcc gaggccgtgc acttcgtgga gacggcgctg gagccgggca
      361 gcgccgtgct gctgtcgttg gactgggagc gccgcttcga tcacatgcag cagcactcgg
      421 gacagcacct catcactgcc atagcggagc agatgtttgg attcaaaaca acttcatggg
      481 agctgggccg gcaacagagt gtcattgagc tggacacccc ctccatgacc acggagcaaa
      541 tggaggccct ggagcagagt gtgaatgaga agatccggga gaggatacct gtgacagtgc
      601 gggaactggc tgcagatgac cctgaggttg aaacagtgag aagccgcggc ttgccaggtg
      661 accacacggg gccagttcga gttgtagaca ttgaaggcat agactccaac atgtgctgtg
      721 ggactcatgt ctccaacctg agtgacttgc aggttattaa acttatttgc accgagaaag
      781 ggaaaaagaa caaaaccaac ttggttttcc tggcaggaaa tagagtgctg aagtcagttg
      841 aacaaagtca ccgtactgag aaggccctaa cctcactgct gaaaaatgga ccgggtgaac
      901 atgtagaggc tgtgaagaga ttgcagagtt ctgtgaaact tcttcagaag aataatttga
      961 acctgctaag agacattgcg gttttgatag cccgggattt caaaagcaaa cctgttcaaa
     1021 gtccgctgtt tgtcttacac aggaaagagg gtgactctga gtttatgaac atcatcgcta
     1081 atgagattgg gaaagaggaa accctgctgt tcctgactgt gggagatgaa aaggaagcag
     1141 gactctttct tctagctgga tctgttgaag cagttgagaa tttaggtccc agggtggcag
     1201 agctgctgga aggcaaagga gctgggaagc gaggccgcta ccagggcaag gcaaccaaga
     1261 tgagtcgtcg aggagaagtg caagctctgc tccaggaatt catcagtcaa caaacagatg
     1321 aagcgtaaag aaagaatttt gaaagtaggg ctgtcatccc tgctttgtag gatctccact
     1381 aagttctctc ccagagaata aagacaaaaa aagtcccatg taaaatccca tggagttagg
     1441 aaggactcct actcaatgtc tctccagctt gccatttctg ccagcggttc ccaaggctgc
     1501 tacaacttca gctgcagaaa caaaaggggc actgaagagc tgtggtcaaa aagcacctga
     1561 tacgggactg ggtagtgttg ttttttttcc cctcctagaa caggcatggc aggtttagtc
     1621 tggatgttga taataaacag aaaaataaag acagacaaat ctccatccta aa
//

LOCUS       NM_001328354             747 bp    mRNA    linear   VRT 12-JAN-2017
DEFINITION  Gallus gallus prostaglandin E synthase 3 (cytosolic)-like
            (PTGES3L), mRNA.
ACCESSION   NM_001328354 XM_015299630
VERSION     NM_001328354.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000464.1.
            On Jun 16, 2016 this sequence version replaced gi:971435462.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201358
                              [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-94                AADN04000464.1     137996-138089
            95-208              AADN04000464.1     138453-138566
            209-275             AADN04000464.1     138674-138740
            276-374             AADN04000464.1     138937-139035
            375-464             AADN04000464.1     139379-139468
            465-518             AADN04000464.1     139557-139610
            519-747             AADN04000464.1     139788-140016
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="27"
                     /map="27"
                     /breed="Red Jungle Fowl"
     gene            1..747
                     /gene="PTGES3L"
                     /gene_synonym="PTGES3L-AARSD1"
                     /note="prostaglandin E synthase 3 (cytosolic)-like"
                     /db_xref="CGNC:2079"
                     /db_xref="GeneID:420013"
     CDS             87..530
                     /gene="PTGES3L"
                     /gene_synonym="PTGES3L-AARSD1"
                     /note="PTGES3L-AARSD1 readthrough"
                     /codon_start=1
                     /product="putative protein PTGES3L"
                     /protein_id="NP_001315283.1"
                     /db_xref="CGNC:2079"
                     /db_xref="GeneID:420013"
                     /translation="MARQHAKTLWYDRPRYVFLEFCVEDSTDVQVVIEDHRLVFSCKN
                     ADGVEFYNEINLYARVNSKDSREKRSDRSITCFMRKWKEKVAWPRITKENIKPAWLSV
                     DFDNWRDWEGDEEVERAMVEEYAELLQKVTDKAPPPTMDDLDDDL"
ORIGIN      
        1 ccttgaggct gggagggagc gggaggagaa gcgcccggcc ccgttcccga cggtccgaag
       61 tagtgcggcg cggggccggc acggacatgg cgaggcaaca cgcaaagaca ctgtggtatg
      121 accgcccacg gtatgttttc ctggagttct gcgtggagga cagcacagat gttcaggttg
      181 tcattgagga ccaccgattg gtgttcagct gcaaaaacgc agatggagta gaattctaca
      241 atgagatcaa cctgtatgcc agggtgaact ccaaggactc acgagagaaa cgttctgacc
      301 gctccatcac atgctttatg aggaagtgga aggagaaagt ggcctggccc cgcatcacca
      361 aggagaacat caagccagcc tggctctccg ttgactttga caactggcga gactgggaag
      421 gggatgagga ggtggagagg gccatggtgg aggagtacgc agagctcctg cagaaggtga
      481 cggacaaggc cccccccccg accatggatg acctggatga cgacctctga agcccagctc
      541 ctcatagaca gcgcggctcc tcaaagccct ccccgtgcgc cagcagcgca cagcaacgag
      601 ccgggacacg ggcgaggaaa gcggagcccc gaggaacgac gccggtttgc ggcagagtgc
      661 ggcggacccc aaagcacggc ggcgagagct gcacgctctt ccagtgccga ttacgcgcgg
      721 ggcaataaac gcgaaccgct gccgcga
//

LOCUS       NM_001278102            1362 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus adipogenesis associated, Mth938 domain containing
            (AAMDC), transcript variant 2, mRNA.
ACCESSION   NM_001278102
VERSION     NM_001278102.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX930541.1, BU315144.1 and AADN04000352.1.
            On Feb 11, 2016 this sequence version replaced gi:493796791.
            
            Transcript Variant: This variant (2) lacks an alternate exon in the
            5' UTR compared to variant 1. All three variants encode the same
            protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains to make the sequence
            consistent with the reference genome assembly. The genomic
            coordinates used for the transcript record were based on transcript
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU315144.1, BM488034.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201376 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                BX930541.1         1-50
            51-713              BU315144.1         1-663
            714-1362            AADN04000352.1     548393-549041       c
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..1362
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="adipogenesis associated, Mth938 domain containing"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
     misc_feature    117..119
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="upstream in-frame stop codon"
     CDS             156..524
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="UPF0366 protein C11orf67; adipogenesis associated
                     Mth938 domain-containing protein"
                     /codon_start=1
                     /product="mth938 domain-containing protein"
                     /protein_id="NP_001265031.1"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
                     /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
                     HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
                     EYNALAAQGVKVGGVFHSTC"
ORIGIN      
        1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
       61 gggtcgcgcg gttcagaagg tcgttacctt cgagacgcag ctgctggcag ccacactgat
      121 caaaagcatt tccaagactt tggttcaact cagtgatgtc ttcccctgaa attgcttccc
      181 tgtcttgggg acagatgaag gtgaaaggct gctctacaac atacaaggac tgcaaagtat
      241 ggccaggagg aagtcggacc tgggattgga gagaaactgg gactaatcat tctccaggag
      301 tgcagccggc tgaccttgaa gaagttgtca agaagggtgt taaaactctc gtgattggcc
      361 gtggcatgag tgaggctctg caggttcctc catctaccgt ggactatctc aagaaaaatg
      421 ggattgatgt gttggtgttg cagacagaga aggcagtggc agagtacaat gccctggctg
      481 ctcagggtgt caaagtgggg ggagtcttcc actcaacgtg ctgaagcact gctgctttgc
      541 agcctgccct gacctcagcc aagtgctggg catgccttgg ctgcatcaaa ttacacccag
      601 cacagtgggg aggtgcgtgc caatgcatta atgtgcgctg caaagctgaa atgcaagggc
      661 agtttatgag ttcagggttt aaacagagtg ctgttaatga aatcttttaa ctgcagaaca
      721 gtttgcatac gttcttggga ttgacctaat cttcctctga agactgtctg cattctggtt
      781 acttttaggc taaattaatg aactctggtt aatttttggc taaattaaga ctcttaagtt
      841 gtgaatgctt tgattagaaa atggtgcgga attacattaa tagttactgt attgtagcca
      901 gaaaacatat gatgacgaca gtcaagtggt aggtatgaag tagtggtaaa ggatcacttt
      961 attaatgagt ttagaaaaaa gacaaaacac aaggcagccc ctgagcaaca gctctgcctc
     1021 ctgctggtga actcactcag tgcataactt gacacttctt tacgccagac atagaaaaag
     1081 ctgtctatgg ggaatgaaca gaatctgtgc cttaaagatt tttatcaatt gaaatgtgag
     1141 tgttgagttg tggaatatgt atctatgtga aagtccctac ctacttaaaa tgatcaggaa
     1201 gatctgccac agaattgctt gtaggaaatc agtctaagtt gctgctagca agcttgggga
     1261 tggaggtaga attcttaccc agcagaagct gctggtttaa acattatgac aagtgtgttg
     1321 ttacatcaaa aaaattaaaa gttcttttag ttgttgttct cc
//

LOCUS       NM_001278100            1526 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus adipogenesis associated, Mth938 domain containing
            (AAMDC), transcript variant 1, mRNA.
ACCESSION   NM_001278100 XM_003640599 XM_003640600 XM_424622
VERSION     NM_001278100.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX930541.1, BU315144.1 and AADN04000352.1.
            On Feb 11, 2016 this sequence version replaced gi:493796415.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains to make the sequence
            consistent with the reference genome assembly. The genomic
            coordinates used for the transcript record were based on transcript
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX930541.1, BU304087.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201376 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-267               BX930541.1         1-267
            268-877             BU315144.1         54-663
            878-1526            AADN04000352.1     548393-549041       c
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..1526
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="adipogenesis associated, Mth938 domain containing"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
     misc_feature    281..283
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="upstream in-frame stop codon"
     CDS             320..688
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="UPF0366 protein C11orf67; adipogenesis associated
                     Mth938 domain-containing protein"
                     /codon_start=1
                     /product="mth938 domain-containing protein"
                     /protein_id="NP_001265029.1"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
                     /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
                     HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
                     EYNALAAQGVKVGGVFHSTC"
ORIGIN      
        1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
       61 gggtcgcgcg gggcgctgag atggatgtca cgtcgtgctg ctgtctcttg tagtgtgtgc
      121 agcataggaa gacaatccaa agacttctct ttgctgaggg ctcttccttt aatgggtgcc
      181 accggggttc tgagagtctg gatgtcttga aggatctgct gctgagggtt tctggttcag
      241 aaggtcgtta ccttcgagac gcagctgctg gcagccacac tgatcaaaag catttccaag
      301 actttggttc aactcagtga tgtcttcccc tgaaattgct tccctgtctt ggggacagat
      361 gaaggtgaaa ggctgctcta caacatacaa ggactgcaaa gtatggccag gaggaagtcg
      421 gacctgggat tggagagaaa ctgggactaa tcattctcca ggagtgcagc cggctgacct
      481 tgaagaagtt gtcaagaagg gtgttaaaac tctcgtgatt ggccgtggca tgagtgaggc
      541 tctgcaggtt cctccatcta ccgtggacta tctcaagaaa aatgggattg atgtgttggt
      601 gttgcagaca gagaaggcag tggcagagta caatgccctg gctgctcagg gtgtcaaagt
      661 ggggggagtc ttccactcaa cgtgctgaag cactgctgct ttgcagcctg ccctgacctc
      721 agccaagtgc tgggcatgcc ttggctgcat caaattacac ccagcacagt ggggaggtgc
      781 gtgccaatgc attaatgtgc gctgcaaagc tgaaatgcaa gggcagttta tgagttcagg
      841 gtttaaacag agtgctgtta atgaaatctt ttaactgcag aacagtttgc atacgttctt
      901 gggattgacc taatcttcct ctgaagactg tctgcattct ggttactttt aggctaaatt
      961 aatgaactct ggttaatttt tggctaaatt aagactctta agttgtgaat gctttgatta
     1021 gaaaatggtg cggaattaca ttaatagtta ctgtattgta gccagaaaac atatgatgac
     1081 gacagtcaag tggtaggtat gaagtagtgg taaaggatca ctttattaat gagtttagaa
     1141 aaaagacaaa acacaaggca gcccctgagc aacagctctg cctcctgctg gtgaactcac
     1201 tcagtgcata acttgacact tctttacgcc agacatagaa aaagctgtct atggggaatg
     1261 aacagaatct gtgccttaaa gatttttatc aattgaaatg tgagtgttga gttgtggaat
     1321 atgtatctat gtgaaagtcc ctacctactt aaaatgatca ggaagatctg ccacagaatt
     1381 gcttgtagga aatcagtcta agttgctgct agcaagcttg gggatggagg tagaattctt
     1441 acccagcaga agctgctggt ttaaacatta tgacaagtgt gttgttacat caaaaaaatt
     1501 aaaagttctt ttagttgttg ttctcc
//

LOCUS       NM_001278104            1297 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus adipogenesis associated, Mth938 domain containing
            (AAMDC), transcript variant 3, mRNA.
ACCESSION   NM_001278104
VERSION     NM_001278104.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX930541.1, BU296789.1 and AADN04000352.1.
            On Feb 11, 2016 this sequence version replaced gi:493797437.
            
            Transcript Variant: This variant (3) lacks two alternate 5' UTR
            exons compared to variant 1. All three variants encode the same
            protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains to make the sequence
            consistent with the reference genome assembly. The genomic
            coordinates used for the transcript record were based on transcript
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX930513.1, BU296789.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201358, SAMEA2201376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                BX930541.1         1-28
            29-694              BU296789.1         1-666
            695-1297            AADN04000352.1     548393-548995       c
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..1297
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="adipogenesis associated, Mth938 domain containing"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
     CDS             91..459
                     /gene="AAMDC"
                     /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
                     /note="UPF0366 protein C11orf67; adipogenesis associated
                     Mth938 domain-containing protein"
                     /codon_start=1
                     /product="mth938 domain-containing protein"
                     /protein_id="NP_001265033.1"
                     /db_xref="CGNC:52510"
                     /db_xref="GeneID:425610"
                     /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
                     HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
                     EYNALAAQGVKVGGVFHSTC"
ORIGIN      
        1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
       61 gggtcgcgcg gactttggtt caactcagtg atgtcttccc ctgaaattgc ttccctgtct
      121 tggggacaga tgaaggtgaa aggctgctct acaacataca aggactgcaa agtatggcca
      181 ggaggaagtc ggacctggga ttggagagaa actgggacta atcattctcc aggagtgcag
      241 ccggctgacc ttgaagaagt tgtcaagaag ggtgttaaaa ctctcgtgat tggccgtggc
      301 atgagtgagg ctctgcaggt tcctccatct accgtggact atctcaagaa aaatgggatt
      361 gatgtgttgg tgttgcagac agagaaggca gtggcagagt acaatgccct ggctgctcag
      421 ggtgtcaaag tggggggagt cttccactca acgtgctgaa gcactgctgc tttgcagcct
      481 gccctgacct cagccaagtg ctgggcatgc cttggctgca tcaaattaca cccagcacag
      541 tggggaggtg cgtgccaatg cattaatgtg cgctgcaaag ctgaaatgca agggcagttt
      601 atgagttcag ggtttaaaca gagtgctgtt aatgaaatct tttaactgca gaacagtttg
      661 catacgttct tgggattgac ctaatcttcc tctgaagact gtctgcattc tggttacttt
      721 taggctaaat taatgaactc tggttaattt ttggctaaat taagactctt aagttgtgaa
      781 tgctttgatt agaaaatggt gcggaattac attaatagtt actgtattgt agccagaaaa
      841 catatgatga cgacagtcaa gtggtaggta tgaagtagtg gtaaaggatc actttattaa
      901 tgagtttaga aaaaagacaa aacacaaggc agcccctgag caacagctct gcctcctgct
      961 ggtgaactca ctcagtgcat aacttgacac ttctttacgc cagacataga aaaagctgtc
     1021 tatggggaat gaacagaatc tgtgccttaa agatttttat caattgaaat gtgagtgttg
     1081 agttgtggaa tatgtatcta tgtgaaagtc cctacctact taaaatgatc aggaagatct
     1141 gccacagaat tgcttgtagg aaatcagtct aagttgctgc tagcaagctt ggggatggag
     1201 gtagaattct tacccagcag aagctgctgg tttaaacatt atgacaagtg tgttgttaca
     1261 tcaaaaaaat taaaagttct tttagttgtt gttctcc
//

LOCUS       NM_001006176            3248 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus coronin 7 (CORO7), mRNA.
ACCESSION   NM_001006176 XM_414966
VERSION     NM_001006176.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3248)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BM426249.1 and AJ719722.1.
            On Mar 21, 2015 this sequence version replaced gi:57525130.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ719722.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-312               BM426249.1         1-312
            313-3248            AJ719722.1         10-2945
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /map="14"
                     /breed="Commercial broiler, Ottawa Research Centre,
                     leghorn"
     gene            1..3248
                     /gene="CORO7"
                     /gene_synonym="CORO7-PAM16; coronin-7"
                     /note="coronin 7"
                     /db_xref="CGNC:50317"
                     /db_xref="GeneID:416670"
     misc_feature    308..310
                     /gene="CORO7"
                     /gene_synonym="CORO7-PAM16; coronin-7"
                     /note="upstream in-frame stop codon"
     CDS             347..3118
                     /gene="CORO7"
                     /gene_synonym="CORO7-PAM16; coronin-7"
                     /note="CORO7-PAM16 readthrough"
                     /codon_start=1
                     /product="coronin-7"
                     /protein_id="NP_001006176.1"
                     /db_xref="CGNC:50317"
                     /db_xref="GeneID:416670"
                     /translation="MNRFKASKFRHTEARLPRREAWIGGLRASSVASYGNHVEASCRW
                     VASSAEATGVLGIVPLEGRDGGKRTVSQLCCHSDAVTDFDFSPFDPFLLATGSADEMV
                     KVWRLPEEGQELPSSAGLMLGPGGGTVDMLQFHPTADGILTSGVGKRVTVWDVGQQQP
                     LTALEAHGDQLQSLSWKHDGRLLGTSCKDKKLRILDPRASPAASQSVPGHENNKDSRL
                     LWMGASDCLISVGFSQMREREVKLWDTRKFSGATFTLALDTSSGAVIPLYDADTGLLV
                     LAGKGENLLYCLEAAPAQPALTQVTQCLMEGPTRGLATVPRLALDVMACEVLRVLQLT
                     DTFLVPVSYIVPRKSNQEFHEDLFPDCAGMLPATDAQAWWAGDSQQVGRVSLHPARRP
                     TETFCSPLITAAPSTQLPDDGPVDSDRSEGSGYSSPSGSLTSPSSAGASLSTSTGPSS
                     GFVSSPSQKSLQSILGPSSRFRHTQGTVLHRDSHITNLRGLSLTTPGESDGFCANHQR
                     VALPLLSAGGQIAVLELSKPGRLPDVAVPTIQNGAAVSDLSWDPFDPQRLAVAGEDAK
                     IRLWRVPEGGLQDTLQEPEAVLRGHTEKIYSIRFHPVAADLLVSSSYDMTVRIWDLGA
                     GREVLCLQGHTDQIFSLAWSPDGRKLATVSKDGRLRLFEPRCSLQPQQEGPGPEGGRG
                     ARVVWVCGGDFLLVSGFDSRSERRILLYRAQALSDGPLYVLGLDVAPSTLLPFYDEDT
                     SVVFLTGKGDTRVFLYEVTPEPPYFLECNSFTSSDPHKGFVFLRKTACDVREVEFARA
                     LRLGQSSLEPVAFRVPRVKKEYFQEDIFPPTRVWWEPALSASAWLGGADGQQNRAELR
                     PADMVPVSQAPKEAPARKFVPAAVYLGEKTDEQKKEELLSAMVARLGNRHDPLPQDSF
                     EGVDEAEWD"
ORIGIN      
        1 gatccgggct gctccgcccg cgcggcgacg gcgacgggga cggcccgtgg gcgacacggc
       61 ggggcgcggg gctcttcgcc cgcttccctg acagctgcgg ttgtgctcgc tgccgggggc
      121 ggaccggcag cctcctgacg tcccgccgtg ttgtgcgtgg agcagctgct gccaggcgcc
      181 gagggcggcc ggctcagcga gggcggacag ctgccggcct gcagagcccc caacccgcgc
      241 ggcgcagagc ggcccggccg cgccctgccc tgccctggcc gtgccgcggg gcggggcggg
      301 gcggggctga gggcggcgcg gcgcggcgcg gcggtcccgg cgcaccatga accgcttcaa
      361 ggcgtccaag ttccggcaca ccgaggcccg gctgccccgc agggaggcct ggattggggg
      421 tctccgagcc agctctgttg catcctatgg gaaccatgtg gaggccagct gccgctgggt
      481 cgcctccagt gctgaggcaa caggagtgct gggcatcgtg ccactggagg gcagggacgg
      541 aggcaagagg accgtgtctc agctctgctg ccactcagat gcagtgacag actttgactt
      601 ctcacccttt gacccattcc tgctggccac aggctccgct gatgaaatgg tgaaggtttg
      661 gcgcctgcct gaggaaggcc aggagctgcc cagcagtgca gggctgatgt tgggtcctgg
      721 tgggggcaca gtggacatgc tgcagtttca cccaacggca gatggcatcc tgaccagtgg
      781 tgtgggaaag cgggtcactg tgtgggatgt ggggcagcag cagccgctga cagcactgga
      841 ggcccatggg gaccagctgc agagcctatc ctggaagcat gatggccgcc tgcttggcac
      901 ctcctgcaag gacaagaaac tgcggatcct tgaccctcga gccagcccag ctgcatccca
      961 gagtgtccca ggacatgaga acaacaagga ctcccggctg ctctggatgg gagccagcga
     1021 ttgcctcatc tccgtggggt tcagccagat gcgtgagcgg gaggtgaagc tctgggacac
     1081 gcggaaattc agtggcgcga ctttcacctt ggcactggac acctcatctg gggccgtgat
     1141 cccactgtat gacgccgaca cggggctgct ggtgctggcg gggaagggag aaaacctcct
     1201 gtactgcttg gaggcggcac cggctcagcc tgcactcacc caagtcactc agtgcctgat
     1261 ggagggaccc acacggggcc tggccaccgt cccccgcctg gccctggacg tcatggcctg
     1321 cgaggtgctc cgcgtcctgc agctcaccga caccttcctc gtccctgtca gctacatcgt
     1381 gccccgcaag tccaaccagg agttccacga ggatctgttc cctgactgcg ctgggatgct
     1441 gccggccaca gatgcccagg cctggtgggc aggggacagc cagcaggtgg ggagggtgag
     1501 cctgcacccg gcacggagac ccacagagac cttctgttcc ccactcatca ccgccgcacc
     1561 cagcacccag ctgcctgatg acggccccgt ggattccgac cgcagtgaag gcagtggcta
     1621 ctcttcaccc tctggctcgc tgacctcacc gagcagcgct ggcgcctcac tctccaccag
     1681 cactggcccc tccagtggct tcgtcagcag ccccagccag aagtcactgc agagtatttt
     1741 ggggcccagc tcccgcttcc ggcacacaca gggcacagtg ctgcaccgtg acagccacat
     1801 aaccaacctg cgggggctga gcctcaccac gccgggcgag agcgacggct tctgtgccaa
     1861 ccaccagcgt gttgccctcc cactgctctc tgccggtggc cagatcgctg tccttgagct
     1921 ctccaaacca ggccgtctcc ccgacgtggc tgtgcccacc atccagaatg gtgcagcggt
     1981 gtccgacctc tcctgggacc ccttcgaccc acagcgcctt gcggttgcgg gggaggatgc
     2041 caagatccgg ctgtggcggg tgcctgaggg ggggctgcag gacacgctgc aggagcctga
     2101 ggccgtgctg agagggcaca cggagaagat ctactccatc cgcttccacc ccgtggcagc
     2161 cgacctcctt gtctcctctt cctatgacat gacagtgcgg atttgggatc tgggtgctgg
     2221 gcgggaggtg ctgtgcctac agggacacac ggaccagatc ttcagcctgg cctggagccc
     2281 agacgggagg aagctggcga cggtgagcaa ggatggccgg ttgcggctct ttgagcctcg
     2341 gtgcagcctt caaccccagc aggagggtcc gggccctgag ggaggccgtg gggcacgcgt
     2401 ggtctgggtg tgcggaggtg acttcctcct cgtgtccggc ttcgacagcc gcagcgagag
     2461 gaggatcctt ctgtaccgtg cacaggccct gtccgatggg cccctctacg ttctcggcct
     2521 cgatgtggcc ccttccacac tcctgccctt ctatgatgag gacaccagtg ttgtcttcct
     2581 cactggcaag ggtgacacca gagtcttcct ctacgaggtg acccccgagc caccctattt
     2641 cctcgaatgc aacagcttca cctccagcga cccccacaag ggctttgtct tcctgcgcaa
     2701 gacagcgtgc gacgtgcggg aggtggagtt cgcccgggcg ctgcggctgg ggcagagcag
     2761 cctcgagccg gtggctttcc gtgtgccgcg tgtcaagaaa gagtatttcc aagaagacat
     2821 cttccctccc acccgcgtgt ggtgggagcc ggccctgagc gccagcgcct ggctgggggg
     2881 ggcggacggg cagcagaacc gcgctgagct ccgtcccgcc gacatggtgc cagtgagcca
     2941 ggccccaaag gaggcacctg cgcggaagtt cgtccctgcg gccgtgtatc tgggggagaa
     3001 gacagacgag cagaagaagg aggagctcct cagcgccatg gtggcccggc tggggaaccg
     3061 ccacgacccg ctgccgcagg actccttcga aggcgtggat gaggccgagt gggactaggc
     3121 cgcgggcgga ccccacggcg ctgcgcggac cccaggcctc gccggagagg agccgtctcg
     3181 aacccggccc gcgccagggg ccaggccccg ccattaaagc cgctgcagcc ccaaaaaaaa
     3241 aaaaaaaa
//

LOCUS       NM_001281486             572 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus small integral membrane protein 7 (SMIM7), mRNA.
ACCESSION   NM_001281486 XM_418258
VERSION     NM_001281486.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
            Korn B and Buerstedde JM.
  TITLE     A large database of chicken bursal ESTs as a resource for the
            analysis of vertebrate gene function
  JOURNAL   Genome Res. 10 (12), 2062-2069 (2000)
   PUBMED   11116100
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU332068.1, CR389276.1, CR352906.1, AJ392482.1 and BU317186.1.
            On Jul 31, 2013 this sequence version replaced gi:513227766.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU332068.1, AM065877.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                BU332068.1         1-27
            28-361              CR389276.1         1-334
            362-413             CR352906.1         450-501
            414-436             AJ392482.1         197-219
            437-479             CR389276.1         410-452
            480-536             AJ392482.1         263-319
            537-572             BU317186.1         508-543
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="28"
                     /map="28"
                     /breed="Leghorn"
     gene            1..572
                     /gene="SMIM7"
                     /gene_synonym="C19orf42; C28H19ORF42"
                     /note="small integral membrane protein 7"
                     /db_xref="CGNC:51190"
                     /db_xref="GeneID:420141"
     CDS             21..248
                     /gene="SMIM7"
                     /gene_synonym="C19orf42; C28H19ORF42"
                     /note="UPF0608 protein C19orf42"
                     /codon_start=1
                     /product="small integral membrane protein 7"
                     /protein_id="NP_001268415.1"
                     /db_xref="CGNC:51190"
                     /db_xref="GeneID:420141"
                     /translation="MLGDLLLCGTLLVNAGAVLNFRLRRRDTEGFGEGAREPTTGDNI
                     REFLLSLRYFRIFIALWNVFMMFCMIVLFGS"
ORIGIN      
        1 ccggcgccgg gaccgccgcc atgctggggg atctgctgct ctgcggaacg ctgctggtga
       61 acgccggcgc tgtgctgaac ttcagactga ggaggagaga cacggagggc ttcggcgagg
      121 gggcgaggga gcccaccacc ggtgacaata tcagagagtt cttgctgagc cttaggtatt
      181 tccgaatctt cattgccttg tggaatgtct tcatgatgtt ctgcatgatt gtgttatttg
      241 gatcttgaaa gtcatccaca aacatggctg gtaacttgga agagactttt ggctgcaaac
      301 ataacttttc tatcaagtaa aagattataa tgctttccaa acacagccct gggattgtga
      361 cagttcttca gcacgagctc cgaggggcag cacagcacac agccccccca gccagctgtg
      421 taaggctgtg ggtgtgtggg gctgcgtgct gcagggcagg gagccttcca gcccctgagc
      481 caaaggcctc aaagtaaaat taattcaact tcaccgggag gaaaaaaaca acccacccac
      541 ctttacagtg ggttgctcag cattctgtgc cc
//

LOCUS       NM_001278545             940 bp    mRNA    linear   VRT 09-JAN-2017
DEFINITION  Gallus gallus immunoglobulin lambda-like polypeptide 1 (IGLL1),
            mRNA.
ACCESSION   NM_001278545
VERSION     NM_001278545.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Luo J, Zhang H, Teng M, Fan JM, You LM, Xiao ZJ, Yi ML, Zhi YB, Li
            XW and Zhang GP.
  TITLE     Surface IgM on DT40 cells may be a component of the putative
            receptor complex responsible for the binding of infectious bursal
            disease virus
  JOURNAL   Avian Pathol. 39 (5), 359-365 (2010)
   PUBMED   20954012
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Yamanaka HI, Inoue T and Ikeda-Tanaka O.
  TITLE     Chicken monoclonal antibody isolated by a phage display system
  JOURNAL   J. Immunol. 157 (3), 1156-1162 (1996)
   PUBMED   8757621
REFERENCE   3  (bases 1 to 940)
  AUTHORS   Mansikka A, Sandberg M, Lassila O and Toivanen P.
  TITLE     Rearrangement of immunoglobulin light chain genes in the chicken
            occurs prior to colonization of the embryonic bursa of Fabricius
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 87 (23), 9416-9420 (1990)
   PUBMED   2123557
REFERENCE   4  (bases 1 to 940)
  AUTHORS   Parvari,R., Ziv,E., Lantner,F., Tel-Or,S., Burstein,Y. and
            Schechter,I.
  TITLE     A few germline genes encode the variable regions of chicken
            immunoglobulin light and gamma-heavy chains
  JOURNAL   Prog. Clin. Biol. Res. 238, 15-26 (1987)
   PUBMED   3110791
REFERENCE   5  (bases 1 to 940)
  AUTHORS   Reynaud,C.A., Anquez,V., Dahan,A. and Weill,J.C.
  TITLE     A single rearrangement event generates most of the chicken
            immunoglobulin light chain diversity
  JOURNAL   Cell 40 (2), 283-291 (1985)
   PUBMED   3917859
REFERENCE   6  (bases 1 to 940)
  AUTHORS   Reynaud,C.A., Dahan,A. and Weill,J.C.
  TITLE     Complete sequence of a chicken lambda light chain immunoglobulin
            derived from the nucleotide sequence of its mRNA
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 80 (13), 4099-4103 (1983)
   PUBMED   6408641
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC171016.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN03376185,
                              SAMN03376188 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                AC171016.2         125417-125503       c
            88-372              AC171016.2         125007-125291       c
            373-414             AC171016.2         123150-123191       c
            415-940             AC171016.2         120886-121411       c
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="15"
                     /map="15"
                     /breed="Red Jungle Fowl"
     gene            1..940
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /note="immunoglobulin lambda-like polypeptide 1"
                     /db_xref="CGNC:14448"
                     /db_xref="GeneID:416928"
     CDS             42..728
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /note="Ig light chain variable region; Ig lambda chain V-1
                     region; immunoglobulin light-chain VJ region;
                     immunoglobulin lambda light chain; immunoglobulin
                     light-chain C-lambda region; immunoglobulin lambda chain;
                     Ig VL1; immunoglobulin light chain; sIgM light chain;
                     immunoglobulin Y light chain; Ig lambda chain C region;
                     immunoglobulin light chain variable region"
                     /codon_start=1
                     /product="Ig lambda chain V-1 region precursor"
                     /protein_id="NP_001265474.1"
                     /db_xref="CGNC:14448"
                     /db_xref="GeneID:416928"
                     /translation="MAWAPLLLAVLAHTSGSLVQAALTQPSSVSANPGETVKITCSGD
                     RSYYGWYQQKAPGSAPVTLIYDNTNRPSNIPSRFSGSKSGSTATLTITGVQADDEAVY
                     YCGSADSSMCGIFGAGTTLTVLGQPKVAPTITLFPPSKEELNEATKATLVCLINDFYP
                     SPVTVDWVIDGSTRSGETTAPQRQSNSQYMASSYLSLSASDWSSHETYTCRVTHNGTS
                     ITKTLKRSEC"
     sig_peptide     42..104
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    105..164
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
                     Region: Framework-1"
     misc_feature    165..188
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
                     Region: Complementarity-determining-1"
     misc_feature    189..236
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
                     Region: Framework-2"
     misc_feature    237..257
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
                     Region: Complementarity-determining-2"
     misc_feature    258..353
                     /gene="IGLL1"
                     /gene_synonym="IgL; IGLV"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
                     Region: Framework-3"
ORIGIN      
        1 gccccatcgg cgtggggaca cacagctgct gggattccgc catggcctgg gctcctctcc
       61 tcctggcggt gctcgcccac acctcaggtt ccctggtgca ggcagcgctg actcagccgt
      121 cctcggtgtc agcgaacccg ggagaaaccg tcaagatcac ctgctccggg gataggagct
      181 actatggctg gtaccagcag aaggcacctg gcagtgcccc tgtcactctg atctatgaca
      241 acaccaacag accctcgaac atcccttcac gattctccgg ttccaaatcc ggctccacag
      301 ccacattaac catcactggg gtccaagccg acgacgaggc tgtctattac tgtgggagtg
      361 cagacagcag catgtgtggt atatttgggg ccgggacaac cctgaccgtc ctaggccagc
      421 ccaaggtggc ccccaccatc accctcttcc caccgtcaaa ggaggagctg aacgaagcca
      481 ccaaggccac cctggtgtgc ctgataaacg acttctaccc cagcccagtg actgtggatt
      541 gggtgatcga tggctccacc cgctctggcg agaccacagc accacagcgg cagagcaaca
      601 gccagtatat ggccagcagc tacctgtcac tgtctgccag cgactggtca agccacgaga
      661 cctacacctg cagggtcaca cacaacggca cctctatcac gaagaccctg aagaggtccg
      721 agtgctaata gtcccactgg ggatgcaatg tgaggacagt ggttcctcac cctccctgtc
      781 cctctgggcc gctgctggtg gcagcagccc tcacttccca ctcagatgtc ccccaccgtg
      841 cccccatcac ccacctctgc ctgtcgactc ctcttgccct catctctcca ggtgtcacat
      901 taataaacac gacactgaac tagtgctgac tctgcatcca
//

LOCUS       NM_001277657            1691 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus calcium channel flower domain containing 1 (CACFD1),
            mRNA.
ACCESSION   NM_001277657 XM_415434
VERSION     NM_001277657.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR385838.1.
            On Apr 13, 2013 this sequence version replaced gi:363740460.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR385838.1, BU455956.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1691              CR385838.1         2-1692
FEATURES             Location/Qualifiers
     source          1..1691
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="17"
                     /map="17"
     gene            1..1691
                     /gene="CACFD1"
                     /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
                     /note="calcium channel flower domain containing 1"
                     /db_xref="CGNC:50452"
                     /db_xref="GeneID:417151"
     misc_feature    226..228
                     /gene="CACFD1"
                     /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
                     /note="upstream in-frame stop codon"
     CDS             250..774
                     /gene="CACFD1"
                     /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
                     /note="calcium channel flower domain-containing protein 1"
                     /codon_start=1
                     /product="calcium channel flower homolog"
                     /protein_id="NP_001264586.1"
                     /db_xref="CGNC:50452"
                     /db_xref="GeneID:417151"
                     /translation="MSSQDEQFQAAAPESASSSADDGMTWWYRWLCRIAGVIGGVSCA
                     VAGLWNCVTINPLNIAAGVWMMLNAFVLFLCEAPFCCQFIEFANAVSARADKLRAWQK
                     AAFYCGMAVFPVMLSLTLTTLFGNAIAFATGVLYGLSALGKKGDAISYARIHQQQKQM
                     DEEKLTGCLEGQAL"
ORIGIN      
        1 gacgtggagg ctgctcccac ggccgctggc atcgctgctg cggtcagaaa ccctctattg
       61 tcagccctgg ggggcccggc cccgtatggg ggtgcgagga gaggcccagc agcagcaggg
      121 ccgggttagg ggccgtctcc tggtcctgct ggaggagggg ggagtgtcac ctggaggggc
      181 atccagcgct gctggggctc aggtggggag cggggagctg ccctttgacc ccccagcagc
      241 agcggggcca tgagctctca ggatgagcag ttccaagcag cagcccccga gtcagcatct
      301 tcctccgccg atgatggcat gacctggtgg tacaggtggc tctgcaggat tgccggggtc
      361 atcgggggcg tgtcttgcgc tgttgctggt ctctggaact gtgttaccat caacccactg
      421 aacatagcag ccggagtgtg gatgatgctc aacgccttcg tcctgttcct gtgcgaggct
      481 ccgttctgct gccagttcat cgagttcgcc aacgccgtgt ctgcgagggc agacaagctg
      541 cgggcctggc agaaagctgc tttctactgc gggatggctg tgttccctgt catgctcagc
      601 ctgacgctca ccactctctt tggaaatgcc attgcgtttg cgaccggggt gctgtatggc
      661 ctgtcagctc ttggcaagaa gggagatgcc atttcctacg ctcggatcca ccagcagcag
      721 aagcaaatgg atgaagagaa gctcacgggg tgcctggagg gacaggctct gtgaagtgcg
      781 tgagcccagg gtgacctttt ggaccctgag atggtggtga agatttggaa acccactctg
      841 ccctcccctc tgctcaaccc ctctccatca ctccacgatt tccctggaca ctacagcaac
      901 aactggagct ctcagggccg gggtgggctg tgcccccctc acacaccagc agttggacct
      961 cagtgctttg gctgctccct cctcctgccc actcagaacc aaatatctca tggtccttct
     1021 ttttctttct ttcttccttt cttttttttc ttcttttttt atggcagggg tgctggccct
     1081 ttgagtgctg ctgtataagc ctaaacacat agcctttctc tggttttgat gcccatcaca
     1141 ttttgctggg aactgtgtgt gggcagcaca ctctttgagg actgctccgg aggtctcatg
     1201 cccagggtgc tgctgcacgt tacacattta gtgcagcaca ctctggtgtg gctcattcca
     1261 ggcataaaac acggatgcag tgttgagcag tacctgctga cgcttgcatt tggtgttcat
     1321 catcatccag gttttaatat aggtccaatt aggtcggaca ttggaggcat ctctgcacag
     1381 taaaggactt ccagcaaaaa aaacaaccat gcatgaagac agtgatgcct ccagaggaga
     1441 gaagcacagt ctgcccttcc tctggataca gcttcaggca gataatgcaa tttacttgaa
     1501 ttatgaccat taattacgta gtcttaataa gggtactttt cttcagcttc attcttttac
     1561 tggggaagaa gggaagcgag gctgaaaaag ggtggtgttg cttgaggcaa acagaggcag
     1621 tttgcaggtg ggatggttgc tgatgtgcaa gtgagtcccc tctgagccca gacagacact
     1681 gctctgttct c
//

LOCUS       NM_001277490            1452 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus elongator acetyltransferase complex subunit 6 (ELP6),
            mRNA.
ACCESSION   NM_001277490 XM_418484
VERSION     NM_001277490.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1452)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD219096.1, BX932848.1, DR424316.1 and AADN04000184.1.
            On Apr 11, 2013 this sequence version replaced gi:363729718.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX932848.1, BU465771.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                CD219096.1         4-33
            31-388              BX932848.1         2-359
            389-775             DR424316.1         337-723
            776-1441            BX932848.1         747-1412
            1442-1452           AADN04000184.1     3723704-3723714     c
FEATURES             Location/Qualifiers
     source          1..1452
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Leghorn"
     gene            1..1452
                     /gene="ELP6"
                     /gene_synonym="C2H3ORF75; C3orf75; TMEM103"
                     /note="elongator acetyltransferase complex subunit 6"
                     /db_xref="CGNC:3759"
                     /db_xref="GeneID:420379"
     CDS             21..818
                     /gene="ELP6"
                     /gene_synonym="C2H3ORF75; C3orf75; TMEM103"
                     /note="transmembrane protein 103; UPF0405 protein C3orf75;
                     angiotonin-transactivated protein 1; elongator complex
                     protein 6 homolog"
                     /codon_start=1
                     /product="elongator complex protein 6"
                     /protein_id="NP_001264419.1"
                     /db_xref="CGNC:3759"
                     /db_xref="GeneID:420379"
                     /translation="MLEELNELLDATPQRPDTGKFTLLRDSRTDGSFLVHHFLSFYLR
                     AGCKVCFLALVQSFSHYNIVAQKLGVSLTAAKERGQLVFLEGLKSCLDLVFGEEEPSG
                     QPSPLQFISGSVSNLKDLFDFVRTSLAPTDSDSWKGRVLLVDDLSVLLSLGAAPVDVL
                     DFIHYCRMVVCSQLKGNIVVLVHGSEDSEDEENKLVVTSLCHHSNLILWVQGLATGFC
                     KDVHGEIKIIKRLSLESTEQDVIQIYQYKIQDKNVTFFARGLSAAVL"
ORIGIN      
        1 cacacacaca cgcagccgcc atgctggagg agctgaacga actgctggac gccaccccgc
       61 agcgcccgga cacgggtaaa ttcacactgc tgcgagacag cagaacggat ggcagcttcc
      121 tggtgcacca cttcctctcc ttctacctca gagctggctg caaggtttgc ttcctggccc
      181 tggtccagtc cttcagtcac tataacatcg tagcacagaa gctgggagtc agtctgacag
      241 ctgccaagga gcggggacag cttgtctttt tggaaggcct caagtcctgc cttgacctcg
      301 tgtttgggga ggaggagccg tcaggacagc ccagtcctct tcagtttata agtgggagcg
      361 tttccaacct caaagacctg tttgacttcg tccggacgtc cctggcgccc actgacagcg
      421 actcctggaa gggccgggtg ctgctggtgg atgatctcag cgtgctgctc agcctgggtg
      481 ctgcgccagt ggacgtgctg gacttcatcc actactgcag aatggtggtg tgctctcagc
      541 tcaaggggaa cattgtggtg ctggttcatg gcagcgagga ttcagaagat gaggagaaca
      601 agctggtggt gacctccctg tgtcatcaca gcaacctgat cctgtgggtg caggggctgg
      661 caactggctt ctgcaaggat gttcatgggg agattaaaat aattaagaga ctgtccttgg
      721 agtcaacaga gcaggacgtc atccagatct accagtacaa gatccaggac aagaatgtca
      781 ccttttttgc tagagggctg tcagctgctg tcctgtgatg cagtgatacc acacagagct
      841 gtgagagcac cgcagcacaa ggagaactgc tactgacgat tggaacctat agattggtac
      901 ctatagatcg gatgtgctgc aaaaccagcc tgcttgcttc ctcggtgcct tccaggagct
      961 gtacagcaac ctggcctaag agggaagctt aatagcatct cgaactgcat gcagacaagg
     1021 gcatcagctt gccgagagct tgttgcatcc ctttgtcatc ccagcctgtt cccagcacac
     1081 aaggccacaa agaacagcac caactgacat ggatgtccct tggagcatgt acatacaagc
     1141 agggggcatg ccctgagggc tgggcatgcc tcaccttttc cggttgtgta tggctgcccc
     1201 accctggcat ttaaagagat gacacagaga gggcggaggc agggatggct tgggaacatg
     1261 ttgcaattct tacctttctc ccagctctgg gatggaagag atttgctcaa ctcccagttg
     1321 acacagagtt aaacaataca cagctctgta tatagctgct ctccttgctg atgtaagact
     1381 tggaggccgc ctcgcttggg tgcttccttg ctttttgtta cttttaatat aatataaaac
     1441 cactgtgccc at
//

LOCUS       NM_001277477             759 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus retinoic acid receptor responder (tazarotene induced)
            2 (RARRES2), transcript variant 2, mRNA.
ACCESSION   NM_001277477
VERSION     NM_001277477.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000184.1, BU267206.1 and BU241015.1.
            
            Transcript Variant: This variant (2) differs in the 3' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR385440.1, BU408629.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                AADN04000184.1     4195720-4195762     c
            44-64               AADN04000184.1     4195699-4195719     c
            65-561              BU267206.1         51-547
            562-582             AADN04000184.1     4194254-4194274     c
            583-742             AADN04000184.1     4193991-4194150     c
            743-759             BU241015.1         671-687
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Red Jungle Fowl"
     gene            1..759
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="retinoic acid receptor responder (tazarotene
                     induced) 2"
                     /db_xref="CGNC:3645"
                     /db_xref="GeneID:420366"
     misc_feature    45..47
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="upstream in-frame stop codon"
     CDS             81..569
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="retinoic acid receptor responder protein 2"
                     /codon_start=1
                     /product="retinoic acid receptor responder protein 2
                     precursor"
                     /protein_id="NP_001264406.1"
                     /db_xref="CGNC:3645"
                     /db_xref="GeneID:420366"
                     /translation="MKLLLGIAVAVLALADAGQSPLQRRVVKDVLDYFHSRSNVQFLF
                     REQSVEGAVERVDSSGTFVQLHLNLAQTACRKQAQRKQNCRIMENRRKPVCLACYKFD
                     SSDVPKVLDKYYNCGPSHHLAMKDIKHRDEAECRAVEEAGKMSDVLYLPGMFAFSKGL
                     PA"
     sig_peptide     81..131
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 gttcccagga aattggttaa tgagagacca aaatcaacaa gcagtagtgg gcagcaggct
       61 ggccgggccg cgcagtgggg atgaagctgc tgctgggcat cgccgtggcc gtgctggcgt
      121 tggcagacgc cgggcagagc cctctgcagc ggcgcgtggt gaaggatgtg ctggactact
      181 tccacagccg cagcaacgtc cagttcctct ttagggagca gtcggtggaa ggggccgtcg
      241 agagagtgga ctcatcgggg acgttcgtcc agctgcacct taacctcgca cagacggcat
      301 gcaggaagca ggcacagagg aaacagaact gcaggatcat ggagaacagg aggaagccag
      361 tctgcttggc ctgctacaag tttgacagca gcgatgtccc caaggtgctg gacaagtact
      421 acaactgtgg ccccagccac cacctggcca tgaaggacat caagcaccgt gacgaggctg
      481 agtgcagggc tgtggaggag gccggcaaga tgagtgatgt cctctatctg ccaggcatgt
      541 ttgctttctc caaggggctg ccagcctagg tgcccacaca catccagcgg ccgctgcatc
      601 cccagcccag gaggaggatg ctggcctggg gccccccaac ccccagcttg ctgcccccca
      661 gcgctgtgca gtgaagggaa ggtcgtcccg cagtgccccc cggctcctgg cagtgtctgc
      721 atgcaccatt aaaccccagc tctgcctctg tttctctgc
//

LOCUS       NM_001277476             782 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus retinoic acid receptor responder (tazarotene induced)
            2 (RARRES2), transcript variant 1, mRNA.
ACCESSION   NM_001277476 XM_003640642 XM_418471
VERSION     NM_001277476.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000184.1, BX271418.4 and BX932071.2.
            On or before Apr 10, 2013 this sequence version replaced
            gi:363729706, gi:363729708.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX932071.2, BU125657.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-65                AADN04000184.1     4195698-4195762     c
            66-550              BX271418.4         39-523
            551-772             BX932071.2         483-704
            773-782             AADN04000184.1     4193974-4193983     c
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Red Jungle Fowl"
     gene            1..782
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="retinoic acid receptor responder (tazarotene
                     induced) 2"
                     /db_xref="CGNC:3645"
                     /db_xref="GeneID:420366"
     misc_feature    45..47
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="upstream in-frame stop codon"
     CDS             81..569
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /note="retinoic acid receptor responder protein 2"
                     /codon_start=1
                     /product="retinoic acid receptor responder protein 2
                     precursor"
                     /protein_id="NP_001264405.1"
                     /db_xref="CGNC:3645"
                     /db_xref="GeneID:420366"
                     /translation="MKLLLGIAVAVLALADAGQSPLQRRVVKDVLDYFHSRSNVQFLF
                     REQSVEGAVERVDSSGTFVQLHLNLAQTACRKQAQRKQNCRIMENRRKPVCLACYKFD
                     SSDVPKVLDKYYNCGPSHHLAMKDIKHRDEAECRAVEEAGKMSDVLYLPGMFAFSKGL
                     PA"
     sig_peptide     81..131
                     /gene="RARRES2"
                     /gene_synonym="chemerin"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 gttcccagga aattggttaa tgagagacca aaatcaacaa gcagtagtgg gcagcaggct
       61 ggccgggccg cgcagtgggg atgaagctgc tgctgggcat cgccgtggcc gtgctggcgt
      121 tggcagacgc cgggcagagc cctctgcagc ggcgcgtggt gaaggatgtg ctggactact
      181 tccacagccg cagcaacgtc cagttcctct ttagggagca gtcggtggaa ggggccgtcg
      241 agagagtgga ctcatcgggg acgttcgtcc agctgcacct taacctcgca cagacggcat
      301 gcaggaagca ggcacagagg aaacagaact gcaggatcat ggagaacagg aggaagccag
      361 tctgcttggc ctgctacaag tttgacagca gcgatgtccc caaggtgctg gacaagtact
      421 acaactgtgg ccccagccac cacctggcca tgaaggacat caagcaccgt gacgaggctg
      481 agtgcagggc tgtggaggag gccggcaaga tgagtgatgt cctctatctg ccaggcatgt
      541 ttgctttctc caaggggctg ccagcctagg tgcccacaca cacaccccct gtcccctctc
      601 cgcagtccag cggccgctgc atccccagcc caggaggagg atgctggcct ggggcccccc
      661 aacccccagc ttgctgcccc ccagcgctgt gcagtgaagg gaaggtcgtc ccgcagtgcc
      721 ccccggctcc tggcagtgtc tgcatgcacc attaaacccc agctctgcct ctgtttctct
      781 gc
//

LOCUS       NM_001199231            2038 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus small integral membrane protein 15 (SMIM15), mRNA.
ACCESSION   NM_001199231 XM_001233977
VERSION     NM_001199231.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
            HS, Cho BW and Han JY.
  TITLE     Analysis of chicken embryonic gonad expressed sequenced tags
  JOURNAL   Anim. Genet. 37 (1), 85-86 (2006)
   PUBMED   16441308
REFERENCE   3  (bases 1 to 2038)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ453243.1, AC188450.3, BI394192.1 and CV853891.1.
            On Jan 12, 2012 this sequence version replaced gi:312839851.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ453243.1, AJ448907.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201375, SAMEA2201377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                AJ453243.1         2-13
            13-16               AC188450.3         187484-187487       c
            17-57               AJ453243.1         18-58
            58-67               AJ453243.1         60-69
            68-639              BI394192.1         1-572
            640-1838            AC188450.3         184697-185895       c
            1839-2038           CV853891.1         482-681
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="Z"
                     /map="Z"
     gene            1..2038
                     /gene="SMIM15"
                     /gene_synonym="C5orf43; CZH5ORF43"
                     /note="small integral membrane protein 15"
                     /db_xref="CGNC:56176"
                     /db_xref="GeneID:770642"
     misc_feature    27..29
                     /gene="SMIM15"
                     /gene_synonym="C5orf43; CZH5ORF43"
                     /note="upstream in-frame stop codon"
     CDS             141..365
                     /gene="SMIM15"
                     /gene_synonym="C5orf43; CZH5ORF43"
                     /note="UPF0542 protein C5orf43 homolog"
                     /codon_start=1
                     /product="small integral membrane protein 15"
                     /protein_id="NP_001186160.1"
                     /db_xref="CGNC:56176"
                     /db_xref="GeneID:770642"
                     /translation="MFDVKAWAVYIVEWAAKDPYGFLTTVILVLTPLFIISAALSWKL
                     AKMIETREREQKKKRKRQENIVKAKRAKKD"
     misc_feature    198..260
                     /gene="SMIM15"
                     /gene_synonym="C5orf43; CZH5ORF43"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5F409.1);
                     transmembrane region"
ORIGIN      
        1 gcttcttgct tcctgcttcc gctcggtagc gcggcgcgcc gcggggtagc gggacctggt
       61 gctgctcgtc cgtcgcttgc cgcgcccgcg gcgccggcct acctctggtg cagtgtttcc
      121 cccataacaa agcggctgag atgtttgacg tgaaggcttg ggctgtgtac attgtggaat
      181 gggctgccaa ggacccctat ggcttcctca ctacggtgat cctggtcctc acgcccctgt
      241 tcatcatcag cgcggcactg tcgtggaagc ttgcaaagat gattgagacc agggagcgag
      301 agcagaagaa gaaacggaaa cgccaggaga acattgtgaa ggccaaacga gcaaagaagg
      361 attaaatggg caagaaaggc cttccttggg cagagaattc actttattga tggagcactg
      421 ctgtacattt tgtgttgtaa ccatcctttg atacttgatg ctgttgtttc ttgaattatg
      481 agattttaac ttcttgagaa tatttttttt ctgctgaaat catctgtgtt agaagttgcc
      541 ccagtgacac agtcacttca tctcctgctt atatttccat gcagactgct tctctaaatt
      601 tgcatgttat atttaaaaat gaaatagtcg gggagcatta ggggcatatc tttttcctta
      661 gctgagctat gactcaaaga gagtcaaatt atggggataa tgtaaatgac tccttaatgc
      721 tatgaccttt ggtttcttag tgtagcacac ccttctccat tgcagcagta gttcatgttg
      781 tgcttacgtg tatttgcagt tcctggttta actggactac aggaagggag gttctggtac
      841 acctgcagca gagctacaga gcagctagct tctgagcttc ttgtttgctg ttgtgtttga
      901 ctgacacact ttcaaggcat gcagtgcgta tggctgtgca gttcattcac tgcatgccca
      961 tcaggtctgc agtagctcag ctcatggggc ttgtctgcac catgaaccaa actgactcct
     1021 cctgtttcct ccacaaccca cccatcagca gtcttcatat tcagcccaaa ctctgggaaa
     1081 ccgattgctt atcttcagta tcttcatttg tctgaggcta ctcgtgttct acagagtaca
     1141 ctatagcgtt gtctggtttt ccctaattat cacctgaaca gtccatctct aacttgtttg
     1201 tctgtagaag cttttttgcc tcaaagaata gccataagtg ggatcagatg aaaggcccag
     1261 gtggccttga gttctgtctt ttgtgacctg tagcagttgg ccaagggaga ctacccaagt
     1321 ctgatatgca cgctggtgac acaagttatt cctaattgct agccctgtag ctacctgcac
     1381 tttaggacct tctgagttca ggtggtatca ttttgttctg atagctcttg aagatctgct
     1441 gtacgccagg ttacaaaatg ctggcatagc agaaaaagtc caagtgaggt ttctgttgta
     1501 aatacgccaa aattttttaa cctcgattcc aattcatctt tttctaacaa atgattaatt
     1561 tttcacagcc tgacttctat cagcctaatt ctaaagagtc tgtggaagtc attaggtttt
     1621 tagacagcat atttctaaat ggcagcatgg agctgtgctt tctagcaact agtccattat
     1681 atggttaaaa gtaaaatctt aagataatgt cccattcagc agagacctat agagctagct
     1741 gacagcagca agataagggg gaagttttac tgaaatgact tgaagtaaat atgaagtact
     1801 tagctgcaac cagtatctga tgaccatctt tccgttctgt tggtcagaac agcaagcatt
     1861 actggaatga tgttttgaca ctttgtggta catgacatta aatcaccact cttggaaatg
     1921 tcaaatgtgt atgtattcca cctttgatac ctagatagtt caaaatgcat acctacatgg
     1981 tttaaaataa atttgatact ttttcaaaat atacttttta aaaaaaaaaa aaaaaaaa
//

LOCUS       NM_001031013             971 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus low density lipoprotein receptor class A domain
            containing 4 (LDLRAD4), mRNA.
ACCESSION   NM_001031013 XM_419130
VERSION     NM_001031013.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ720368.1 and BU264529.1.
            On Nov 22, 2011 this sequence version replaced gi:71896400.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-272               AJ720368.1         1-272
            273-292             BU264529.1         99-118
            293-971             AJ720368.1         1501-2179
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Leghorn"
     gene            1..971
                     /gene="LDLRAD4"
                     /gene_synonym="C18orf1; C2H18ORF1"
                     /note="low density lipoprotein receptor class A domain
                     containing 4"
                     /db_xref="CGNC:51390"
                     /db_xref="GeneID:421044"
     misc_feature    67..69
                     /gene="LDLRAD4"
                     /gene_synonym="C18orf1; C2H18ORF1"
                     /note="upstream in-frame stop codon"
     CDS             121..822
                     /gene="LDLRAD4"
                     /gene_synonym="C18orf1; C2H18ORF1"
                     /note="clone 22"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 4"
                     /protein_id="NP_001026184.2"
                     /db_xref="CGNC:51390"
                     /db_xref="GeneID:421044"
                     /translation="MVVVIICLLNHYKLSTRSFINRQSQSRRQEDTLQTEGCLWPSES
                     SVSRQGASEIMYAPRSRDRFTAPSFMQRDRFSRFQPTYPYMQHEIDLPPTISLSDGEE
                     PPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDISMYNGGPCPPSSNSGI
                     SATNYSSNGRMEGPPPTYSEVMGHYPGSSFFHHQHSNAPPSSQRGSRLQFQQNNSEST
                     IVPSKGQDRKPGNLV"
ORIGIN      
        1 gagggcgcgg aggctccgcc gggcgccggg cggccgcggc ttaaagagcg gcgcggcgct
       61 gcgcggtaag ctgaactgga gtttgttcaa atcatcatta tcatcgtggt tataactgtt
      121 atggtggtag tgatcatctg cttgttgaac cattacaaac tatcgacgcg ctcctttatc
      181 aaccggcaga gccaaagcag aagacaggag gatactttgc agacagaagg gtgcttgtgg
      241 ccttcggaaa gctcagtttc acgccagggt gcttcagaga ttatgtatgc tccaaggtcc
      301 agggacaggt ttaccgcccc atcttttatg cagcgggacc gtttcagtcg cttccagccc
      361 acttacccat acatgcagca tgagattgac cttcctccaa ccatttccct ctcagatggg
      421 gaagagccgc cgccatacca aggcccgtgc accctgcagc tccgggaccc agagcagcag
      481 atggagctca accgggaatc tgtcagggca ccgcccaacc gaaccatttt tgatagcgac
      541 ttgatagaca tttccatgta caatgggggc ccctgcccac cgagcagcaa ttcgggcata
      601 agtgcaacca actatagcag taatggaagg atggaaggac cacccccgac gtacagcgag
      661 gtcatggggc actacccagg ctcctcgttt ttccatcacc agcacagcaa cgctcctcct
      721 tcctcgcaga gggggagcag acttcagttt cagcagaaca attcagagag cacaattgtc
      781 cccagcaaag gccaagaccg gaaaccaggg aacctggtct aagtcactct ccgacgtgca
      841 tttggactga agacaagaga ttgaagcagg gcggcggagg aagagccccg tgctccggtg
      901 cacaatgttg ttacatttca cgtggtacaa cttagtaaaa ccaaacgtgc aaaccaaaaa
      961 aaaaaaaaaa a
//

LOCUS       NM_001195562            2664 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus patched domain containing 4 (PTCHD4), mRNA.
ACCESSION   NM_001195562 XM_420069
VERSION     NM_001195562.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000287.1.
            On Sep 17, 2010 this sequence version replaced gi:118089240.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201363,
                              SAMEA2201366 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-549               AADN04000287.1     582005-582553
            550-1030            AADN04000287.1     607213-607693
            1031-2664           AADN04000287.1     664513-666146
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Red Jungle Fowl"
     gene            1..2664
                     /gene="PTCHD4"
                     /gene_synonym="C3H6ORF138; C6orf138; dJ402H5.2"
                     /note="patched domain containing 4"
                     /db_xref="CGNC:51608"
                     /db_xref="GeneID:422064"
     CDS             1..2664
                     /gene="PTCHD4"
                     /gene_synonym="C3H6ORF138; C6orf138; dJ402H5.2"
                     /note="patched domain-containing protein C6orf138"
                     /codon_start=1
                     /product="patched domain-containing protein 4"
                     /protein_id="NP_001182491.1"
                     /db_xref="CGNC:51608"
                     /db_xref="GeneID:422064"
                     /translation="MLRQVIHRGLQSFFYKLGLFVSRHPVFFLTVPAVLTIIFGFSLL
                     NRFQPDTDLESLVAPSHSLAKIERSLASSLFSLDQSKSQLYSDLHTPGRYGRVILLSK
                     PGGNILHQADVILQIHRAVLEMKVNYKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDL
                     RQAALSNKTTARVQVSYPNTKLKDGRSSFIGHQLGGVMEVPNSKDQRVKSARAIQITY
                     YLQTYGSVTQDLIGEKWESEFCKLMHKMQLDHQDLQLYSLASFSLWKDFHQTSLLARG
                     KILVSLMLILLTATLSSSMKDCLRSKPFLGLLGVLTICISSVTAAGIFFITDGKYNST
                     LLGIPFFAMGHGTKGVFELLSGWRRTRENLPFKDRVADAYSDVMVSYTMTSSLYFIAF
                     GMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKI
                     PSAEYLDRKPVWFQTMMNDGHQHSSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFV
                     VILYLIYASFSFMGCLQINDGANIINLLASESPSVSYALIQQKYFSNYSPVIGFYIYE
                     PLEYWNGTVQEDLKTLSQGFNTVSWIEQYYQFLRVGNISATNKSDFISILQSNFLKKP
                     EFQHFKNDIIFSKAGDENNIIASRLYLVARTSENTQREAVELLEKLRPLSLIQSIKFI
                     VFNPTFVFMDHYGLSVTMPVLISGFGILLVLILTFFLVIHPLGNFWLILSVTSIELGV
                     LGLMTLWNVDMDWISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKNSLQEHGT
                     AILQNVSSFLIGLVPLLFVPSNLTFTLFKCLLLAGSCTLLHCFVILPVFLTFFPPSKK
                     HHKKKKRAKRKEREEIECIEIQENPDHVTAV"
ORIGIN      
        1 atgctgcggc aggtgataca cagagggctc cagtcgtttt tctacaagct gggcttattc
       61 gtgagcaggc atccggtgtt tttcctcact gtgcccgcag tcctgaccat catcttcggc
      121 ttcagcctgc tcaaccgctt ccagcctgac actgacctgg agagcctggt agcccccagc
      181 cacagcctgg ccaagatcga gaggagctta gccagcagcc tgttctccct cgatcaatcc
      241 aaaagccagc tgtattcgga cttgcacacc ccggggaggt atggcagggt gattctcctc
      301 tccaaacccg gaggcaatat tttgcatcag gctgatgtga tcctgcagat ccaccgagcc
      361 gtgctggaaa tgaaggtgaa ctacaaaggc tataattata ctttttccca tctgtgtgtg
      421 ttgagaaatc aggataagaa atgcgtgctg gatgatatta tttcagtgct agaggatctg
      481 aggcaggctg ccctctccaa taagacaaca gccagggtgc aagtgagcta tcccaacact
      541 aaattaaagg atggaaggag cagttttatt ggccaccagc ttggaggggt catggaagtg
      601 cccaacagca aggaccagag agtcaaatca gccagagcca tccaaatcac ttactacctc
      661 caaacgtatg gctctgtcac ccaggacctc attggggaga agtgggagag tgaattctgt
      721 aaactgatgc acaagatgca gctggatcac caagatctgc agctctactc gctggcgtcc
      781 ttcagcctct ggaaggactt ccaccagacc agtctcttgg ccaggggcaa gattttggtg
      841 agcctgatgc tgatcctcct gactgctacc ctctcgagct ccatgaagga ctgcctgcgt
      901 agcaaacctt tcctgggact cttgggagta ctcactatct gtatttccag tgtcactgcg
      961 gcagggatat ttttcattac tgatggaaaa tataattcta ctctgttggg aatccctttc
     1021 ttcgctatgg gtcatggaac caaaggagta ttcgaacttc tttcaggatg gcgtcgaaca
     1081 agagaaaatc ttccattcaa ggacagagta gcagatgcct actcagatgt catggtgtcc
     1141 tatacaatga caagctcctt gtatttcata gcctttggca tgggtgcaag ccctttcact
     1201 aacattgaag ccgtaaaagt cttttgccag aacatgtgtg tctccatcct gttgaactac
     1261 ttctatatct tctcattctt tggctcctgc ctggtctttg ctggccagtt ggagcagaac
     1321 cgttaccaca gtatcttctg ctgtaaaatc ccttcagcag aatacctgga ccggaagcct
     1381 gtgtggttcc agaccatgat gaatgatggc catcaacatt cttctcatca tgagaccaac
     1441 ccataccagc atcactttat ccagcatttc ctccgagagc attacaatga gtggattacc
     1501 aacatctatg tcaagccttt tgtggtgata ctgtatctca tctatgcctc tttctccttc
     1561 atggggtgct tacagattaa tgatggagcc aacattatta accttcttgc cagtgagtct
     1621 ccaagcgtct cctatgccct cattcagcaa aagtacttca gcaactacag cccggtgata
     1681 ggattctata tttacgaacc tctggagtac tggaatggca ctgtgcaaga agacctaaaa
     1741 acactgagcc aagggttcaa cacagtgtcc tggatcgaac agtattacca gttccttcga
     1801 gtgggtaaca tcagtgcaac taacaaaagt gactttatca gtatcctcca gagcaacttt
     1861 ttaaaaaagc cagaattcca gcacttcaaa aatgacatca tattctctaa agctggagat
     1921 gagaataaca taatagcttc tcgtttgtac ctggtggcca ggacgagtga aaacacacag
     1981 agggaggcag tggaattact ggagaaactg agaccgctct ctcttataca gagcatcaag
     2041 ttcatagtgt tcaatcctac ctttgttttc atggaccact atggtttatc agtaactatg
     2101 cctgtcctga tttctggttt tggcatcctg ttggtgttaa tactgacctt tttcctggtt
     2161 atccatcctc tgggaaattt ctggttgatt ctcagcgtca cctcaataga gctgggcgtc
     2221 cttggcttga tgaccttatg gaatgtagac atggattgga tttctatact gtgccttatc
     2281 tacaccttga attttgccat agatcactgt gcacccctgc tttatacatt tgtactagct
     2341 actgagcaca cccgaactca atgtataaag aactccctcc aagagcatgg gacagccatt
     2401 ttgcagaacg tttcttcttt tcttattggg ttggtccccc ttctctttgt gccttcaaac
     2461 ttgaccttca cactgttcaa atgcttgctg cttgccggca gttgcacact tctgcactgt
     2521 tttgttattt tgcccgtctt tctaaccttt ttcccacctt ccaaaaagca ccacaaaaaa
     2581 aagaaacgag ccaaaaggaa ggaacgagaa gagattgaat gcatagagat tcaggagaat
     2641 cctgatcacg tgacagcagt ctga
//

LOCUS       NM_001194996            1525 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus trafficking protein particle complex 13 (TRAPPC13),
            transcript variant 1, mRNA.
ACCESSION   NM_001194996
VERSION     NM_001194996.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Froman DP, Kirby JD and Rhoads DD.
  TITLE     An expressed sequence tag analysis of the chicken reproductive
            tract transcriptome
  JOURNAL   Poult. Sci. 85 (8), 1438-1441 (2006)
   PUBMED   16903475
REFERENCE   2  (bases 1 to 1525)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   3  (bases 1 to 1525)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC187110.2, BU335726.1, BU388633.1 and AC145935.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201357,
                              SAMEA2201361 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                AC187110.2         219680-219706
            28-789              BU335726.1         1-762
            790-1336            BU388633.1         42-588
            1337-1525           AC145935.3         50710-50898
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="Z"
                     /map="Z"
                     /breed="Red Jungle Fowl"
     gene            1..1525
                     /gene="TRAPPC13"
                     /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
                     /note="trafficking protein particle complex 13"
                     /db_xref="CGNC:53002"
                     /db_xref="GeneID:427165"
     CDS             58..1314
                     /gene="TRAPPC13"
                     /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0533 protein C5orf44; trafficking protein particle
                     complex subunit 13"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 13
                     isoform 1"
                     /protein_id="NP_001181925.1"
                     /db_xref="CGNC:53002"
                     /db_xref="GeneID:427165"
                     /translation="MDVNQPKQEHLLALKVMRLTKPTLFTNIPVTCEERDLPGNLFNQ
                     LMKDDPSTVKGAEALMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
                     LQTSSQRLNLSASTAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYF
                     RKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIM
                     YNVAELNTVDSAGESESTFGSRTYLQPMDTRQYLYCLKPKQEFAEKAGVIKGVTVIGK
                     LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLETIPDTVNLEEPFDITCKITNCSS
                     ERTMDLVLEMCNTNSIHWCGVSGRQLGKLHPSSSLRLALTLLSSVQGLQSVSGLRLTD
                     TFLKRTYEYDDIAQVCVVSSKVKQES"
ORIGIN      
        1 gcgctgtgct tacgcacttc ttccctggtt gcggcggcca ggtctcgcgg ccgcaccatg
       61 gacgttaacc agcccaagca ggagcacctg ctggccctga aagtgatgag gttaacaaaa
      121 cctaccttat tcactaatat tccagtgact tgtgaagaaa gagatttgcc aggtaatcta
      181 tttaaccagc tcatgaaaga tgatccttct actgtaaaag gagcagaagc tttgatgcta
      241 ggagaaatgc tgactttgcc tcaaaatttt ggaaatatat ttctgggaga aacattttcc
      301 agttacatta gtgtacataa tgatagtaat caagttgtca aggacatact ggtgaaggct
      361 gatcttcaga caagttctca gcgcttgaac ctttcagctt ctactgctgc agtggcagaa
      421 cttaaacctg actgctgtat tgatgatgtg attcatcacg aagtgaagga aataggaacg
      481 cacatcttag tttgtgcagt aagttatact acgcaagcag gagagaagat gtatttcaga
      541 aagttcttca aatttcaggt gctcaaacca ctagatgtga aaaccaaatt ctacaatgcg
      601 gagagtgacc tcagttctgt gacagatgaa gtgtttctgg aagctcagat tcagaatatc
      661 actacctctc caatgtttat ggagaaggtt tctttagagc catccattat gtacaacgtt
      721 gcagaactga acacagttga ctcagcaggg gaaagtgagt caacttttgg ctcaagaact
      781 tacttacaac ctatggacac acgtcagtat ttatattgcc tgaaaccaaa gcaggaattt
      841 gcagagaaag ctggcgtaat aaaaggtgta actgtgattg gtaaactaga tatcgtatgg
      901 aaaacgaatc taggtgagcg aggaagactg caaactagcc agctccaaag aatggctcct
      961 ggctatggtg atgtaaggct ttctctggag acaataccag acaccgtaaa tttggaagag
     1021 ccttttgata ttacttgtaa aataacaaat tgcagcagtg aaaggactat ggatctggtt
     1081 ttagaaatgt gcaatactaa ttccatccac tggtgtggag tttctggaag acaacttgga
     1141 aaattacatc ctagttcctc tctccgtctt gcacttacat tattgtcttc agtgcaggga
     1201 ttgcaaagtg tttctggctt aagacttacc gacacatttt tgaagagaac atacgaatat
     1261 gatgatattg cacaggtctg cgtcgtttct tcaaaagtaa aacaagaaag ctgaagaaaa
     1321 gttttatttc tgctgtttgt tttttttgga ccaacttctt gtgttttttg cagttaaatc
     1381 atattgcgta aagagaaaat taacccccag tatatgcata gacacaagtt gcttatttaa
     1441 tttctctgag cattttttta atgttttaaa atcttttgaa aagatgtata tgcatctcaa
     1501 taaaaataaa gcctttgaaa aaaaa
//

LOCUS       NM_001006577            1504 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus trafficking protein particle complex 13 (TRAPPC13),
            transcript variant 2, mRNA.
ACCESSION   NM_001006577 XM_424753
VERSION     NM_001006577.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Froman DP, Kirby JD and Rhoads DD.
  TITLE     An expressed sequence tag analysis of the chicken reproductive
            tract transcriptome
  JOURNAL   Poult. Sci. 85 (8), 1438-1441 (2006)
   PUBMED   16903475
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   3  (bases 1 to 1504)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC187110.2, AJ720892.1, DT656730.1 and AC145935.3.
            On Aug 17, 2010 this sequence version replaced gi:57527713.
            
            Transcript Variant: This variant (2) lacks an in-frame exon in the
            coding region, compared to variant 1. The encoded isoform (2) is
            shorter than isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720892.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201361, SAMEA2201363
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                AC187110.2         219680-219731
            53-448              AJ720892.1         54-449
            449-684             DT656730.1         216-451
            685-773             AJ720892.1         688-776
            774-786             AJ720892.1         778-790
            787-1347            AJ720892.1         792-1352
            1348-1348           AC145935.3         50742-50742
            1349-1476           AJ720892.1         1353-1480
            1477-1504           AC145935.3         50871-50898
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="Z"
                     /map="Z"
                     /breed="Red Jungle Fowl"
     gene            1..1504
                     /gene="TRAPPC13"
                     /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
                     /note="trafficking protein particle complex 13"
                     /db_xref="CGNC:53002"
                     /db_xref="GeneID:427165"
     CDS             58..1293
                     /gene="TRAPPC13"
                     /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
                     /note="isoform 2 is encoded by transcript variant 2;
                     UPF0533 protein C5orf44; trafficking protein particle
                     complex subunit 13"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 13
                     isoform 2"
                     /protein_id="NP_001006577.2"
                     /db_xref="CGNC:53002"
                     /db_xref="GeneID:427165"
                     /translation="MDVNQPKQEHLLALKVMRLTKPTLFTNIPVTCEERDLPGNLFNQ
                     LMKDDPSTVKGAEALMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
                     LQTSSQRLNLSASTAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYF
                     RKFFKFQVLKPLDVKTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVAEL
                     NTVDSAGESESTFGSRTYLQPMDTRQYLYCLKPKQEFAEKAGVIKGVTVIGKLDIVWK
                     TNLGERGRLQTSQLQRMAPGYGDVRLSLETIPDTVNLEEPFDITCKITNCSERTMDLV
                     LEMCNTNSIHWCGVSGRQLGKLHPSSSLRLALTLLSSVQGLQSVSGLRLTDTFLKRTY
                     EYDDIAQVCVVSSKVKQES"
ORIGIN      
        1 gcgctgtgct tacgcacttc ttccctggtt gcggcggcca ggtctcgcgg ccgcaccatg
       61 gacgttaacc agcccaagca ggagcacctg ctggccctga aagtgatgag gttaacaaaa
      121 cctaccttat tcactaatat tccagtgact tgtgaagaaa gagatttgcc aggtaatcta
      181 tttaaccagc tcatgaaaga tgatccttct actgtaaaag gagcagaagc tttgatgcta
      241 ggagaaatgc tgactttgcc tcaaaatttt ggaaatatat ttctgggaga aacattttcc
      301 agttacatta gtgtacataa tgatagtaat caagttgtca aggacatact ggtgaaggct
      361 gatcttcaga caagttctca gcgcttgaac ctttcagctt ctactgctgc agtggcagaa
      421 cttaaacctg actgctgtat tgatgatgtg attcatcacg aagtgaagga aataggaacg
      481 cacatcttag tttgtgcagt aagttatact acgcaagcag gagagaagat gtatttcaga
      541 aagttcttca aatttcaggt gctcaaacca ctagatgtga aaaccaaatt ctacaatgcg
      601 gagacagatg aagtgtttct ggaagctcag attcagaata tcactacctc tccaatgttt
      661 atggagaagg tttctttaga gccatccatt atgtacaacg ttgcagaact gaacacagtt
      721 gactcagcag gggaaagtga gtcaactttt ggctcaagaa cttacttaca acctatggac
      781 acacgtcagt atttatattg cctgaaacca aagcaggaat ttgcagagaa agctggcgta
      841 ataaaaggtg taactgtgat tggtaaacta gatatcgtat ggaaaacgaa tctaggtgag
      901 cgaggaagac tgcaaactag ccagctccaa agaatggctc ctggctatgg tgatgtaagg
      961 ctttctctgg agacaatacc agacaccgta aatttggaag agccttttga tattacttgt
     1021 aaaataacaa attgcagtga aaggactatg gatctggttt tagaaatgtg caatactaat
     1081 tccatccact ggtgtggagt ttctggaaga caacttggaa aattacatcc tagttcctct
     1141 ctccgtcttg cacttacatt attgtcttca gtgcagggat tgcaaagtgt ttctggctta
     1201 agacttaccg acacattttt gaagagaaca tacgaatatg atgatattgc acaggtctgc
     1261 gtcgtttctt caaaagtaaa acaagaaagc tgaagaaaag ttttatttct gctgtttgtt
     1321 ttttttggac caacttcttg tgttttttgc agttaaatca tattgcgtaa agagaaaatt
     1381 aacccccagt atatgcatag acacaagttg cttatttaat ttctctgagc atttttttaa
     1441 tgttttaaaa tcttttgaaa agatgtatat gcatctcaat aaaaataaag cctttgaaaa
     1501 aaaa
//

LOCUS       NM_001145430             928 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus small integral membrane protein 20 (SMIM20), mRNA.
ACCESSION   NM_001145430 XM_001232657
VERSION     NM_001145430.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR523170.1 and BU307818.1.
            On Feb 28, 2009 this sequence version replaced gi:118090651.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX933175.1, CR523170.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201368, SAMEA2201373
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-921               CR523170.1         1-921
            922-928             BU307818.1         715-721
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
                     /breed="Leghorn"
     gene            1..928
                     /gene="SMIM20"
                     /gene_synonym="C4H4ORF52; C4orf52; phoenixin"
                     /note="small integral membrane protein 20"
                     /db_xref="CGNC:55214"
                     /db_xref="GeneID:769392"
     CDS             217..420
                     /gene="SMIM20"
                     /gene_synonym="C4H4ORF52; C4orf52; phoenixin"
                     /codon_start=1
                     /product="small integral membrane protein 20"
                     /protein_id="NP_001138902.1"
                     /db_xref="CGNC:55214"
                     /db_xref="GeneID:769392"
                     /translation="MARLFRTLVIFGGFAAVVGAAFYPIYFRPLLLPEEYKREQSINR
                     AGIVQENIQPPGLKVWSDPFGRK"
ORIGIN      
        1 gggccggggc ggcatccggt cgcggggggg ccgagcagcg tcggagcgac agagcgctgg
       61 cgctcggcag gaagcgtccg ccccagcgcc gtcgctgctt ctgccgagct cggcggcggc
      121 acgccgccct ccccgctccg cccgccgggc cccgtctcgc ccggaagcgg cggccgcgga
      181 gcttccgtcc cggacgcggg gcgtccctcc gccgccatgg ccaggctgtt ccgcacgctc
      241 gtcatcttcg gcggcttcgc ggccgtggtg ggggccgcct tctaccccat ctacttccgg
      301 ccgctgctgc tgcccgagga gtacaagaga gaacagtcaa taaaccgagc tggtattgtt
      361 caagagaata tccagcctcc agggttaaaa gtgtggtctg atccatttgg aagaaagtaa
      421 tgttgccagc gtggtgcatt tcaaggtaga actgaagatg aacttcaatt atttcttcgt
      481 acactgaagt atgcctttgg gcgtcgctgg agaagatttc tgattatgct gtgtgggcat
      541 atgaggagca ataaatgcta ctggttggaa agccaagagg aggaaacatc ccagttttgg
      601 cagggtgctg tggcacaatg gacagactgc tagagaggtg actgtttctt gtgttaagaa
      661 gtaaaatatt tacttccttg agaaaaagga agaagaatta tttttgtggt taatctgtaa
      721 acatttggag aacaaattat gaatagacta aattatgcag accactgcag tttcctccct
      781 agtttgaaaa ttactttctg tggtttaatt gtgaaaacat gatagaagtt tatactaaga
      841 gagactggtg aagatttgct ctctcttagg cagaatataa catggtgagt gagaatttgt
      901 gcattaaaat ttcttccatt caaatcaa
//

LOCUS       NM_001110060             714 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus ras-related protein Rab-23 (RAB23), mRNA.
ACCESSION   NM_001110060 XM_419896
VERSION     NM_001110060.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Li N, Volff JN and Wizenmann A.
  TITLE     Rab23 GTPase is expressed asymmetrically in Hensen's node and plays
            a role in the dorsoventral patterning of the chick neural tube
  JOURNAL   Dev. Dyn. 236 (11), 2993-3006 (2007)
   PUBMED   17937392
  REMARK    GeneRIF: Rab23 plays an important role in patterning the
            dorso-ventral axis by dorsalizing the neural tube
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU176872.1.
            On Oct 23, 2007 this sequence version replaced gi:118088838.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU176872.1, BU404031.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201361, SAMEA2201363
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..714
                     /gene="RAB23"
                     /note="ras-related protein Rab-23"
                     /db_xref="CGNC:12171"
                     /db_xref="GeneID:421879"
     CDS             1..714
                     /gene="RAB23"
                     /note="RAB23, member RAS oncogene family"
                     /codon_start=1
                     /product="ras-related protein Rab-23"
                     /protein_id="NP_001103530.1"
                     /db_xref="CGNC:12171"
                     /db_xref="GeneID:421879"
                     /translation="MLEEDMEVAIKVVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV
                     DFLERQIQVNDEEVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFKAIPT
                     WKEKVTTEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRASVKEDLNVTE
                     VFKYLADKYLQRLKQQTAEEPELVHTSSNKIGVFNTAIGSHPNQNSNTLNGGDVINLR
                     PNKQRTKKSRSLFSNCSIP"
ORIGIN      
        1 atgttggaag aagacatgga ggtggccatc aaggtggtag tggtaggaaa tggagctgtt
       61 gggaagtcca gtatgattca gcgatactgc aaggggatct ttacaaaaga ctacaagaag
      121 actattggtg tagatttcct ggaaagacaa atccaagtta atgatgaaga agtcaggcta
      181 atgttatggg acactgcagg tcaagaggaa tttgatgcga taactaaggc ctactacaga
      241 ggagcccagg cttgtgttct tgtgttttct acaactgaca gagagtcctt caaagcaatc
      301 cctacctgga aggaaaaagt gacgactgaa gttggagaca ttcccacagt tcttgtgcag
      361 aataagatcg atcttttgga tgactcttgt ataaagaatg aagaggcaga agcactggca
      421 aaaaagctga aattaaggtt ctaccgagca tctgtgaagg aggacctcaa cgtcaccgaa
      481 gtttttaagt atttggctga taaatatctt caaaggctca agcagcaaac ggctgaagaa
      541 ccagaactag tacatacaag cagtaacaag attggtgttt tcaatacagc cattggaagt
      601 caccccaacc agaattccaa cactcttaac ggtggagacg tcatcaacct cagaccaaac
      661 aaacagagaa ccaagaaaag cagaagtctt tttagcaact gcagcatacc ttag
//

LOCUS       NM_001044640             774 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus ras-related protein Rab-6A (RAB6A), mRNA.
ACCESSION   NM_001044640 XM_417254
VERSION     NM_001044640.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ470138.1.
            On Aug 29, 2006 this sequence version replaced gi:50731390.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ470138.1, CR390639.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201368, SAMEA2201377
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
     gene            1..774
                     /gene="RAB6A"
                     /note="ras-related protein Rab-6A"
                     /db_xref="CGNC:50908"
                     /db_xref="GeneID:419063"
     CDS             16..642
                     /gene="RAB6A"
                     /note="RAB6A, member RAS oncogene family"
                     /codon_start=1
                     /product="ras-related protein Rab-6A"
                     /protein_id="NP_001038105.1"
                     /db_xref="CGNC:50908"
                     /db_xref="GeneID:419063"
                     /translation="MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA
                     TIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ
                     QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG
                     YNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPQEQPVSEGGCSC"
     misc_feature    19..21
                     /gene="RAB6A"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N-acetylserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (Q1KME6.3); acetylation site"
     misc_feature    139..165
                     /gene="RAB6A"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q1KME6.3);
                     Region: Effector region. {ECO:0000250}"
     misc_feature    637..639
                     /gene="RAB6A"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Cysteine methyl ester. {ECO:0000250}; propagated
                     from UniProtKB/Swiss-Prot (Q1KME6.3); methylation site"
ORIGIN      
        1 tcctctagtt ccacaatgtc ggcgggcggg gacttcggca acccgctgcg gaaattcaag
       61 ctggtgttcc tgggcgagca gagcgtgggg aagacttcct tgatcaccag gttcatgtat
      121 gacagctttg acaacaccta ccaggcaaca attggcattg acttcttatc aaaaaccatg
      181 tatttggagg atcgaacaat caggttgcag ctgtgggata ctgcgggtca ggaacgtttc
      241 cgtagcctca ttcccagtta catccgtgac tctgctgctg ctgtagtagt ttacgatatc
      301 acaaatgtca actcgttcca gcaaacaaca aaatggatcg acgatgtcag aacggaacgg
      361 ggcagcgatg tcatcattat gctggtggga aataaaacag atctagcaga taagaggcaa
      421 gtgtccattg aggaaggaga aagaaaagcc aaagagctga atgtaatgtt catcgaaact
      481 agtgcaaaag caggatacaa tgtaaaacag cttttccgac gcgtggcagc tgccttgcct
      541 ggaatggaaa gcacacaaga caaaagtaga gaagacatga ttgacatcaa actggaaaag
      601 cctcaagagc agcctgtcag tgaaggaggc tgctcctgct aataccacgt ggcttctgac
      661 ttcctccaga acatcactgc tttccctccc tttactcttc attgactgca gtgtgaatat
      721 tggcttgaac cttccccttt cagtaataac gtattgcagt tcatcatcgc tggc
//

LOCUS       NM_001030706            1661 bp    mRNA    linear   VRT 12-JAN-2017
DEFINITION  Gallus gallus proteasome 26S subunit, non-ATPase 12 (PSMD12), mRNA.
ACCESSION   NM_001030706 XM_415677
VERSION     NM_001030706.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ720947.1.
            On Aug 8, 2005 this sequence version replaced gi:50757850.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720947.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="18"
                     /map="18"
                     /breed="Leghorn"
     gene            1..1661
                     /gene="PSMD12"
                     /note="proteasome 26S subunit, non-ATPase 12"
                     /db_xref="CGNC:2706"
                     /db_xref="GeneID:417425"
     CDS             43..1413
                     /gene="PSMD12"
                     /note="proteasome (prosome, macropain) 26S subunit,
                     non-ATPase, 12"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 12"
                     /protein_id="NP_001025877.1"
                     /db_xref="CGNC:2706"
                     /db_xref="GeneID:417425"
                     /translation="MAEGGAERADGRIVKMEVDYSATVDQRLPECGRLAQEGRLQEVI
                     ENLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKDWDALNENIILLSKRRSQLKQAVA
                     KMVQQCCTYVEDITDLPVKLRLIDTLRTVTEGKIYVEIERARLTKTLATIKEQNGEVK
                     EAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN
                     TEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVIL
                     SPYDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWTALVEEYGKELREGSLD
                     SPATDVFGCTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEEF
                     LSNLVVNKTIFAKVDRLAGIINFQRPKGPNNILNDWSHKLNSLMALVNKTTHLIAKEE
                     MIHNLQ"
ORIGIN      
        1 ctggtgtgtg ttcgcggggg gacgcggagc ggagccgggg ccatggcgga gggcggcgcg
       61 gagcgggccg atggccgcat cgtgaaaatg gaggtggatt atagcgcgac ggtggaccag
      121 cggctgcccg agtgcgggcg actggcgcag gaggggagat tgcaagaagt aattgaaaac
      181 cttctctcct tggaaaaaca aacgcgaacg gcttctgaca tggtttccac atcgcgtatc
      241 ttagtggcta tagtgaagat gtgttatgaa gctaaagact gggatgctct gaatgaaaat
      301 attattcttc tgtcaaagag aagaagtcag ttaaaacagg cagttgctaa aatggtccag
      361 cagtgctgca cttacgttga agacatcaca gacttaccag tgaaactgcg cttaattgac
      421 acgttgcgta cagttacaga aggaaaaata tatgtggaaa tcgaacgtgc tcgcctgaca
      481 aagacacttg caacaataaa agaacagaat ggtgaagtga aagaggctgc ctctattctg
      541 caagaattgc aggtggaaac ttacggttca atggaaaaga aagaacgtgt agaatttatc
      601 cttgagcaga tgaggctctg tctagctgta aaagactaca ttcggactca aattatcagc
      661 aaaaaaatta atacaaaatt ttttcaagaa gaaaacacag aaaaactaaa attgaaatac
      721 tacaacctaa tgatccagct ggatcaacac gaaggctcct acctctccat ttgtaagcac
      781 tacagagcca tttatgatac tccatgtatt caagctgaga gtgaaaagtg gcagcaggca
      841 ctgaagagcg ttgttcttta tgttattctt tcaccttatg acaacgaaca atctgatttg
      901 gtgcacagaa ttagtagtga caaaaagcta gaagaaatcc cgaagtataa agacctccta
      961 aaattattta ccaccatgga gttgatgcga tggactgccc tagttgaaga atatgggaaa
     1021 gaattgagag aagggtccct cgacagtcct gcaacagatg tttttggctg tacagaggaa
     1081 ggtgaaaaga gatggaaaga tttaaagaac agagttgtgg aacataatat tagaataatg
     1141 gctaaatatt ataccagaat tacaatgaag agaatggcac agctcctgga tctgtccgtt
     1201 gatgaatcgg aggagttcct gtctaaccta gtagttaaca agaccatctt tgctaaagta
     1261 gacaggctgg caggaattat caatttccag aggcctaagg gtccaaacaa tatactgaat
     1321 gactggtctc acaagctgaa ctcactaatg gccctagtta acaaaaccac acatctcatt
     1381 gccaaagagg agatgataca taacctacag taaggtgcct caataatctc agtgctttta
     1441 aaggaaggca ttaaatcttc ataatagaga ctattattac agtgtgtata tgtttttttt
     1501 tctccccatc agggcttcct ggtctaaaat ttagaacata attctgaaat tcctgttgac
     1561 agttgagttc ccttgattat tcattcagtt gttaaacatt tttgctacaa ttggtgaaag
     1621 aacataataa aactgtattg cctgtaaaaa aaaaaaaaaa a
//

LOCUS       NM_001030974            3714 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus RNA binding motif protein 48 (RBM48), mRNA.
ACCESSION   NM_001030974 XM_418656
VERSION     NM_001030974.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3714)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ851572.1.
            On Aug 8, 2005 this sequence version replaced gi:50732482.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ851572.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Leghorn"
     gene            1..3714
                     /gene="RBM48"
                     /gene_synonym="C2H7ORF64; C7orf64; HSPC304"
                     /note="RNA binding motif protein 48"
                     /db_xref="CGNC:51284"
                     /db_xref="GeneID:420555"
     CDS             38..1090
                     /gene="RBM48"
                     /gene_synonym="C2H7ORF64; C7orf64; HSPC304"
                     /note="UPF0712 protein C7orf64"
                     /codon_start=1
                     /product="RNA-binding protein 48"
                     /protein_id="NP_001026145.1"
                     /db_xref="CGNC:51284"
                     /db_xref="GeneID:420555"
                     /translation="MAAGGGGALGEACRHHQQLGACGSRAKYREGRRPRAVKVYTINL
                     ESRYLLIQGVPALGVMKELVEQFALYGAIEEYHALDEYPAEQFTEVYLIKFQNLQCAR
                     VAKKKMDERSFFGSLLHVCYAPEFETVQETREKLQDRRKYIAKATNQRDCFLLKKTEG
                     PRKTKSDCQWSTSGSYAASHWDPSCFPDSHGVSQNTEYPSGNHSQNLLTFPHCDNHSA
                     ETSGNFGQSTSLKMHPGGCAAPVPLIQQRTGPADNGTDRFMPRTTQLQERKRKREEGN
                     KSALIETNVNSTDIIIGPQLPEIPKVDMDDDSLNTSATLIRNKLKEVAESVSSTSVEK
                     PGSSATKPLVKQRRRI"
ORIGIN      
        1 ggagctgcct gcgcggggag cggcggcggc cgggaagatg gcggcgggcg gtggcggcgc
       61 gctgggcgag gcgtgcagac accaccagca gctgggcgcc tgcgggtcgc gcgccaagta
      121 ccgcgagggg cggcggccca gggccgtcaa ggtgtatacc atcaacttgg aatctcgtta
      181 tttactgatc cagggggttc ctgcattagg tgtcatgaag gaattagtgg agcagtttgc
      241 cttatacggt gccatagaag agtaccacgc cctggatgaa tatcccgcag agcagttcac
      301 tgaagtttat ctcataaagt tccagaatct ccaatgtgcg agggtggcca agaaaaaaat
      361 ggatgaacgc agtttctttg ggagtttgct gcacgtgtgc tatgctccag aattcgaaac
      421 agtccaagaa accagggaga agctgcagga cagaaggaag tatatagcaa aagcaacaaa
      481 tcagagagac tgcttcctgt tgaagaaaac agaggggcct aggaagacca agtctgactg
      541 tcagtggagt acatcaggat cgtatgcagc tagtcactgg gatccatcct gctttccaga
      601 ttctcatggg gtgtcccaaa acacggaata tccttctggc aatcacagtc agaacctgtt
      661 gacttttccc cactgtgaca accacagtgc tgaaacttct gggaactttg gtcaaagcac
      721 atccctgaag atgcatccag gaggatgtgc tgcaccggtg cctttaattc agcaaagaac
      781 aggtccagct gataatggaa ctgacaggtt tatgcctcgt acaactcaac tgcaggaacg
      841 taagaggaag agagaagagg gtaacaaatc tgccctcatt gaaacaaatg tgaacagtac
      901 tgacatcatt attggtccac agctaccaga aatacctaaa gtggatatgg atgatgattc
      961 actgaatact tcagctacac tgattcgaaa taaactgaaa gaggtagcag agtcagtttc
     1021 aagtacatct gtggaaaagc caggcagcag tgccaccaag ccactagtaa agcagagaag
     1081 aagaatatag atactgctgg cagcatcctt ctgcagctct ttatagagga tataattaaa
     1141 aatacttaat gttgtttttt aaattaaaaa gaagtgtttt atattgcatt tccaagcaat
     1201 tccttgttaa aaactgtacc aggataaact aaaccagtat aatactgtag caattccttg
     1261 tcctgtgtat ttaaagagct gcaattaggt aaagtaataa aagtaaattc tatttattgc
     1321 atagctttta cagtaaagga atattgaaac ttaagatatc aattgttttg tgttgctttt
     1381 attcctaatg tcctctgagg aatgatgaag cattcttaga gcagtgttcc acttggagtt
     1441 acagttcacg cttttcctgg aaggtcctcc tttcaaatgc caaactgctc tgtgaaggag
     1501 aggaaaataa caagtttatt ctcagttaac tggaacgtct acatttagtt agttagaaaa
     1561 agagggcaaa ctggaatgtg taagtagcga aacaatgctt tgtagcacag aaaagctaaa
     1621 tccagtagca ttactgtcat caagaaactg atcacagttg taactgcact gggaaagctt
     1681 atgaattctg agcttccttc atttggtgct catagctgaa attattgatt tttgggattt
     1741 ggaagaatgt ataaatagag ttctttttaa gaatggaact agagacctag taaaaaggca
     1801 ccagttgggt agggtgcaga acagaataca cagataatgg aatcaagaaa ctggctcagc
     1861 ttcctacctg ttgccacaac tggctggaat tgtatccctg atttaccaca aactctgaca
     1921 aaaaacaaat catttttctg tgctgatcag tgaacgtaaa tgctgttaag aaactcttca
     1981 gaactttccc ttcatggaga aaaatagaag tactggccct gggtctctga aagcccactg
     2041 acagcctttt aaaatgtgac atcttgaaaa cagctgctat tcgggtgacc tgagataatc
     2101 cagactgcaa ccacagctat gagactcctt ccttctgtct tccagcctac caggaaggtg
     2161 agctggcatg aaatgtaggt tctgagcaaa taaatgcttg ccttgttttc aacaatctta
     2221 tggaactttt ctgtttctat gcattattgc atatatgtca gaatcttgtt tttccatctc
     2281 tatgagggca agaccgctgg cacttaaaaa tgaaatgcag ttcaaagagt ataatgatgg
     2341 atcagtgaaa aaattactat tacaaaggag acatctacac gtcagtttga tttaacgcta
     2401 aggaaattac tgcctcccaa atgaccatct ttcaggaaaa aaacctctct gaatcggatg
     2461 tactgctaat aaataaggct cagctggatg gaatttaaca acagtagcct aatacagtta
     2521 ttgtgagatg acacttctaa agtattttct ctgaaggtta ccggtctctc ccagaagaat
     2581 ggcagtggag ctggtggcac tgaagaaaga agaacaaaca ctgctttcct ggtgaagttt
     2641 cagataaact ctgcaagaga ctgatctcat tttttttagc cagggaggat gcttactgag
     2701 aatcatttat tgtattgctg ccccagcaca gacaagtggc acgacagtat gtttttatgc
     2761 tccctggtat cagtgtatga ctgtatcagg aaaggtgtac tgtgaaaggc agacatgaac
     2821 tcagaacatt tgtatcccac aactggaaca ccagcggaat tcagcaaact tcatacgaag
     2881 acagttaata ccataatatg aatgtatagt taaaaacagt acggagatag gtttttttaa
     2941 ctgaaggctg atgtaccttt acgtctggca aacatggtcc aaaggcttcc aagagaagat
     3001 tttcattttt gacagcttct tcaaagtccg caaaagaaag tttgccatca tggtcatagt
     3061 cctacacaag gagaagtctt tagcaaagac ctgcagcaat tgcctgttta tttaacagat
     3121 atttcattca tgtgcattta ttgattgatt gatagatttt acgcaaaaat cttccttggg
     3181 ccattagtct ccaaggtaag tagagtatgc ctctacttac agcataaaag atggaacaag
     3241 ctcaactatc tagtctagct ttgctaacag aattcctgat aaggcaaaat gttaacgtgg
     3301 gaagagctcg gactgagaac cctggggaca aatctcaaca atggctgcac aaggataaaa
     3361 gtagaagaaa atgttcagat gcattctgtc tatgtattta cattgtgagt atacctacat
     3421 ccatgaatta ctttatgcga gtggttttat tgtagacata cttctgccct gtctttttca
     3481 tgtgtagaca tagtagcaca tggagtatgc cactgccagc ctgcttctgg ctgtggaatg
     3541 ttcctctgta ggtggaaaag aagcatcctt gtgtttttag tatttctgta atttgaaaac
     3601 ctcctgtttc tacaagcata gcagcttaga gcaacaaatg ctacagtaag cacttcttta
     3661 atccttataa aggcattaag taaaagtaat aatttaagaa aaaaaaaaaa aaaa
//

LOCUS       NM_001031172            2851 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus VPS51, GARP complex subunit (VPS51), mRNA.
ACCESSION   NM_001031172 XM_420916
VERSION     NM_001031172.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2851)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ720609.1.
            On Aug 8, 2005 this sequence version replaced gi:50747587.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720609.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Leghorn"
     gene            1..2851
                     /gene="VPS51"
                     /gene_synonym="ANG2; ANG3; C11orf2; C11orf3; C5H11ORF2;
                     FFR"
                     /note="VPS51, GARP complex subunit"
                     /db_xref="CGNC:3056"
                     /db_xref="GeneID:422984"
     CDS             33..2396
                     /gene="VPS51"
                     /gene_synonym="ANG2; ANG3; C11orf2; C11orf3; C5H11ORF2;
                     FFR"
                     /note="protein fat-free homolog; another new gene 2
                     protein; vacuolar protein sorting 51 homolog; VPS51
                     vacuolar protein sorting 51 homolog"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 51
                     homolog"
                     /protein_id="NP_001026343.1"
                     /db_xref="CGNC:3056"
                     /db_xref="GeneID:422984"
                     /translation="MAEVEAAGSGTETGGGSESGNATGSGSGWRRPHGPLQRYYGPSA
                     AEAAEATPDPADINGPHFDPEVFLTKVRSECRLGELLSREATLGREIRALDSDMQTLL
                     YENYNKFISATDTIRKMKVDFRRMEAEMDDLASNMAAISASSARVSAALQDRHRRGAQ
                     LAGVQALLRKLQSLVEVPGRLRRWAAPGADPARALHCYARARAVLRHYRHLPSFRAIE
                     DESHSIMAELAQRLRARLRDDTLDPKELTECVEMLLQLEEPPEELCEEFLSQAGARLE
                     AELAALEAELPPSDPSGTASTPPPASDILDFVDRGSSAFVSNLCLLAASYRSLFEGRP
                     GSGDGRLEAFASTLTTRYFELLERRLALERGLGDTSLLVRALDRFHRRLRALLELLPA
                     AGAEAGAALVARAARERVARYLRALQTFFLGCLGDVRQALAAPRPPGKDGPGLPDLLA
                     TLSSSVLGQLKAVLAYVQLFTARDVAFASLPYFKGEFCVEAVREGLVVAFVRWLCRTA
                     RGFADSPAERGAPAAPPALLLLLARLCLDYEATTISYILTLTDEQFPPEDTGPAVTPG
                     PALCAEARGAAQRLLDHYVQVQGAAVAQMLRKSVETRDWLGTVEPRNVRAVMKRVVED
                     ITAIDVQVGQLFEEGVRRAQSSDSSRRAFSVYSSSRAPGRYAPSYTPSAPMDTHLLSN
                     IQKLFSERIDIFSPVEFNKVSVLTGIIKISLKTLLECVRLRTLGRFGLQQVQVDGHYL
                     QLYLWRFAADERVVQGLLDEVAASAAHRCLDPVPMEHSVVELICERG"
ORIGIN      
        1 aagctgtcag ctggaccgga agtgtcggcg tgatggcgga ggtggaagcg gcggggtcgg
       61 ggaccgagac tggcggcggc tccgagtctg ggaacgcaac agggagcggg agtgggtggc
      121 ggcgacccca cggtccgctc cagcggtatt atggaccgtc tgcggccgaa gcggcagagg
      181 caaccccgga ccctgctgat atcaacgggc cccacttcga cccggaagtt tttctcacca
      241 aggtgcgcag tgagtgtcgc ctgggggagt tgttgtcccg tgaagctacg ctggggcggg
      301 agatccgtgc tctcgacagt gatatgcaaa cgctgctcta tgagaactac aacaagttca
      361 tttctgccac agacactatc cgaaagatga aggttgactt ccggcgcatg gaggcagaga
      421 tggatgattt ggcctccaac atggcagcca tcagtgcctc cagtgcccgt gtcagtgctg
      481 cgctgcagga ccggcaccgc cgcggtgctc agctggctgg ggtgcaggcg ctgctgcgga
      541 aactgcaatc ccttgtggag gtgccagggc ggctgcggcg gtgggcagca ccaggagctg
      601 atcctgcacg ggccctgcac tgctacgccc gtgcccgtgc tgtgctgcgc cactaccgcc
      661 acctgccctc cttccgtgcc atcgaggatg agagccactc catcatggct gagctggccc
      721 agcgcctccg tgcacgcctc cgggatgaca ccttggaccc gaaggaactc actgagtgtg
      781 tggagatgct cctgcagctg gaggaaccac ccgaggagct gtgtgaggag ttcctgagcc
      841 aggctggtgc ccgccttgaa gccgagctgg cggcgctgga ggctgagctg cccccatctg
      901 acccctctgg cactgcttcc acgccacctc ctgcctccga catcctcgac tttgttgacc
      961 gcggcagctc agccttcgtg agcaacctgt gcctccttgc ggcctcgtac cgcagcctct
     1021 ttgaggggcg tcccgggtcc ggggatggcc gcctggaggc ctttgcctcc accctcacca
     1081 cccgctactt tgagctgctg gagcgacgcc tggccctgga gcggggtctg ggcgacacgt
     1141 cactgttggt gcgggcactc gaccgttttc accgccgcct ccgtgctctc cttgagctgc
     1201 tgcctgcggc tggggctgaa gcaggtgccg cactggtggc ccgagcagca cgtgaacggg
     1261 tggcccgcta cctgcgggcg ctgcagacct tctttctggg gtgcctgggt gatgtgcgcc
     1321 aggcactggc tgcaccccgt cctcctggca aggatggccc tggactgcct gacctcttgg
     1381 ccacgctctc ctcctccgtt cttggtcagc tcaaggctgt cctggcctac gtgcagctct
     1441 tcactgccag ggatgttgcc tttgccagct tgccctactt caagggggag ttctgtgtcg
     1501 aggcggtgcg tgaaggactg gtggtggcct tcgtgcgctg gctctgccgt actgctcggg
     1561 gctttgctga cagcccagct gagcgaggtg cccctgcagc acccccagca ctgctgctgc
     1621 tccttgcccg tctctgcctt gactacgaag ccaccaccat cagctacatc ctcactctta
     1681 ctgatgagca gttccctcct gaggacacag gaccagcggt gacgccaggg ccagcactgt
     1741 gtgctgaggc acggggagcg gcgcagcggc tgctcgacca ctacgtacag gtgcagggcg
     1801 ctgcggtggc acagatgctg cggaagagcg tggagacacg ggactggttg ggcaccgtgg
     1861 agccccgcaa tgtccgtgct gtcatgaagc gtgtggttga ggacatcact gccatcgatg
     1921 tccaggtggg gcagctcttt gaggagggag tgcggcgggc gcagagcagc gactcgagcc
     1981 gacgtgcctt ctctgtgtac agcagctcac gggcaccggg acgctatgcc cctagctaca
     2041 ctcccagtgc ccccatggac acccacctgc tcagcaacat ccagaagctc ttctccgaac
     2101 gcattgacat cttcagccct gttgagttca acaaggtgtc agtgctgaca gggatcatca
     2161 agatcagcct gaagacactg ctggagtgtg tgcggctgcg gacgctgggg cgctttgggc
     2221 tgcagcaggt gcaggtggac ggccactacc tacagctcta cctctggcgc tttgctgctg
     2281 acgagcgtgt ggtgcagggg ctgctggatg aggtggctgc cagtgctgcc caccgctgcc
     2341 ttgaccctgt ccctatggag cacagcgtcg tcgagctcat ctgtgagcgt gggtaggacc
     2401 tgagagcacc caggaaacac ctggggacat gggttgatgc acgggtgagg gggcacagga
     2461 gtcatctatg tgactgtaga gcacagcaga gctgggggca tatctgggag gggaatgtgt
     2521 cttggatcct gccacaagga caggctttta cctcgtgtat ttagggacac cccatgtttt
     2581 cccacacatg cagtgacgta tacagacata ccacaccctc acacctgtaa ggtcaccctg
     2641 tgttcccccc ccgcagcccc agtaacaccc cacagtctct cccctcccca gtgatgccaa
     2701 cccgatgttg tccctgcagc cctaacgaca tgccacatca ttccacttcc ttggtgacat
     2761 ccccctacac gtgggacatg ctgcacgtag cccatgtgtc acagttgagg acaataaata
     2821 aaatgcatgc aagttaaaaa aaaaaaaaaa a
//

LOCUS       NM_001031536            4463 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus trafficking protein particle complex 11 (TRAPPC11),
            mRNA.
ACCESSION   NM_001031536 XM_426304
VERSION     NM_001031536.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ720895.1.
            On Aug 8, 2005 this sequence version replaced gi:50746836.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720895.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
                     /breed="Leghorn"
     gene            1..4463
                     /gene="TRAPPC11"
                     /gene_synonym="C4H4ORF41; C4orf41; FOIGR; GRY; LGMD2S"
                     /note="trafficking protein particle complex 11"
                     /db_xref="CGNC:53450"
                     /db_xref="GeneID:428748"
     CDS             99..3497
                     /gene="TRAPPC11"
                     /gene_synonym="C4H4ORF41; C4orf41; FOIGR; GRY; LGMD2S"
                     /note="UPF0636 protein C4orf41; gryzun homolog; foie gras
                     homolog"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11"
                     /protein_id="NP_001026707.1"
                     /db_xref="CGNC:53450"
                     /db_xref="GeneID:428748"
                     /translation="MTPSQWDLPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRTKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
                     LCNACDLSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNMLEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQLASMLCNHDSSVVYPNPDPLETQTGVLDFY
                     GQRPWRQGTLSFDLSDPEKEKMGILSLQLKERNVLHSELIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYFAKDYAKALKLLDYVMCEYRSEGWWTLLTSILTTALKCSYLMAQ
                     IKDYITYSLELLGRASTLKDDQKSRIEKNLIKVLMNESPDPEPDCDAAAVKASQKLWS
                     DRVSLAGSNVFTIEVQDFIPFVQCKAKFLAPSFHVDVPVQFDIYLRADCPHPIRFSKL
                     CISFNNQDYNQYCVVEEAYQKSDILEQSSQGTMCLVPGKTRKFTFKFVAKTEDVGKKI
                     EITSVDLILGSESGRCVILNWRGGGGDAASSQEALQAARSFRRRPKLPDNEVHWDSLA
                     IQASTMIISRVPNISVQLRHEPPALTNEMYCLVVTIESHEETVAKDVKLTAGLKPGQD
                     ANLTQKTQVTLRGTDTCDDSFPALLPDIPVGDLQPGEKLEKPIYIRCGTVGARMFLVY
                     VSYLINTTVEGKEILCKCHRDETVTIETVFPFDVAIKFVSTKLEHLDRVFADIPFLLM
                     TDILSASPWPLTIVTSQLQLSASMTSVDQLESYVENVVLQTGESASECFCLRCPPVTN
                     SGGVATGCYIISWKRSSPVESVPVVSTVITLPHVIVESIPLHVKADLPSFGRVRESLP
                     VRYHLQNKTNLVQDVEVSMEPSDAFMFSGLKQIRLRILPGTQQEVLYNFYPLMAGYQQ
                     LPSLHINLLRFPNFTNQLLRRFIPTHIFVKPQGRQADENSIAAA"
ORIGIN      
        1 cccgccccgc ctcccgtgat cgtcgctggc gccggggctg ctgggccccc agctgctgct
       61 tcggcctccc gcttcggccg ggggccgcgg ggagcaggat gactccgagc cagtgggact
      121 tgccggtgga gctatgctgc cggcctatgg ccttcgtcac cctcaccggc ctggacgtgg
      181 tgtacaacgc cgtgcaccgg gccgtgtggg atgccttctg cgccaaccgg agggccgacc
      241 gcgtccccat ctccttcaaa gtgctgcccg gcgaccacga gtaccccaag tgccggacga
      301 agaggacctc ctacgagtgg tatattccaa aagggatcct aaagacgggt tggatgaaca
      361 aacacctgaa tttagttcct gcacttgtgg tggtgttcta tgaactggac tgggatgagc
      421 cacagtggaa agaaaagcag tcggaatgtg ccactcgggt tgaaattgtc aggcaaagtt
      481 tgcaaggaag aaatacaaaa gttgccgtgg tcttaattca gaagaaaact ccattacctc
      541 caggggaaga tgttattgca tcagagaggg cagcagcttt atgtaatgct tgtgaccttt
      601 ctggaaaatc cctctttgtg cttccacaca ctgatcatct cgttggctat attataaggt
      661 tggaaaacgc attctatgag catgcccaga cttactatta tacagaaata cgaagagtca
      721 aatctcataa ggaattcttg aacaaaacca ctcaccagct tctgtttgtt agacaccagt
      781 tcaaaatagc attcttcagt gagctgaaac aggatacaca gaatgctctc aaaaattaca
      841 ggactgcata taatctcgta catgaattaa gggctcatga aacaaacatg ctggaaatca
      901 agaccatggc aggatttata aactacaaga tctgtcgcct ctgttttcaa cacaatactc
      961 cactggatgc aattgctcag tttaggaagc acatagactt atgcaagaaa aagataggaa
     1021 gtgctgaact ggcttttgag catgctgcct ggatgtctaa acagtttcag gcttttggtg
     1081 acttgtttga tgaagcgatt aaactgggct tgacagcaat tcaaactcag aatccaggtt
     1141 tctactacca gcaagctgcc tactatgctc aggagcggaa acaactagca agtatgcttt
     1201 gtaaccatga ttcctctgtg gtatatccca acccggatcc cttggaaaca cagactggag
     1261 tgcttgactt ctatgggcag agaccatggc ggcagggaac attaagcttt gatctttctg
     1321 atcctgaaaa ggagaagatg gggattttat ccctccagct gaaagagaga aatgtccttc
     1381 actcagagct aataattacc ctgttgagta atgctgttgc gcagttcaag aaatacaaat
     1441 gtccaagaat gaaaagtcat ttgatggttc aaatgggtga agaatattac tttgctaaag
     1501 attacgccaa agctttgaag ctgttggact acgttatgtg tgaatatcgc agtgaaggat
     1561 ggtggactct tctcacttcc atactgacga cagctctcaa gtgttcatat ctgatggccc
     1621 agataaagga ttatataacg tactctttag aattattggg tagagcatct actcttaaag
     1681 atgatcagaa atctcgaata gaaaaaaatc tgataaaagt tctaatgaat gagagccctg
     1741 atcctgaacc tgattgtgat gctgctgcag tgaaagcatc acagaagttg tggtctgatc
     1801 gtgtttcttt ggcaggcagt aatgttttta caatagaggt ccaagatttc ataccatttg
     1861 tgcaatgcaa agcaaaattc cttgctccaa gttttcatgt tgatgtccct gtgcagtttg
     1921 atatttactt aagagctgat tgtcctcatc ctatcaggtt ttctaagctc tgcatcagtt
     1981 tcaataatca ggattacaac caatactgtg tggtagaaga agcctatcaa aaaagtgata
     2041 tcctagaaca gtcgtcacaa ggaacgatgt gcttagtccc tggtaaaaca cggaagttca
     2101 cgttcaaatt cgttgcaaaa actgaagatg taggaaagaa gattgagatc acctctgtgg
     2161 atttgatctt gggtagcgaa tctggccgat gtgtgattct gaattggcgt ggaggaggtg
     2221 gagatgctgc ttcgtctcaa gaagcactgc aggcagcacg ttccttcagg cggagaccca
     2281 agcttccgga taatgaagtt cattgggaca gtttggctat tcaagcaagc actatgatta
     2341 tttctagggt gccaaacatt tctgttcagc ttcgtcatga acctcctgcc ctgactaatg
     2401 aaatgtactg tttggttgtg actatcgagt cacatgagga gacagtggcc aaagatgtta
     2461 agcttactgc aggtttaaag ccagggcaag atgccaactt gactcagaaa actcaagtaa
     2521 ctcttcgagg aacagataca tgcgatgact cctttcccgc attgcttcct gatatccctg
     2581 taggagatct gcaaccaggg gaaaagctgg aaaaaccaat atacattcgt tgtggaacag
     2641 ttggtgcaag gatgtttctt gtctatgtct cttacttgat caacacgact gttgaaggga
     2701 aagaaatcct ctgcaaatgc caccgggatg aaactgtaac tatagaaaca gtatttcctt
     2761 ttgatgttgc catcaaattt gtttccacaa agctggagca cttggacaga gtttttgcag
     2821 atataccatt tttactgatg acagacatcc tgagtgcttc tccttggccc ctcactattg
     2881 taaccagcca gctacagctg tcagcttcca tgacctcggt agatcagctg gaatcttatg
     2941 tggaaaatgt tgttttacag acaggtgaga gtgccagtga gtgcttttgc ctgcgatgtc
     3001 ctccagttac taatagtggt ggagtggcaa ctggatgtta tatcatttcc tggaagagaa
     3061 gttcacctgt ggaaagtgta cctgttgtta gtacagtcat cactctgcca catgtgattg
     3121 tagagagcat tcccctccat gttaaagcag atctgccatc atttggtcga gttcgagaat
     3181 ccctccctgt cagatatcac ctgcaaaata agaccaattt agtccaggat gtagaggtgt
     3241 caatggaacc cagcgacgca ttcatgttct ctggccttaa gcagatccgg ttaagaatcc
     3301 ttcctggcac gcagcaggaa gtattatata acttctatcc tctgatggct ggatatcaac
     3361 agttaccatc tcttcatatt aacttgctgc gattcccaaa cttcactaat cagctgctca
     3421 gacgattcat acctacacac atctttgtga agcctcaggg tcgtcaagca gatgaaaact
     3481 caattgcagc tgcgtaactc caagacttgc acctctgcac ttaaagaaga tgggaagttg
     3541 cacagaatac ataatgtttg ctttggaaac atggctttga tcaaaccata agaattattt
     3601 gtttttaatt acatctctta acagaactaa tgtttaaaaa aaaaaaagtc tttcatagac
     3661 cctccttaag gaggaaacat ggggaaaagt tggtgcttta tgtaacagga acattatttt
     3721 gaaggtaacg ctgaatgtca aactcttaaa agtattactt tataggcata ttaaatgtct
     3781 tgagtgctta agtgaagaaa tgcaaatatg ttttaccaaa actaaaagac gttttcataa
     3841 ttaacagtaa gttgaagtgc taggtttgca ctttacaaca ctgaaaatga ttatccttta
     3901 caaaaacgtg ttctgtgcca cttgtgtgga gggcaaagca agctgtgtag tagcatagga
     3961 ggctacaagt gatgaacttg tgctgttggg atcaagtggc ttactagttg tttaaaaggg
     4021 taaatctgaa agacgcttct tctgggtaag ccatacatct ggatttgagt tcagcatctg
     4081 gtctaatgaa cagagagatt cattcataac aggtggactg tccaacctca actcgatgtg
     4141 gctttgaatt acttttgcac gcacagcttc ccgattgagg aggtcttgat gacatgcccc
     4201 ctgctgtgtc agtaaaaaga aagacatcct actgttgtac agctacagat gaactggtgt
     4261 ttaaaataca ataaatcctg tacatattta aaaagaacga acaacgaaca ttgtgaaaac
     4321 ttcagttgtt taactttcta aataatgaca ttttgcttgg agaatatctt atttattgtc
     4381 aaagtgaagt tctaataaat agcttgtaac agtgcttctg aaaaaaaaaa aaaaaaaaaa
     4441 aaaaaaataa aaaaaaaaaa aaa
//

LOCUS       NM_001012804            4592 bp    mRNA    linear   VRT 12-JAN-2017
DEFINITION  Gallus gallus protein kinase C alpha (PRKCA), mRNA.
ACCESSION   NM_001012804 XM_415682
VERSION     NM_001012804.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4592)
  AUTHORS   Guo D, Standley C, Bellve K, Fogarty K and Bao ZZ.
  TITLE     Protein kinase Calpha and integrin-linked kinase mediate the
            negative axon guidance effects of Sonic hedgehog
  JOURNAL   Mol. Cell. Neurosci. 50 (1), 82-92 (2012)
   PUBMED   22521536
  REMARK    GeneRIF: PKCalpha directly phosphorylates integrin-linked kinase on
            threonine-173 and -181 in vitro.  Dominant negative PKCalpha
            disrupts RGC axon pathfinding at the optic chiasm.
REFERENCE   2  (bases 1 to 4592)
  AUTHORS   Tunsophon S and Nemere I.
  TITLE     Protein kinase C isotypes in signal transduction for the
            1,25D3-MARRS receptor (ERp57/PDIA3) in steroid hormone-stimulated
            phosphate uptake
  JOURNAL   Steroids 75 (4-5), 307-313 (2010)
   PUBMED   20079367
  REMARK    GeneRIF: PKCalpha and PKCbeta are both involved in
            steroid-stimulated phosphate uptake.
REFERENCE   3  (bases 1 to 4592)
  AUTHORS   Suh HN, Lee YJ and Han HJ.
  TITLE     Interleukin-6 promotes 2-deoxyglucose uptake through p44/42 MAPKs
            activation via Ca2+/PKC and EGF receptor in primary cultured
            chicken hepatocytes
  JOURNAL   J. Cell. Physiol. 218 (3), 643-652 (2009)
   PUBMED   19006119
  REMARK    GeneRIF: IL-6 stimulates the 2-deoxyglucose uptake through p44/42
            MAPKs activation via Ca(2+)/PKC and EGF receptor in primary
            cultured chicken hepatocytes.
REFERENCE   4  (bases 1 to 4592)
  AUTHORS   Lee SH, Lee MY, Lee JH and Han HJ.
  TITLE     A potential mechanism for short time exposure to hypoxia-induced
            DNA synthesis in primary cultured chicken hepatocytes: Correlation
            between Ca(2+)/PKC/MAPKs and PI3K/Akt/mTOR
  JOURNAL   J. Cell. Biochem. 104 (5), 1598-1611 (2008)
   PUBMED   18646054
  REMARK    GeneRIF: Short time exposure to hypoxia increases DNA synthesis in
            primary cultured chicken hepatocytes through cooperation of
            Ca2+/PKC, p38 MAPK, p44/42 MAPKs, and PI3K/Akt pathways.
REFERENCE   5  (bases 1 to 4592)
  AUTHORS   Pan JQ, Tan X, Li JC, Sun WD, Huang GQ and Wang XL.
  TITLE     Reduced PKCalpha expression in pulmonary arterioles of broiler
            chickens is associated with early feed restriction
  JOURNAL   Res. Vet. Sci. 84 (3), 434-439 (2008)
   PUBMED   17707446
  REMARK    GeneRIF: Early time feed restriction inhibits pulmonary vascular
            remodeling in broilers, which may be partly attributed to reduced
            PKCalpha expression in pulmonary arterioles.
REFERENCE   6  (bases 1 to 4592)
  AUTHORS   Suh HN, Lee SH, Lee MY, Lee YJ, Lee JH and Han HJ.
  TITLE     Role of interleukin-6 in the control of DNA synthesis of
            hepatocytes: involvement of PKC, p44/42 MAPKs, and PPARdelta
  JOURNAL   Cell. Physiol. Biochem. 22 (5-6), 673-684 (2008)
   PUBMED   19088449
  REMARK    GeneRIF: IL-6 stimulates the proliferation of primary cultured
            chicken hepatocytes through PKC, p44/42 MAPKs, and PPARdelta
            pathways.
REFERENCE   7  (bases 1 to 4592)
  AUTHORS   Lee YA, Kang SS, Baek SH, Jung JC, Jin EJ, Tak EN and Sonn JK.
  TITLE     Redifferentiation of dedifferentiated chondrocytes on chitosan
            membranes and involvement of PKCalpha and P38 MAP kinase
  JOURNAL   Mol. Cells 24 (1), 9-15 (2007)
   PUBMED   17846494
  REMARK    GeneRIF: p38 MAP kinase activities are required for chondrocyte
            redifferentiation in a model system of dedifferentiated
            chondrocytes
            GeneRIF: PKC and p38 MAP kinase activities are required for
            chondrocyte redifferentiation in a model system of dedifferentiated
            chondrocytes.
REFERENCE   8  (bases 1 to 4592)
  AUTHORS   Wang W and Kirsch T.
  TITLE     Annexin V/beta5 integrin interactions regulate apoptosis of growth
            plate chondrocytes
  JOURNAL   J. Biol. Chem. 281 (41), 30848-30856 (2006)
   PUBMED   16914549
  REMARK    GeneRIF: binding of annexin V to active PKCalpha stimulates
            apoptotic events in growth plate chondrocytes and binding of
            annexin V to beta5 integrin controls these interactions and
            ultimately apoptosis
REFERENCE   9  (bases 1 to 4592)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   10 (bases 1 to 4592)
  AUTHORS   Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N and Klein
            J.
  TITLE     The phylogenetic relationship of tetrapod, coelacanth, and lungfish
            revealed by the sequences of forty-four nuclear genes
  JOURNAL   Mol. Biol. Evol. 21 (8), 1512-1524 (2004)
   PUBMED   15128875
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ851529.1.
            On Mar 14, 2005 this sequence version replaced gi:50757860.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ851529.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..4592
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="18"
                     /map="18"
                     /breed="Leghorn"
     gene            1..4592
                     /gene="PRKCA"
                     /note="protein kinase C alpha"
                     /db_xref="CGNC:50506"
                     /db_xref="GeneID:417430"
     CDS             68..2092
                     /gene="PRKCA"
                     /EC_number="2.7.11.1"
                     /codon_start=1
                     /product="protein kinase C alpha type"
                     /protein_id="NP_001012822.1"
                     /db_xref="CGNC:50506"
                     /db_xref="GeneID:417430"
                     /translation="MADVFPGSEPGAAPDAARRFARKGALRQKNVHEVKEHKFIARFF
                     KQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKH
                     KFKIHTYGSPTFCDHCGSLLYGLLHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRG
                     RIYLKAEVTGDKLEVTVREAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTFRST
                     LNPHWNESFTFKLKPTDKDRRLSVEVWDWDRTTRNDFMGSLSFGVSELMKMPASGWYK
                     LLNQEEGEYYNVPIPDADEDGNAELRQKFEKAKLGPAGNKVITPSEDRNSSVPSNNLD
                     RVKLTDFNFLMVLGKGSFGKVMLADRKNTEELYAIKILKKDVVIQDDDVECTMVEKRV
                     LALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEIS
                     VGLFFLHNRGIVYRDLKLDNVMLDSEGHIKIADFGMCKEHMLDGVTTRTFCGTPDYIA
                     PEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKE
                     AVSICKGLMTKHPAKRLGCGLEGERDIREHAFFRRIDWEKLENREIQPPFKPKVCGKG
                     AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQFVHPLLENVA"
ORIGIN      
        1 ggttcggcgg ccgccggacg gttgcgtgac gaggcgggca gatccttctg gatacgagcg
       61 gagagccatg gccgacgtgt tcccgggctc cgagcccggc gcggccccgg acgcggcgcg
      121 gcgctttgct cgcaaagggg ccctgaggca gaagaacgtg cacgaggtga aggagcacaa
      181 attcatcgcg cgcttcttca agcagcccac cttctgcagc cactgcaccg acttcatctg
      241 gggatttggg aaacaaggat ttcagtgcca agtttgctgt tttgtggttc ataagagatg
      301 ccatgagttc gttaccttct cctgtcctgg agctgacaag ggacctgaca ccgatgaccc
      361 caggagcaag cacaaattta agatccacac ctatgggagc ccaaccttct gtgaccactg
      421 tgggtccctt ctttatgggc tcctacacca agggatgaaa tgtgacactt gtgatatgaa
      481 tgtgcataag caatgtgtga taaacgtccc gagcctctgt ggcatggatc acactgagaa
      541 aaggggaagg atttatctga aggctgaagt cactggtgac aaactggaag taacagtgcg
      601 agaagcaaaa aacctaattc ccatggatcc aaatgggctt tcagatcctt atgttaaact
      661 gaaacttatc ccagatccca agaatgaaag taaacaaaaa acaaaaacct tccgttctac
      721 cctgaatcca cactggaatg agtcattcac atttaaatta aaacctacag acaaagatcg
      781 acggctctct gtagaggtct gggactggga tcgaacaacc aggaatgatt ttatgggctc
      841 tctttcattt ggggtgtcag agctcatgaa gatgccagcc agtggatggt acaagctgct
      901 gaatcaagaa gaaggtgaat attataatgt tccaattcca gatgctgacg aggatggaaa
      961 tgcagagctc cggcagaagt tcgagaaagc caaacttggg ccagctggta acaaagtcat
     1021 tactccatca gaagacagga attcaagtgt gccatccaac aatctggaca gggtgaaact
     1081 gacagatttc aactttctta tggttcttgg aaaaggaagc tttggaaagg tgatgctggc
     1141 ggacaggaag aatacagagg agctctatgc aatcaaaata ctgaaaaaag atgtggtgat
     1201 tcaggatgat gatgttgagt gtacaatggt tgaaaaacga gtgctagcac tgcaggataa
     1261 accaccattc ctgacacagc ttcactcatg tttccaaaca gttgaccgcc tgtattttgt
     1321 tatggagtat gtgaatggtg gggatctcat gtaccacatt cagcaagtag gaaaatttaa
     1381 ggagccacaa gcagtgttct atgcagctga gatctcagtt gggttattct ttctccataa
     1441 tagagggatt gtttatagag atctgaaatt ggataatgtg atgttggatt cagaaggaca
     1501 cattaaaatt gctgactttg gaatgtgcaa agaacatatg ttagatggag taacaaccag
     1561 gaccttctgt ggcaccccag attacatcgc accggagatc attgcttatc agccctatgg
     1621 gaagtctgtg gattggtggg catatggagt gctgctctac gagatgttag ctggccagcc
     1681 tccatttgat ggagaagatg aagatgaact tttccagtcc ataatggaac ataatgtttc
     1741 ctatccaaaa tcgctgtcca aagaagctgt ctccatctgc aaggggctaa tgactaaaca
     1801 tcccgcaaag cgccttggct gcggcctcga aggtgaaaga gacatcaggg aacacgcttt
     1861 cttcaggaga attgactggg agaaactgga aaacagagag atccagccac ctttcaagcc
     1921 caaagtgtgt ggcaaaggtg ctgaaaactt cgataaattc ttcacgcgag gacagccggt
     1981 gttgaccccg ccagaccagc tggtcattgc taacatagat caatccgatt ttgaagggtt
     2041 ctcctatgtc aacccccagt ttgtacatcc cctcctagaa aatgtagcat gaaacagcag
     2101 aacaggaaca aatcccgcag tggggaacgg ttcttaaccc taaaattttt aggtttttgc
     2161 cttgattccg tttgggcctg aaaattatag ggttagaaag tgtaagatgg gagaaaggcc
     2221 acttagtgag gattttgact ttgcaaccaa aacgtcttaa tgggagataa attagcatac
     2281 agtgcccatt tctcctacta gaagtcacca tgactcgtct gaagttcccc atttttggta
     2341 cattctgtag ttctgtagct ccccgctgtc cttttgctcc gtttttcact ccgctgctgt
     2401 tacaaataat ccaagacccg acctgagaag cacctccagt actcagtcct tgcaggggac
     2461 cagctccccg ctcctatggg caccatgggg agagcagcgc acgggactgg agagcgccgg
     2521 ggaggagagg cattgcagaa tgtggtggaa agcagttgtt accaaaaccc gacaaataaa
     2581 tacgagttgg gagtgggagg gcagggggga tgaaatccta ttagagccca aagcttcgtg
     2641 aaccaatcct gtaagcaaca ccaaatttaa acacgctccg gcagtggcca gatctctaga
     2701 tctttgctaa gtagcatgtg ataaactcga gggtgaagtt ttgtctttaa taataataat
     2761 aatagtaata attttaataa tatttttgtg aattttaatc tccgtgagat tattctgtga
     2821 tccagggtgc cattgtttgt tcagttgatt tcatttgcac cactcctcaa gctcactgtt
     2881 gactggttct aataacacca acgttttact atgagatttg ttaacctgga atgtaaaaca
     2941 gaactgtaat cccttacatc ttatttactt gtgtgtgttg tagtctgcag tatagggcag
     3001 taaattgaag gaagtattgt gtatgctaaa ttaacaaaaa cgcagtccca ggtgactccc
     3061 tgatttttcc agaacaactc atgaaaatga attgagattt agttctacag taatcaattc
     3121 taactcagaa aacttggggc tgtacaataa ccaagcttga aagaagcacc tgaagcttgt
     3181 tttattggca gaatggaatt taacacattt tacatacgct tcatgcaatg aattttgcat
     3241 gtttagtaat aactcttaat aataagagtt aataataagc agttctatat tgacattacc
     3301 atatcaagca tacagagtat tacaaaagtt ttataaaaca aattgtgctt tatttgtgga
     3361 agtacttgtt ctgaacgaca tcatttaggt ttagctcaat gttttcttgc tgttgttttg
     3421 ggttgttttt ttctagtttt tggatattgt taatgactta gggtatcatc tgttttttta
     3481 aacgtagatc tacttttaaa caataattgc tacctgcagg ttttatacaa gtttcaatta
     3541 ggcttttgtt tcatgtctgc tgattactga cagggaaaga aatagatttt atttgcaatg
     3601 atgaacgctg taattaatgc aatcttctcc tctcctatct cacttagata caaattttga
     3661 tatttcctct taccaactta ccagaagatc ttaattcaaa tatcagtaaa tatttttgtg
     3721 cttactttgg ttttgttaca gcatgtaaaa tagtaggcgg tgcgttttcc ttttcttccc
     3781 ttcagcctcg ttaatggtag cagccatagg cactctttgt ctgtcggatg tgcatgatga
     3841 tgccagaagc atgatgtctc tgttgctgca tgcagactga atacagtttt tccagcatgt
     3901 aaacatattc aaaaagtcag atatttgcca taaaagactt acatttatac tagaatatgt
     3961 aaccggaggg tgggggtggg agcggggggg gaggaatcta ctttctaatc atcttttatt
     4021 acaataaaac attgagcctg tgccaaagat tctgctagaa agatccagtc ctgcagattg
     4081 gacggcgatg atgtgcagga gtgaccccgt ggcacatggg acagttggtg agcgaaccgc
     4141 agctggatgt gagcagaagc ggccgtgcgg tgctcctgca ccacggatgc cttccaaagc
     4201 cgtcctttgg cgcctgggat ttgcagcact ccagttgtgt gaccagccct gcttcctttg
     4261 tggtcacagc cctaaggttg gagcatcccc agagagggct cagcccgtgt tggatggacc
     4321 cggcgctgac acatggcatc ccccaacgaa cagctcccca gattgttgcc taaataaaca
     4381 gaactcaaac attttaatac attttaggag tacagttttt caactatccg gtgtcagata
     4441 tgttatcagc caaatttggg cattcgtttt cctctttgtg tattatatac ctgaagatta
     4501 tggtatgttg ttccccataa agcatgtgga ctagtgcagc aaaaaaaaaa aaaaaaaaaa
     4561 aaaaaaaaaa aaaaacaaaa aaaaaaaaaa aa
//

LOCUS       NM_001006355            1767 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus ras-related protein Rab-18-B (RAB18), mRNA.
ACCESSION   NM_001006355 XM_418585
VERSION     NM_001006355.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1767)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ719773.1.
            On Jan 13, 2005 this sequence version replaced gi:50732330.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ719773.1, AJ455751.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201366, SAMN03354473
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1767
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Leghorn"
     gene            1..1767
                     /gene="RAB18"
                     /note="ras-related protein Rab-18-B"
                     /db_xref="CGNC:5610"
                     /db_xref="GeneID:420483"
     CDS             64..684
                     /gene="RAB18"
                     /note="RAB18, member RAS oncogene family"
                     /codon_start=1
                     /product="ras-related protein Rab-18"
                     /protein_id="NP_001006355.1"
                     /db_xref="CGNC:5610"
                     /db_xref="GeneID:420483"
                     /translation="MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD
                     FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW
                     LNELETYCTRNDIVKMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC
                     AFEELVEKIIQTPGLWESESQNKGVKLSNKEEGHGGGACGGYCSML"
     mat_peptide     64..672
                     /gene="RAB18"
                     /product="Ras-related protein Rab-18"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZLG1.1)"
     misc_feature    172..198
                     /gene="RAB18"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZLG1.1);
                     Region: Effector region. {ECO:0000250}"
     misc_feature    670..672
                     /gene="RAB18"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Cysteine methyl ester. {ECO:0000255}; propagated
                     from UniProtKB/Swiss-Prot (Q5ZLG1.1); methylation site"
ORIGIN      
        1 gccgcagcct gtgtagggag cgtctgtcgg tcggggccgg gcagggccgg gcgcgccgac
       61 gggatggacg aggacgtgtt gaccacgctg aagattctca ttatcggcga gagcggcgtc
      121 ggcaagtcca gccttctgct gcgattcaca gatgatacat ttgacccaga acttgcagca
      181 acaattggtg tagacttcaa ggtgaaaact atttcagttg atggaaacaa agctaaacta
      241 gcaatatggg atactgcggg tcaggagcgg ttcagaacac taacacccag ttactacaga
      301 ggtgcacagg gtgttattct ggtttatgat gttacaagaa gagatacttt tgtcaagctg
      361 gataactggt taaatgaact ggaaacgtac tgcacaagga atgacatagt gaaaatgctt
      421 gttggaaaca agattgataa ggaaaaccgt gaagttgaca gaaacgaagg tctcaaattt
      481 gcaagaaaac attccatgtt gttcatagag gcaagtgcaa aaacctgcga cggtgtacag
      541 tgtgcctttg aagaacttgt ggaaaaaatc attcagactc ctggactgtg ggagagtgag
      601 agccaaaaca aaggtgtaaa attatcaaac aaggaagaag gacatggagg aggcgcatgt
      661 ggtggatatt gttctatgtt ataaactttg ggaggcttat tctttgcata tttaaacaga
      721 tagtgacatc tttctgtaaa taaatccatt aaatgctatt tttagggacc ttgcagtttg
      781 cacatacttg ttttgtatca tggcagtgaa cacttgtagg aaaaatgttc tgcagctttc
      841 ccagtttgag aatgttatgg taagcatgcc caatttgcca tcttcaggtt tttataaagt
      901 agcataaata atgtgcagga acaaatgcac taaaagtttt atgactgtat acatccatca
      961 tgtaagtatt ctaaacaaat ccatctaaca catgcacatt actacattgt ttgctttctg
     1021 tctcattttt aaatactctt gaaattacag aactacgtag tgcacacaga ccttgaaaac
     1081 agcgtaagct ataaatgtta catttcatct cttctagtag atgctttttt gatattaaaa
     1141 acaacgtgat tatacagttc ttagataaat gctgaatttt aatttcagct gagctgtcaa
     1201 aaatacaaat tggcataggc cataattgat atcagcacct tctggaagag atgccgtgaa
     1261 agcttccttt gcaaagctga gggatgccct tttttctttt taatcatcac ttcagttgat
     1321 ggcttaactg gagttttaat cctgtgatat ttatatacta aatttgtggt actcttgcac
     1381 tctaggtttt tatgatgcag tttactctag gtctgctgta gaaagtcttc atttttggca
     1441 aggagtctaa atgacatctt tgttctttca ttgtgaatca gcttgccact cttcagtaca
     1501 gatgcctcat tttcttaaat gtttataact atctcaaact gtagctcact atggctgtga
     1561 agatctgtat tatgtctgct ttgtgtggct acctgtttgg aaatataact tcctatcaca
     1621 gacactaaat gggaagctcc ggggctactg tatggaaaat actacaatga gtattcactt
     1681 gaattaactg tatcaaagcc aatggtttgt ttcagaagac ttgtatagac taataaattt
     1741 tttttccaca gtaaaaaaaa aaaaaaa
//

LOCUS       NM_204172               1574 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus limb development membrane protein 1 (LMBR1), mRNA.
ACCESSION   NM_204172
VERSION     NM_204172.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1574)
  AUTHORS   Huang Y, Chen W, Li N, Deng X, Kang X and Liu X.
  TITLE     Identification of an alternative splicing isoform of chicken Lmbr1
  JOURNAL   Mol. Biol. Rep. 38 (7), 4397-4403 (2011)
   PUBMED   21161408
  REMARK    GeneRIF: Chicken Lmbr1 was alternatively spliced to generate
            multiple splice forms.
REFERENCE   2  (bases 1 to 1574)
  AUTHORS   Huang Y, Du X, Deng X, Qiu X, Wang C, Chen W, Li N and Wu C.
  TITLE     Single nucleotide polymorphisms in chicken lmbr1 gene were
            associated with chicken growth and carcass traits
  JOURNAL   Sci. China, C, Life Sci. 50 (1), 62-69 (2007)
   PUBMED   17393084
  REMARK    GeneRIF: Lmbr1 gene could be a genetic locus or linked to a major
            gene significantly affecting growth and carcass traits in chickens.
REFERENCE   3  (bases 1 to 1574)
  AUTHORS   Huang YQ, Deng XM, Du ZQ, Qiu X, Du X, Chen W, Morisson M, Leroux
            S, Ponce de Leon FA, Da Y and Li N.
  TITLE     Single nucleotide polymorphisms in the chicken Lmbr1 gene are
            associated with chicken polydactyly
  JOURNAL   Gene 374, 10-18 (2006)
   PUBMED   16650944
REFERENCE   4  (bases 1 to 1574)
  AUTHORS   Maas SA and Fallon JF.
  TITLE     Isolation of the chicken Lmbr1 coding sequence and characterization
            of its role during chick limb development
  JOURNAL   Dev. Dyn. 229 (3), 520-528 (2004)
   PUBMED   14991708
  REMARK    GeneRIF: Lmbr1 is not required for normal chick limb development
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB105057.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            22 bp suspected to be vector contamination from the 3' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB105057.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1574              AB105057.1         1-1574
FEATURES             Location/Qualifiers
     source          1..1574
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..1574
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /note="limb development membrane protein 1"
                     /db_xref="CGNC:48990"
                     /db_xref="GeneID:373986"
     misc_feature    59..61
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /note="upstream in-frame stop codon"
     CDS             65..1531
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /note="limb region 1 homolog; differentiation-related gene
                     14 protein"
                     /codon_start=1
                     /product="limb region 1 protein homolog"
                     /protein_id="NP_989503.1"
                     /db_xref="CGNC:48990"
                     /db_xref="GeneID:373986"
                     /translation="MEADEVSIREQNFHSQVREYTICFLLFAVLYIVSYFIITRYKRK
                     ADEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGS
                     LIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLILLALLI
                     LGIVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTV
                     MGQLLVKPTILEDLDEQMYIITLEEEAIQRKLNGISSTLENQTVELERELEKVKCKKT
                     NLERRKKASAWERNLVYPAVMILLLIETSISVLLVAFNILYLLVDETAMPKGSGGPGI
                     GNASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFENFIPRKDDTTMTKIIGNCVS
                     ILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCLVRKFT
                     SAVREELLKALGLDKLHLSNNPRDSETKPSANGHQKTL"
     misc_feature    119..181
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    248..310
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    392..454
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    515..577
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    623..685
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    950..1012
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    1079..1141
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    1211..1273
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
     misc_feature    1340..1402
                     /gene="LMBR1"
                     /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
                     ZRS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
                     transmembrane region"
ORIGIN      
        1 acgcggggag caggcgcggc ggcggcggcc gccattgcgc gcgggggccg cgggactatg
       61 aaggatggag gcggacgagg tgtcgatccg cgagcagaac ttccacagcc aagtgcggga
      121 gtacacgatc tgttttctcc tatttgctgt tctctacata gtgtcctact tcataatcac
      181 aagatacaaa agaaaagcag atgagcaaga ggatgaagat gccatagtta acagaatatc
      241 gctgttcttg agcaccttca ctctagcagt ttcagctggt gcagtcctgc ttctgccttt
      301 ctcaataatc agcaatgaga tcctgctttc ttttccacaa aactactata ttcagtggtt
      361 aaatggctca ctaattcatg gtttatggaa tcttgcttct cttttttcca atttatgttt
      421 gtttgtgttg atgccctttg cctttttctt cttggagtcg gaaggatttg ctggcttaaa
      481 aaaggggatc agagcacgca ttctggagac ccttgtaatg ctcatacttc ttgcactgct
      541 tatccttgga atcgtatggg tggcttcagc tctcatagac aatgatgctg ccagtatgga
      601 gtctttgtac gacctctggg aattctacct cccatattta tattcctgta tatcactgat
      661 gggatgcttg ttacttctgt tatgcacgcc agtgggactt tcacggatgt ttacagtaat
      721 gggtcagttg ctggtgaagc caacaattct tgaggaccta gatgagcaga tgtatatcat
      781 cactttagag gaagaagcaa ttcagaggaa gcttaatggg atatcttcca cattggaaaa
      841 ccagacagtg gagttggaac gggagcttga aaaagtgaag tgcaagaaaa caaatctaga
      901 acgtcggaaa aaagcttctg cttgggagag gaatttagtg tatccagctg ttatgatatt
      961 gctactgatt gagacatcca tctcagtcct attagttgct ttcaacatcc tttacctgtt
     1021 ggttgatgag actgcaatgc caaaaggatc agggggacct ggaataggaa atgcatccct
     1081 atccaccttt ggttttgtgg gagcagcact tgaaatcatt ttgattttct atctcatggt
     1141 atcctctgtc gtcggcttct acagccttcg tttttttgaa aatttcattc ccaggaagga
     1201 tgatacaact atgacaaaga taattggaaa ctgtgtctca atcttggtgc tgagctcggc
     1261 tttgccagtg atgtcaagga cactgggaat tactcgattt gatctgcttg gagacttcgg
     1321 aaggtttaac tggctgggaa acttctatat tgtattatct tacaacttgc tctttgctat
     1381 catgacaaca ttgtgtctgg tcagaaagtt cacttctgct gtgcgagaag agctcctgaa
     1441 ggcattagga ttagataaac ttcatctgtc gaacaatcca agagactcag agacaaagcc
     1501 gtctgcaaat gggcatcaga aaacactgtg attgacaatc acctgcaatc aacagagctg
     1561 aaaacatcaa cctc
//

LOCUS       NM_204212               2751 bp    mRNA    linear   VRT 11-JAN-2017
DEFINITION  Gallus gallus hexokinase 2 (HK2), mRNA.
ACCESSION   NM_204212
VERSION     NM_204212.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB083370.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB083370.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
     gene            1..2751
                     /gene="HK2"
                     /gene_synonym="hexokinase-2"
                     /note="hexokinase 2"
                     /db_xref="CGNC:49018"
                     /db_xref="GeneID:374044"
     CDS             1..2751
                     /gene="HK2"
                     /gene_synonym="hexokinase-2"
                     /EC_number="2.7.1.1"
                     /codon_start=1
                     /product="hexokinase-2"
                     /protein_id="NP_989543.1"
                     /db_xref="CGNC:49018"
                     /db_xref="GeneID:374044"
                     /translation="MIASHLLAYFFTELNHDQAQKVDKYLYHMRLSEDTLQEVSERFR
                     KEMEKGLGADTNPTASVKMLPSFVRSTPDGTEDGDFLALDLGGTNFRVLRVKVSDNGL
                     QKVEMESQIYEIHEDLMRGSGMQLFDHIAECLGNFMEKLKIKDKKLPLGFTFSFPCHQ
                     TKLDESILVNWTKGFKCSSVEGKDVVSLLRRAIKKRGDFDIDIVAVVNDTVGTMMSCG
                     YDDQNCEVGLIVGTGTNACYMEEMRHIDLVEGDEGRMCINMEWGAFGDDGALNDIRTE
                     FDHEIDMGSLNPGKQLFEKMISGMYMGELVRLILVKMAKEGLLFQGKLSSDLRTTGHF
                     ETRFVSAIEKEKEGLQKAHEILTKLGLEPSHEDCLATHRICQIVSTRSANLCGATLAA
                     RLRRIKEYKGVDPLRSTVGVDGSVYKKYPHFARRLHKTVRKLLPDCEIRFVRSEDGSG
                     KGAAMVTAVAYRLAAQHKARQKILEALKLSHEQLLEVKRRMRVEMEKGLGKETHAEAT
                     VKMLPTYVCSTPDGTEKGDFLALDLGGTNFRVLLVRVRNGMRRGVEMHNKIYSIPLEV
                     MQGTGEELFDHIVHCISDFLEYMGMKGVSLPLGFTFSFPCKQTNLDEGILLKWTKGFK
                     ATGCEGEDVVSLLKEAIHRREEFDLDVVAVVNDTVGTMMTCGYEDPYCEVGLIVGTGS
                     NACYMEEMRNVELVEGDEGRMCVNMEWGAFGDNGCLDDIQTEFDLAVDELSLNPGKQR
                     FEKMISGMYLGEIVRNILMDFTKRGLLFRGRISERLKTRGIFETKFLSQIESDCLALL
                     QVRSILQHLGLESTCDDSIIVKEVCTVVARRAAQLCGAGMAAVVDKIRENRGLDFLKV
                     TVGVDGTLYKLHPHFSAIMQDTVRQLSPCCEVTFLQSEDGSGKGAALITAVACRIREA
                     GQ"
ORIGIN      
        1 atgatcgcgt cccatctgct cgcctatttc ttcacggagc tcaaccatga ccaggcgcag
       61 aaggtggaca aatacctgta ccacatgcgg ctctccgagg acacactgca ggaggtgtcc
      121 gagcgcttcc gcaaggagat ggagaagggg ctgggagccg acaccaaccc caccgcctcc
      181 gtcaagatgc tgccctcctt cgtcaggtcc accccggacg ggacagagga cggagacttc
      241 ttggcactgg acctgggcgg caccaacttt cgtgtgctga gggtgaaggt gtccgacaac
      301 ggcctgcaga aggtggagat ggagagccag atctacgaga tccacgagga cctcatgcga
      361 ggcagtggga tgcagctctt tgaccacatc gccgagtgcc tgggcaactt catggagaag
      421 ctgaaaatca aggacaagaa gctgcccctt ggcttcacct tctccttccc gtgtcaccag
      481 accaagctgg atgagagcat cctcgtcaac tggacaaagg gattcaagtg cagcagcgtg
      541 gaggggaagg acgtggtgtc cctgctgcgc agggccatca aaaagcgcgg ggacttcgac
      601 atcgacatcg tggcggtggt aaacgacacc gttggcacca tgatgtcctg tggctatgat
      661 gaccagaact gtgaagtcgg actcatcgtg gggacgggca ccaacgcctg ctacatggag
      721 gagatgaggc acatcgacct ggtggagggg gacgagggcc ggatgtgcat caacatggag
      781 tggggcgcct tcggggacga cggcgcgctc aacgacatca ggaccgagtt cgaccatgag
      841 atagacatgg gctcgctcaa ccccggcaag cagctgttcg agaagatgat cagcgggatg
      901 tacatgggcg agctggtgcg cctcatcctg gtgaagatgg ccaaggaggg gctcctcttc
      961 caagggaagc tctcttcgga tctgcgcacc accggacact tcgagaccag atttgtctcc
     1021 gctattgaga aggagaaaga ggggctgcag aaagcccacg agatcctcac caagctgggc
     1081 ctggagccat cccacgagga ctgcctggcc acccaccgca tctgccagat cgtctccacc
     1141 cgctcggcca acctctgtgg ggccacgctg gccgcccgtc tgcgccgcat caaggagtat
     1201 aagggggtgg acccgctgcg ctccaccgtc ggcgtggatg gctccgtcta caagaagtac
     1261 ccgcactttg cccgacgcct ccataagaca gtgaggaagc tgctgcccga ctgcgagatc
     1321 cgattcgtga ggtcggaaga tggcagtggt aaaggggcgg ccatggtgac ggcggtggcc
     1381 taccggctgg cggcccagca caaggcccgg cagaagatcc tggaggcgct gaagctgagc
     1441 cacgagcagc tcctggaggt gaagcggagg atgagggttg aaatggagaa ggggttgggc
     1501 aaggagacgc acgcggaggc cacggtgaag atgctgccca catacgtgtg ctcaactcca
     1561 gacgggacag aaaaaggaga tttcctcgct ctggacctgg gggggacgaa cttccgtgtg
     1621 ctgctggtgc gggtgcggaa cgggatgcgg cgcggcgtgg agatgcacaa caagatctac
     1681 tccatccccc tggaggtgat gcaggggaca ggcgaggagc tcttcgacca catcgtccac
     1741 tgcatctccg acttcctgga atacatgggg atgaagggag tgtcgctccc gctgggcttc
     1801 accttctcct tcccatgcaa gcagaccaac ctggatgagg ggattctcct caagtggacg
     1861 aagggtttca aagccacggg ctgcgaaggg gaggacgtgg tgagcctgct gaaggaggca
     1921 atccaccgca gagaggagtt tgacctggac gtggtggcag tggtgaacga cacggtgggc
     1981 accatgatga cctgtggcta cgaagacccc tactgtgaag tcgggctgat agttggcaca
     2041 ggcagcaacg cctgctacat ggaggagatg cggaacgtgg agctggtgga gggcgacgag
     2101 ggccgcatgt gtgtcaacat ggagtggggt gcgtttgggg acaacggctg cttggatgac
     2161 atccagaccg agttcgattt ggccgtagat gagctgtccc tcaaccctgg gaagcagaga
     2221 tttgagaaga tgatcagcgg gatgtacctg ggggagatcg tccgcaacat cctgatggac
     2281 ttcaccaagc gagggctgct cttccgcggc cgcatctcag agcggctcaa gaccagaggg
     2341 atcttcgaga caaagttcct gtcccagata gaaagcgact gcctggccct gctgcaggtg
     2401 cgctccatcc tccagcacct gggcttggag agcacgtgtg atgacagcat catcgtcaag
     2461 gaggtgtgca ccgtggtggc ccggcgtgcc gcgcagctct gcggggccgg aatggccgcc
     2521 gtggtggata agatccgcga gaaccgtggg ctggacttcc tcaaggtgac ggtcggagtg
     2581 gatgggacgc tctacaaact gcacccacac ttctcggcca tcatgcagga cacggtgagg
     2641 cagctgtccc cgtgctgcga ggtgacgttc ctgcagtcgg aggacggcag cggtaaaggc
     2701 gcggcgctca tcacggccgt ggcgtgccgg atccgtgagg ccggtcagtg a
//

LOCUS       NM_001348012            2521 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ubiquitin specific peptidase 7 (USP7), transcript
            variant 2, mRNA.
ACCESSION   NM_001348012
VERSION     NM_001348012.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000130.1.
            
            Transcript Variant: This variant (2) differs in the 3' coding
            region and contains a distinct 3' UTR, compared to variant 1. The
            resulting isoform (2) has a shorter and distinct C-terminus,
            compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-240               AADN04000130.1     5955168-5955407
            241-345             AADN04000130.1     5978477-5978581
            346-544             AADN04000130.1     5983587-5983785
            545-683             AADN04000130.1     5985141-5985279
            684-772             AADN04000130.1     5988319-5988407
            773-881             AADN04000130.1     5989123-5989231
            882-1012            AADN04000130.1     5994344-5994474
            1013-1067           AADN04000130.1     5997303-5997357
            1068-1148           AADN04000130.1     5998393-5998473
            1149-1239           AADN04000130.1     5998561-5998651
            1240-1322           AADN04000130.1     5999425-5999507
            1323-1432           AADN04000130.1     6000453-6000562
            1433-1589           AADN04000130.1     6000975-6001131
            1590-1734           AADN04000130.1     6002153-6002297
            1735-1865           AADN04000130.1     6002875-6003005
            1866-2000           AADN04000130.1     6004074-6004208
            2001-2102           AADN04000130.1     6004362-6004463
            2103-2521           AADN04000130.1     6005189-6005607
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /map="14"
                     /breed="Red Jungle Fowl"
     gene            1..2521
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /note="ubiquitin specific peptidase 7"
                     /db_xref="CGNC:5523"
                     /db_xref="GeneID:395126"
     CDS             162..2225
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /EC_number="3.4.19.12"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ubiquitin carboxyl-terminal hydrolase 7; ubiquitin
                     specific protease 7; ubiquitin thioesterase 7; ubiquitin
                     specific peptidase 7 (herpes virus-associated);
                     deubiquitinating enzyme 7; ubiquitin-specific-processing
                     protease 7"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 7 isoform
                     2"
                     /protein_id="NP_001334941.1"
                     /db_xref="CGNC:5523"
                     /db_xref="GeneID:395126"
                     /translation="MNHHQQQQHQKPGEQQLSEPEDMEMEAGDADDPPRITQNPVING
                     NVAMADGHNNTEEDMEDDTSWRSEATFQFTVERFNRLSESVLSPPCFVRNLPWKIMVM
                     PRLYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFH
                     KENDWGFSNFMAWSEVTDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKN
                     QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGT
                     KKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQC
                     KHVDYRSERIEDYYDIQLSIKGKKNIFESFIDYVAVEQLDGDNKYDAGEHGLQEAEKG
                     VKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL
                     HAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR
                     HCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQ
                     VQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWP
                     MQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPEMAATGATLPKFDKD
                     RKLMC"
     misc_feature    318..785
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
                     Region: Interaction with p53/TP53.
                     {ECO:0000250|UniProtKB:Q93009}"
     misc_feature    369..776
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
                     Region: Necessary for nuclear localization.
                     {ECO:0000250|UniProtKB:Q93009}"
ORIGIN      
        1 ccctgcccgc cggagcccag ccgcagcccc ccgaggcggg cgcccaaccc cggcagctgc
       61 ccgtgccccg ccgctcctcc gccccgtccc ctcccgacgc agccccgcag ccccccacgg
      121 gaaaggccca ggccgccgcc gagcccgagt cccatcccga catgaaccac catcagcagc
      181 agcagcacca gaagcccggg gagcagcagc tgagcgagcc cgaggacatg gagatggaag
      241 ctggagatgc agatgatcct ccaagaatta ctcaaaaccc tgtcattaat gggaatgtag
      301 caatggctga tggacacaac aacactgaag aagacatgga agatgataca agttggcggt
      361 cagaggctac ctttcagttc acagtcgaac gcttcaacag attgagtgag tcagttctca
      421 gccctccctg ctttgtacgg aatttgccat ggaagatcat ggtcatgcca cgactctacc
      481 cagacagacc tcaccaaaaa agcgtaggat tcttcctcca gtgcaatgca gaatctgatt
      541 ccacgtcatg gtcttgtcat gcacaagcag ttctcaagat aataaactac aaagatgatg
      601 aaaaatcatt cagtcgtcgt attagtcact tgttctttca taaggaaaat gactggggct
      661 tttccaactt tatggcctgg agtgaagtta ctgatcctga aaagggcttt atagaagagg
      721 acaaggttac ttttgaagtc tatgttcaag cagatgctcc ccatggagtg gcgtgggatt
      781 caaagaagca cacaggatat gttggcttaa agaaccaggg agcaacttgt tacatgaaca
      841 gtttgttaca gactttattt ttcacaaatc aactacgaaa ggctgtgtac atgatgccca
      901 ctgaaggaga tgattcatcc aaaagtgttc ctttagcatt gcaaagagtg ttttatgagc
      961 tgcaacatag tgacaaacca gttggaacta aaaagctaac aaagtctttt gggtgggaaa
     1021 ctttagacag cttcatgcaa catgatgtcc aggagttatg tcgagtgctg cttgataacg
     1081 tggaaaataa aatgaaaggc acatgtgtag aaggcactat tcctaaattg ttcagaggaa
     1141 agatggtgtc ttatatccaa tgcaaacatg tagactatcg atctgaacga atagaagatt
     1201 attatgatat ccagctaagt ataaagggaa agaaaaatat ttttgagtcc ttcattgact
     1261 atgttgcagt ggagcagttg gatggtgata acaagtatga tgcaggagag catggcttgc
     1321 aggaggcaga gaaaggtgtg aagttcctaa cgttgccacc agtactacat ctgcagctca
     1381 tgagatttat gtatgatcct cagactgatc aaaacatcaa gataaatgat aggtttgagt
     1441 ttcctgaaca gttgccacta gatgaatttt tgcaaaaaac agatcctaaa gatccagcaa
     1501 attacattct tcatgcagtt ctagtacaca gtggagataa ccatggtgga cattatgttg
     1561 tttacttaaa tccaaagggt gatggaaaat ggtgtaaatt tgatgatgac gttgtatcaa
     1621 gatgtaccaa ggaagaggcg attgaacaca actatggagg ccacgacgac gacttatctg
     1681 tacggcactg cactaacgcg tacatgttgg tttacatcag ggaatcgaaa ttaagtgaag
     1741 tcttgcagcc tgttacggac catgatattc ctcagcaact tgtggaaagg ctacaagaag
     1801 agaaaagaat agaggctcag aagaggaagg agaggcagga agctcacctc tacatgcaag
     1861 tgcagatagt agcagaggat cagttctgcg gccaccaagg caatgacatg tatgatgaag
     1921 aaaaagtgaa atacaccgtt ttcaaagtat taaaaaactc cacgttgaca gaatttgttc
     1981 aaaacctctc tcaaacaatg ggatttcccc aggatcagat cagattatgg ccaatgcaag
     2041 ctagaagtaa tggaacaaaa agacctgcaa tgttagataa tgaagcagat ggcaataaaa
     2101 caatgattga gctcagcgac aatgaaaatc catggacaat atttttggaa acagtagatc
     2161 cagagatggc tgctactgga gcaacattac ccaagtttga taaagatcgt aagcttatgt
     2221 gctaaatctt gagtaaatgc aaaattcttt ggacatatct caagaaatgc tgtgcgctcc
     2281 tgtttttcaa tgctgttgtt gatgtactca tcaagctaca gagctggaat tagtttttct
     2341 tatacacttt ttgccctcac ttctacttaa gtggaaggca tgtttcaaat gttactggaa
     2401 taactgaata atttattttc tataaatata tgcagattta cataaaatca gtatttaagg
     2461 atgttttaag gatattaatc aaatgaataa aggaaggcct tttttttttt tactgcttaa
     2521 a
//

LOCUS       NM_204182               1454 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus creatine kinase, mitochondrial 1A (CKMT1A), mRNA.
ACCESSION   NM_204182 XM_429227
VERSION     NM_204182.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1454)
  AUTHORS   Muhlebach SM, Wirz T, Brandle U and Perriard JC.
  TITLE     Evolution of the creative kinases. The chicken acidic type
            mitochondrial creatine kinase gene as the first nonmammalian gene
  JOURNAL   J. Biol. Chem. 271 (20), 11920-11929 (1996)
   PUBMED   8662608
REFERENCE   2  (bases 1 to 1454)
  AUTHORS   Hossle JP, Schlegel J, Wegmann G, Wyss M, Bohlen P, Eppenberger HM,
            Wallimann T and Perriard JC.
  TITLE     Distinct tissue specific mitochondrial creatine kinases from
            chicken brain and striated muscle with a conserved CK framework
  JOURNAL   Biochem. Biophys. Res. Commun. 151 (1), 408-416 (1988)
   PUBMED   2831887
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CO421284.1, BU295295.1, BU118323.1 and BU339387.1.
            On Jan 4, 2017 this sequence version replaced gi:45383751.
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               CO421284.1         9-153
            146-754             BU295295.1         1-609
            755-1440            BU118323.1         1-686
            1441-1454           BU339387.1         617-630
FEATURES             Location/Qualifiers
     source          1..1454
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="10"
                     /map="10"
     gene            1..1454
                     /gene="CKMT1A"
                     /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
                     /note="creatine kinase, mitochondrial 1A"
                     /db_xref="CGNC:48997"
                     /db_xref="GeneID:374002"
     CDS             61..1314
                     /gene="CKMT1A"
                     /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
                     /EC_number="2.7.3.2"
                     /note="creatine kinase U-type, mitochondrial; creatine
                     kinase, ubiquitous mitochondrial; ubiquitous mitochondrial
                     creatine kinase; acidic-type mitochondrial creatine
                     kinase; creatine kinase, mitochondrial 1B"
                     /codon_start=1
                     /product="creatine kinase U-type, mitochondrial precursor"
                     /protein_id="NP_989513.2"
                     /db_xref="CGNC:48997"
                     /db_xref="GeneID:374002"
                     /translation="MASTFARALSARRSAGLLAMVGAGSLAAGFLLARDTVSAGERQR
                     RRYPPSAEYPDLRKHNNCMASNLTPAIYARLCDKATPNGWTLDQCIQTGVDNPGHPFI
                     KTVGMVAGDEETYEVFAELFDPVIQERHNGYNPRTMKHVTDLDASKIKFGHFDERYVL
                     SSRVRTGRSIRGLSLPPACTRAERREVEKVTVEALNGLTGDLSGRYYRLSEMTEKEQQ
                     QLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKTFLIWINEEDHTRVISMEKG
                     GNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPL
                     LSKDSRFPKILENLRLQKRGTGGVDTAATGNVFDISNLDRLGKSEVELVQLVIDGVNY
                     LIDCERRLEKGQDIRIPSPVPQFRH"
     transit_peptide 61..177
                     /gene="CKMT1A"
                     /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Mitochondrion. {ECO:0000269|PubMed:2831887};
                     propagated from UniProtKB/Swiss-Prot (P70079.1)"
     mat_peptide     178..1311
                     /gene="CKMT1A"
                     /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
                     /product="Creatine kinase U-type, mitochondrial"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P70079.1)"
ORIGIN      
        1 ccgttcccat tcccatcacc tcctccgccg gcccccgccg cgctcgctcc ccgctccgcg
       61 atggccagca ccttcgcccg cgctctctcc gcccgccgct ctgccgggct cctggccatg
      121 gtgggcgccg gctctctcgc cgccggcttt ctgctcgccc gggacacggt cagcgccggc
      181 gagcggcagc ggcggcgcta cccgcccagt gctgagtacc ccgacctgcg gaaacacaac
      241 aactgcatgg ccagcaacct gacgccagcc atctacgcac ggctctgtga caaagccacc
      301 cccaacggct ggaccttgga ccagtgcatt cagaccggcg tggacaaccc aggccaccct
      361 ttcatcaaga cagtgggcat ggtggctggt gatgaggaga cgtatgaggt gtttgcagag
      421 ctgtttgacc ccgtgatcca ggagcggcac aacgggtaca acccccgcac catgaagcac
      481 gtcacggacc tggacgcctc caagattaag tttggccact tcgatgagcg ctacgtgctc
      541 tcatcccggg tccggaccgg gcgcagcatc cgtgggctga gccttccacc cgcctgcacc
      601 cgtgccgagc ggcgggaggt ggagaaggtg acggtggagg ctctgaatgg cctcacaggg
      661 gatctgtcgg gccgctacta ccgtctcagc gagatgacag agaaggagca gcagcagctc
      721 attgatgacc acttcctctt tgacaagccg gtgtcccctc tcctgacggc agcaggaatg
      781 gcccgggact ggcccgacgc ccgaggcatc tggcacaaca atgagaagac cttcctgatc
      841 tggatcaacg aggaggacca cacgcgcgtc atctccatgg agaagggtgg taacatgaag
      901 cgcgtctttg agcggttctg ccggggcctg aaggaggtgg agcgactaat ccaggagcga
      961 ggctgggagt tcatgtggaa tgagaggctg ggctacatcc tgacctgccc ctccaacctg
     1021 ggcaccgggc tgcgggcagg tgtccacatc aagctgccac tgctcagcaa ggacagccgc
     1081 ttccccaaga tcctggagaa cctgcggcta cagaagcgtg ggacaggcgg tgtggacaca
     1141 gcagccaccg gcaatgtctt cgacatctcc aacctggacc ggctggggaa gtcagaggtg
     1201 gaactggtgc agctggtgat agacggtgtg aactacctga tcgactgcga gcggcggctg
     1261 gagaagggtc aggacattcg catcccctcc ccagtaccac agttccggca ctgagccacg
     1321 ccgaggcagc gccagccctg caggacccag cttcccccat agcttatgcc atcaatgcgc
     1381 ccagcatgtc gctgtgctgt tacacacaga gccaggccag accccataaa catgtgctgc
     1441 tgtagcctta aaaa
//

LOCUS       NM_204788               1295 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus aminomethyltransferase (AMT), mRNA.
ACCESSION   NM_204788 NM_001347941
VERSION     NM_204788.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1295)
  AUTHORS   Han JY, Park TS, Kim JN, Kim MA, Lim D, Lim JM and Kim H.
  TITLE     Gene expression profiling of chicken primordial germ cell ESTs
  JOURNAL   BMC Genomics 7, 220 (2006)
   PUBMED   16939661
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1295)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   3  (bases 1 to 1295)
  AUTHORS   Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
            Korn B and Buerstedde JM.
  TITLE     A large database of chicken bursal ESTs as a resource for the
            analysis of vertebrate gene function
  JOURNAL   Genome Res. 10 (12), 2062-2069 (2000)
   PUBMED   11116100
REFERENCE   4  (bases 1 to 1295)
  AUTHORS   Okamura-Ikeda K, Fujiwara K and Motokawa Y.
  TITLE     Molecular cloning of a cDNA encoding chicken T-protein of the
            glycine cleavage system and expression of the functional protein in
            Escherichia coli. Effect of mRNA secondary structure in the
            translational initiation region on expression
  JOURNAL   J. Biol. Chem. 267 (26), 18284-18290 (1992)
   PUBMED   1526969
REFERENCE   5  (bases 1 to 1295)
  AUTHORS   Okamura-Ikeda K, Fujiwara K, Yamamoto M, Hiraga K and Motokawa Y.
  TITLE     Isolation and sequence determination of cDNA encoding T-protein of
            the glycine cleavage system
  JOURNAL   J. Biol. Chem. 266 (8), 4917-4921 (1991)
   PUBMED   2002038
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BG711851.1, AJ393058.1, DR418126.1, BU129545.1, AJ441868.1 and
            CR385258.1.
            On or before Jan 4, 2017 this sequence version replaced
            gi:1126305163, gi:45382156.
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                BG711851.1         1-46
            47-57               AJ393058.1         1-11
            58-78               DR418126.1         83-103
            79-126              BU129545.1         27-74
            127-324             AJ441868.1         47-244
            325-1295            CR385258.1         1-971
FEATURES             Location/Qualifiers
     source          1..1295
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="12"
                     /map="12"
     gene            1..1295
                     /gene="AMT"
                     /gene_synonym="GCVT"
                     /note="aminomethyltransferase"
                     /db_xref="CGNC:49377"
                     /db_xref="GeneID:395566"
     CDS             86..1264
                     /gene="AMT"
                     /gene_synonym="GCVT"
                     /EC_number="2.1.2.10"
                     /note="T-protein; aminomethyltransferase, mitochondrial;
                     glycine cleavage system T protein"
                     /codon_start=1
                     /product="aminomethyltransferase, mitochondrial precursor"
                     /protein_id="NP_990119.2"
                     /db_xref="CGNC:49377"
                     /db_xref="GeneID:395566"
                     /translation="MLRAGCRAALARRHLSSAPEGLKQTPLDALHRARGGRMVPFAGW
                     SLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVYGRDRVRFLESLVVGDIAELRPGQ
                     GTLTLLTNERGGIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVH
                     LEVSDNALLALQGPSMAQVLQAGLPDDLTKLTFMTSTATTVFGVPGCRVTRCGYTGED
                     GVEISVPAGRAVELAERLLGCPEVWPAGLAARDSLRLEAGLCLYGNDIDESTTPVEAG
                     LLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVG
                     TVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYYMAK
                     "
ORIGIN      
        1 gcggcatgtc ccaggcgccc cggcggggcg ggccgagccg tgccgagccg tgccgagccg
       61 cgctgagccg ggccggggcc ggaggatgct gcgggcgggg tgccgcgccg cgttggcccg
      121 acgccacctg agctcggcgc cggaggggct gaagcagacg ccgctggacg cgctgcaccg
      181 ggcccgcggc gggaggatgg tgccgttcgc cggctggagc ctgcccgtgc agtacggccg
      241 cgggcacctc gagtcgcacc tgcacacccg gcggcactgc tcgctgttcg acgtgtccca
      301 catgctgcag acgcgggtgt acgggaggga ccgcgtccgc ttcctggaga gcctggtggt
      361 gggggacatc gccgagctgc gcccgggaca gggcaccctg acgctgctca ccaacgagcg
      421 cggcggcatc gtggatgacc tcatcgtcac caacacggcc gaggaccacc tctacgtggt
      481 gtccaacgcg ggctgcgccg acaaggaccg agccgtcatg gagggcagag cagcagaact
      541 gagggcggcc ggtggcgacg tgcacctgga ggtgtcggac aacgcgctgc tggcgctgca
      601 agggccctcc atggcacagg tgctgcaggc cgggctgccg gatgacctga ccaagctgac
      661 cttcatgacc agcacagcca ccaccgtctt tggcgtgccg ggctgccgtg tgacacgctg
      721 cggctacacc ggcgaggacg gtgtggagat ctcagtgcct gcagggcgag cagtggagct
      781 ggctgagcgg ctgctgggct gccccgaggt gtggccggca gggctggcag cccgggacag
      841 cctgcgcctg gaggccgggc tctgcctcta cggcaacgac atcgatgaga gcaccacgcc
      901 agtggaggct gggctgctgt ggaccctggg gaagcgccgg cgcacagcca tggacttccc
      961 cggtgcagcc atcatcatgg agcaggtgaa ggagaagcca aagcggaagc gtgtggggct
     1021 gacatcggtg gggccccccc tccggccgcc tgccgccatc ctgggccccg agggcacacc
     1081 cgtgggcacg gtgaccagcg gctgcccctc gccctccctg ggcaagaaca tcgccatggg
     1141 ctacgtgcag gctgcgcaca gccgccccgg caccacgctc accgttgagg tgaggaagaa
     1201 gcagcacccg gcgctggtca ccaagatgcc cttcgtgccc acacattatt acatggccaa
     1261 gtgagacccg gccccattaa agcccctcgc tcatc
//

LOCUS       NM_001347945            1440 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus dynactin subunit 2 (DCTN2), mRNA.
ACCESSION   NM_001347945
VERSION     NM_001347945.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Froman DP, Kirby JD and Rhoads DD.
  TITLE     An expressed sequence tag analysis of the chicken reproductive
            tract transcriptome
  JOURNAL   Poult. Sci. 85 (8), 1438-1441 (2006)
   PUBMED   16903475
REFERENCE   2  (bases 1 to 1440)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   3  (bases 1 to 1440)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   4  (bases 1 to 1440)
  AUTHORS   Valetti C, Wetzel DM, Schrader M, Hasbani MJ, Gill SR, Kreis TE and
            Schroer TA.
  TITLE     Role of dynactin in endocytic traffic: effects of dynamitin
            overexpression and colocalization with CLIP-170
  JOURNAL   Mol. Biol. Cell 10 (12), 4107-4120 (1999)
   PUBMED   10588646
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DT659451.1, CD215977.1, BU131902.1 and DR427218.1.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                DT659451.1         1-21
            22-486              CD215977.1         1-465
            487-1216            BU131902.1         1-730
            1217-1440           DR427218.1         1-224               c
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /breed="Leghorn"
     gene            1..1440
                     /gene="DCTN2"
                     /gene_synonym="P50"
                     /note="dynactin subunit 2"
                     /db_xref="CGNC:49387"
                     /db_xref="GeneID:395587"
     CDS             34..1248
                     /gene="DCTN2"
                     /gene_synonym="P50"
                     /note="dynamitin; p50 dynamitin; dynactin 2 (p50)"
                     /codon_start=1
                     /product="dynactin subunit 2"
                     /protein_id="NP_001334874.1"
                     /db_xref="CGNC:49387"
                     /db_xref="GeneID:395587"
                     /translation="MADPKYADLPGIARNEPDVYETSDLPEDDQAEFEAELEELTSTS
                     VEHLIINPNAAFEKFKDKRLGTDGVDFSDRISKSRTTGYESGEYEILGEGLGAKETPQ
                     QRYQRLQHEVQELIRDVEQIQSAVKESAAEEELTPMALARQLEGLKQQLVSCHLQKLL
                     GPTAAIDFADPEGALAKRLQQQLEVAKCKKAAPAKSPPKAPAPTTDALTFELFWRPEQ
                     DQFSQTAKIAELEKRLAQLEAMVRCEPDSQNPLLVGLKGTSLVETVQILQAKVNILDA
                     AVLDQVEARLQSVLGKVNEIAKHKAIVQDADTQSKIHQVYEMMQRWDHMASSLPDVVQ
                     RLLTLRDLHEQASRFVQVLVHLDTTQQEVAAALKDNTVLLAEVQKTMKENLAVVEDNF
                     AEVEARIKRLQK"
ORIGIN      
        1 ccccgcccgg ccctgacggc ccccgccgca gccatggccg accccaaata cgcggacctg
       61 cccggcatcg cccggaatga gcccgacgtg tacgagacca gcgacctccc cgaggatgac
      121 caggccgagt tcgaggcgga gctggaggag ctcaccagca ccagcgtgga gcacctcatc
      181 atcaacccca acgccgcctt cgagaagttc aaggacaaac gcctgggcac cgatggcgtg
      241 gatttctccg accgcatcag caagagcaga accactggct atgagtctgg ggagtatgaa
      301 attctgggag aggggttggg tgccaaggag accccccagc agcggtacca gcggctgcag
      361 cacgaggtgc aggagctgat ccgtgatgtg gagcagatcc agagcgccgt gaaggagtcg
      421 gcggccgagg aagagctgac gcccatggct ttggcccggc agctggaggg gctgaagcag
      481 cagttggttt cgtgccatct gcagaagctg ttgggcccca ctgccgccat cgacttcgcg
      541 gaccctgagg gtgccttggc gaagcgcctg cagcagcagc tggaagtagc caagtgcaag
      601 aaggcagcgc cagcaaagag cccccccaaa gcccctgcgc ccaccactga cgcgctcacc
      661 ttcgaactgt tctggaggcc agagcaggac cagttctccc agactgccaa gatagcagag
      721 ctggagaagc gcctggcaca gctggaggcc atggtgcgct gtgagcctga cagccagaat
      781 cctctgctag ttgggctgaa gggcaccagc ctcgtggaga ccgtgcagat cctgcaggcc
      841 aaggttaaca tcctggacgc agctgtgctg gaccaagtgg aggcccggct gcagagcgtc
      901 ctggggaagg tgaatgagat tgccaagcac aaagcgattg tgcaggatgc cgacacgcag
      961 agcaagatcc atcaggtcta cgagatgatg cagcgctggg accacatggc cagcagtctg
     1021 cccgacgtgg tgcagcggct gctgacgctc cgggacctac atgagcaggc ctcacgattt
     1081 gtgcaggtgc tggtgcacct ggacaccaca cagcaggagg tggctgctgc tctgaaggat
     1141 aacactgtgc tgctggcaga ggtccagaag acaatgaagg agaacctggc tgttgtagag
     1201 gacaactttg ctgaagtaga ggcccgcatc aagcggctgc agaagtgaga gcagctctgc
     1261 gcccatctct gagggcccgc gttgttcagc cccctcgcct gatgccccct ggaatccccc
     1321 caaccccgca ggaaccagcc cctgctcctg tgtacctggc tgtgttcccc tctgctcccc
     1381 ccccctccat tccccccagg gccgtgtgac tgcctctcac acccagatga tccaaataaa
//

LOCUS       NM_204471               4742 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ubiquitin specific peptidase 7 (USP7), transcript
            variant 1, mRNA.
ACCESSION   NM_204471
VERSION     NM_204471.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000130.1.
            On Dec 29, 2016 this sequence version replaced gi:45383222.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-240               AADN04000130.1     5955168-5955407
            241-345             AADN04000130.1     5978477-5978581
            346-544             AADN04000130.1     5983587-5983785
            545-683             AADN04000130.1     5985141-5985279
            684-772             AADN04000130.1     5988319-5988407
            773-881             AADN04000130.1     5989123-5989231
            882-1012            AADN04000130.1     5994344-5994474
            1013-1067           AADN04000130.1     5997303-5997357
            1068-1148           AADN04000130.1     5998393-5998473
            1149-1239           AADN04000130.1     5998561-5998651
            1240-1322           AADN04000130.1     5999425-5999507
            1323-1432           AADN04000130.1     6000453-6000562
            1433-1589           AADN04000130.1     6000975-6001131
            1590-1734           AADN04000130.1     6002153-6002297
            1735-1865           AADN04000130.1     6002875-6003005
            1866-2000           AADN04000130.1     6004074-6004208
            2001-2102           AADN04000130.1     6004362-6004463
            2103-2208           AADN04000130.1     6005189-6005294
            2209-2301           AADN04000130.1     6005686-6005778
            2302-2369           AADN04000130.1     6006631-6006698
            2370-2470           AADN04000130.1     6007274-6007374
            2471-2624           AADN04000130.1     6008728-6008881
            2625-2692           AADN04000130.1     6010185-6010252
            2693-2801           AADN04000130.1     6011375-6011483
            2802-2879           AADN04000130.1     6011582-6011659
            2880-2980           AADN04000130.1     6011958-6012058
            2981-3080           AADN04000130.1     6012505-6012604
            3081-3200           AADN04000130.1     6013395-6013514
            3201-3272           AADN04000130.1     6014776-6014847
            3273-3363           AADN04000130.1     6015728-6015818
            3364-4742           AADN04000130.1     6018426-6019804
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /map="14"
                     /breed="Red Jungle Fowl"
     gene            1..4742
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /note="ubiquitin specific peptidase 7"
                     /db_xref="CGNC:5523"
                     /db_xref="GeneID:395126"
     CDS             162..3470
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /EC_number="3.4.19.12"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ubiquitin carboxyl-terminal hydrolase 7; ubiquitin
                     specific protease 7; ubiquitin thioesterase 7; ubiquitin
                     specific peptidase 7 (herpes virus-associated);
                     deubiquitinating enzyme 7; ubiquitin-specific-processing
                     protease 7"
                     /codon_start=1
                     /product="ubiquitin carboxyl-terminal hydrolase 7 isoform
                     1"
                     /protein_id="NP_989802.2"
                     /db_xref="CGNC:5523"
                     /db_xref="GeneID:395126"
                     /translation="MNHHQQQQHQKPGEQQLSEPEDMEMEAGDADDPPRITQNPVING
                     NVAMADGHNNTEEDMEDDTSWRSEATFQFTVERFNRLSESVLSPPCFVRNLPWKIMVM
                     PRLYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFH
                     KENDWGFSNFMAWSEVTDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKN
                     QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGT
                     KKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQC
                     KHVDYRSERIEDYYDIQLSIKGKKNIFESFIDYVAVEQLDGDNKYDAGEHGLQEAEKG
                     VKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL
                     HAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR
                     HCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQ
                     VQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWP
                     MQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPEMAATGATLPKFDKD
                     HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCERAGFPQETNLILYEEVKP
                     NLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIF
                     CDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHN
                     YEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITVYPDK
                     HGCVRDLLEECKKVVELSEKGSGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI
                     EEIPLDQVDIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQTMLDI
                     QEKEFEKFKFAIVMMGRHQYLNEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR
                     SRYTYLEKAIKIHN"
     misc_feature    318..785
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
                     Region: Interaction with p53/TP53.
                     {ECO:0000250|UniProtKB:Q93009}"
     misc_feature    369..776
                     /gene="USP7"
                     /gene_synonym="UBP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
                     Region: Necessary for nuclear localization.
                     {ECO:0000250|UniProtKB:Q93009}"
ORIGIN      
        1 ccctgcccgc cggagcccag ccgcagcccc ccgaggcggg cgcccaaccc cggcagctgc
       61 ccgtgccccg ccgctcctcc gccccgtccc ctcccgacgc agccccgcag ccccccacgg
      121 gaaaggccca ggccgccgcc gagcccgagt cccatcccga catgaaccac catcagcagc
      181 agcagcacca gaagcccggg gagcagcagc tgagcgagcc cgaggacatg gagatggaag
      241 ctggagatgc agatgatcct ccaagaatta ctcaaaaccc tgtcattaat gggaatgtag
      301 caatggctga tggacacaac aacactgaag aagacatgga agatgataca agttggcggt
      361 cagaggctac ctttcagttc acagtcgaac gcttcaacag attgagtgag tcagttctca
      421 gccctccctg ctttgtacgg aatttgccat ggaagatcat ggtcatgcca cgactctacc
      481 cagacagacc tcaccaaaaa agcgtaggat tcttcctcca gtgcaatgca gaatctgatt
      541 ccacgtcatg gtcttgtcat gcacaagcag ttctcaagat aataaactac aaagatgatg
      601 aaaaatcatt cagtcgtcgt attagtcact tgttctttca taaggaaaat gactggggct
      661 tttccaactt tatggcctgg agtgaagtta ctgatcctga aaagggcttt atagaagagg
      721 acaaggttac ttttgaagtc tatgttcaag cagatgctcc ccatggagtg gcgtgggatt
      781 caaagaagca cacaggatat gttggcttaa agaaccaggg agcaacttgt tacatgaaca
      841 gtttgttaca gactttattt ttcacaaatc aactacgaaa ggctgtgtac atgatgccca
      901 ctgaaggaga tgattcatcc aaaagtgttc ctttagcatt gcaaagagtg ttttatgagc
      961 tgcaacatag tgacaaacca gttggaacta aaaagctaac aaagtctttt gggtgggaaa
     1021 ctttagacag cttcatgcaa catgatgtcc aggagttatg tcgagtgctg cttgataacg
     1081 tggaaaataa aatgaaaggc acatgtgtag aaggcactat tcctaaattg ttcagaggaa
     1141 agatggtgtc ttatatccaa tgcaaacatg tagactatcg atctgaacga atagaagatt
     1201 attatgatat ccagctaagt ataaagggaa agaaaaatat ttttgagtcc ttcattgact
     1261 atgttgcagt ggagcagttg gatggtgata acaagtatga tgcaggagag catggcttgc
     1321 aggaggcaga gaaaggtgtg aagttcctaa cgttgccacc agtactacat ctgcagctca
     1381 tgagatttat gtatgatcct cagactgatc aaaacatcaa gataaatgat aggtttgagt
     1441 ttcctgaaca gttgccacta gatgaatttt tgcaaaaaac agatcctaaa gatccagcaa
     1501 attacattct tcatgcagtt ctagtacaca gtggagataa ccatggtgga cattatgttg
     1561 tttacttaaa tccaaagggt gatggaaaat ggtgtaaatt tgatgatgac gttgtatcaa
     1621 gatgtaccaa ggaagaggcg attgaacaca actatggagg ccacgacgac gacttatctg
     1681 tacggcactg cactaacgcg tacatgttgg tttacatcag ggaatcgaaa ttaagtgaag
     1741 tcttgcagcc tgttacggac catgatattc ctcagcaact tgtggaaagg ctacaagaag
     1801 agaaaagaat agaggctcag aagaggaagg agaggcagga agctcacctc tacatgcaag
     1861 tgcagatagt agcagaggat cagttctgcg gccaccaagg caatgacatg tatgatgaag
     1921 aaaaagtgaa atacaccgtt ttcaaagtat taaaaaactc cacgttgaca gaatttgttc
     1981 aaaacctctc tcaaacaatg ggatttcccc aggatcagat cagattatgg ccaatgcaag
     2041 ctagaagtaa tggaacaaaa agacctgcaa tgttagataa tgaagcagat ggcaataaaa
     2101 caatgattga gctcagcgac aatgaaaatc catggacaat atttttggaa acagtagatc
     2161 cagagatggc tgctactgga gcaacattac ccaagtttga taaagatcat gatgtaatgt
     2221 tgtttctgaa gatgtatgat ccgaaaactc ggagtttgaa ttattgtgga catatctaca
     2281 cacctatatc ctgtaaaata cgtgacttgc ttccagttat gtgtgagaga gcaggatttc
     2341 cacaagaaac taaccttatc ctctatgagg aagttaaacc caatttaaca gaaaggattc
     2401 aagactatga tgtgtctctt gataaagctc ttgatgaact catggatggt gacatcatag
     2461 tgtttcagaa ggatgaccca gaaaacgata acagtgagct gccaacagct aaggaatact
     2521 tcagagacct ctatcatcgt gtggatgtca ttttctgtga taaaaccatc cccaacgacc
     2581 ctggttttgt tgttactttg tccaatagga tgaattactt tcaggttgca aagacagttg
     2641 cacaaagact taatacagat ccaatgctat tacagttttt caagtctcaa ggttataggg
     2701 acggccctgg taatcccctt aggcacaatt atgaaggtac tttaagagat cttctgcagt
     2761 tcttcaagcc taggcaacct aaaaagcttt actatcaaca gctcaaaatg aaaataactg
     2821 attttgaaaa cagaagaagt tttaaatgca tatggctaaa tagccaattt agggaagagg
     2881 aaataacagt atatccagat aagcatgggt gtgtgcggga cctcttagaa gaatgtaaaa
     2941 aagttgtaga gctctctgaa aaaggttcag ggaaattaag gctgctagaa attgtaagtt
     3001 acaaaataat tggcgtccat caggaagatg agctgttaga gtgtttgtca cccgcaacaa
     3061 gtcgaacgtt tcgaatagag gaaattcctc tggaccaggt agatatagat aaagaaaatg
     3121 agatgctaat cacagtggca catttccaca aggaggtttt tgggacattt ggaattccgt
     3181 tcttgctgag gatacaccag ggcgaacact tcagagaggt tatgaagcgg attcagacaa
     3241 tgctggacat acaggaaaaa gaatttgaaa agtttaaatt tgcaattgta atgatgggcc
     3301 gacaccaata tctcaatgaa gatgagtatg aagtgaactt gaaagatttt gagccccaac
     3361 caggcaacat gtctcatcca aggccgtggc tagggcttga ccatttcaat aaagccccaa
     3421 agagaagtcg ctacacttac cttgaaaaag ctattaaaat ccataactga cttaataaac
     3481 cagattgtcg aggcaaggga caaaataagt gtgtgtgtgc acctttttaa caactgtaga
     3541 actttggtac acgtgcacta tatctgaagt cttcagcaag aggatttgct gctgatgtta
     3601 attttatttt gttgaggctg ttcagtttgg cttctctgta tctattgact gccctttttg
     3661 agcaaaatga aggtgttttt ataaagcttg gatgccaatg agagttattt tatggtaaac
     3721 gtaatgcaag gcaattgtca gcataatgag ggaagagttt agtagaacaa ttgacattgg
     3781 caaaatattt gtctgtagta cgtttataga tggcataagc tggctggctg cctttcctgg
     3841 tatggtgttc accatcactg cagctagtaa gtcttatgtt tagactcaca tcagatttat
     3901 ttccttcagt tatactttaa atgacatttt tgtgcatttg taaatgcaaa aaactcacat
     3961 catcaataaa tagcaatctc tacttcattg tgtacattgt tggcacttat ttgggatttt
     4021 tgtctcctcc agctgcatag aatctttttt aataaactag ttttcattta atttagtcac
     4081 tacttcgcat cccgttttgc caagcggatg ccctgactcc tataatgaga tatttgggtc
     4141 tttttatgaa aatttcaacc attgttgaat acagttgcaa tttattatgc catcttctgg
     4201 cagatagaat gacactcaga gttggcaaaa gcaagtgaaa ggattataaa tatcattaat
     4261 ttagttaacg tgggaagaga cggggaaaac acgagaaata gccttttagc acagaggggc
     4321 atgctcacta gtgtttagta agctgttgac tttgtataaa aaaggaggaa aaaaaaagaa
     4381 aaaaaagaag aaatgaaatt gtatatttaa tgaatgaaca tgtacaattt aacacttgga
     4441 ggataatttt gttgggtgag tctgcaagtg aatttcactg atgttgatat tcattgtgtg
     4501 tagttttctt tcagtcccca gactgcttcc ttttattttg gagctaatgc cagccgcgtg
     4561 tctagttttg agtgcagtaa agatagaatc agcaattcac acttaacttt acattctttt
     4621 ccagtatttt attttgtttc tgtagctgca gtgtacaaca actcttcctg tatattgcct
     4681 ttttttgctg gaaaatgttg tatgttgaat aaaattttct ataaaatttt ccttcggtga
     4741 gt
//

LOCUS       NM_001006211            3002 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus SBDS ribosome assembly guanine nucleotide exchange
            factor (SBDS), mRNA.
ACCESSION   NM_001006211 XM_415725
VERSION     NM_001006211.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3002)
  AUTHORS   Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
  TITLE     Splenic gene expression profiling in White Leghorn layer inoculated
            with the Salmonella enterica serovar Enteritidis
  JOURNAL   Anim. Genet. 46 (6), 617-626 (2015)
   PUBMED   26358731
REFERENCE   2  (bases 1 to 3002)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000064.1.
            On Dec 21, 2016 this sequence version replaced gi:57525275.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720650.1, HAEL01010610.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201360, SAMEA2201368
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-167               AADN04000064.1     41929-42095         c
            168-297             AADN04000064.1     41185-41314         c
            298-498             AADN04000064.1     40398-40598         c
            499-663             AADN04000064.1     39997-40161         c
            664-3002            AADN04000064.1     37075-39413         c
FEATURES             Location/Qualifiers
     source          1..3002
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="19"
                     /map="19"
                     /breed="Red Jungle Fowl"
     gene            1..3002
                     /gene="SBDS"
                     /note="SBDS ribosome assembly guanine nucleotide exchange
                     factor"
                     /db_xref="CGNC:749"
                     /db_xref="GeneID:417477"
     CDS             40..792
                     /gene="SBDS"
                     /note="shwachman-Bodian-Diamond syndrome protein homolog"
                     /codon_start=1
                     /product="ribosome maturation protein SBDS"
                     /protein_id="NP_001006211.1"
                     /db_xref="CGNC:749"
                     /db_xref="GeneID:417477"
                     /translation="MSIFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAE
                     KDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQT
                     QLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQ
                     LKETMQIERAHMRLRFILPVKEGKKLKEKLKPLIKVIENEDFHDQLEIVCLIDPGCFR
                     EIDELIRSETKGKGTLEVLSLKDVEEGDEKLE"
     misc_feature    43..45
                     /gene="SBDS"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N-acetylserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (Q5ZIY4.1); acetylation site"
ORIGIN      
        1 gtgagtgacg cgggggtgca gcccggcaga gctgccgcca tgtccatctt cacccccacc
       61 aaccagatcc gcctcaccaa tgtggccgtg gtgcgggccc ggcgcgccgg aaagcgtttc
      121 gagatcgcct gttaccgcaa caaagtcatg ggctggcgta gcggagcgga gaaggatatt
      181 gacgaggtcc tgcagaccca cacagtgttt gtcaatgttt ccaaaggcca ggtggcaaag
      241 aaggaagacc tcgtccgggc atttggaaca gatgaccaaa cagaaatctg taaagtgatt
      301 ctatcaaaag gggagctgca ggtatcagac aaagaacgac agacacagct ggagcagatg
      361 tttagggaca ttgcaactat tgtggctgac aaatgtgtga atcctgagac aaagaggccg
      421 tacactgtaa tccttataga aagagccatg aaggatattc actactctgt caaaccaaac
      481 aagagcacta agcaacaggc actggaagtg atcagacagt taaaggagac catgcaaatt
      541 gaacgtgctc acatgaggtt acgatttatt cttccagtaa aggaggggaa aaaactgaaa
      601 gagaagctca agccactgat taaagttatt gagaatgaag actttcatga tcagttagaa
      661 attgtgtgcc ttattgaccc gggctgcttc agagagattg atgagctgat ccggtctgag
      721 accaaaggga aaggaacgct ggaagtgctc agtctgaaag atgtggagga aggagatgaa
      781 aagcttgaat aacaaaaacc cttctggagc actgcgacta cttcaacaat gtttaactga
      841 cactagccac tcttttctgt ttggccttct tgtttttctc caacctcttg ctgccaaata
      901 ccttctgaca cactaacccg ttgggatttt tccatgcagt gtgtttttta atcatttttc
      961 acttgcttgg tttgcaggtg atttgcctgt aggaacattt tgtgtcagag ttgcactagt
     1021 gagaattgag ttaagacttg atagggaatt tagctttggt gaatgttagg ggttgctgat
     1081 ggagagtgtt tgactgatat ggtgccaatc acttttgctt tgagttgtca gtgttgagtg
     1141 gaagactgta tgggccactg aggggtgggt gctgtacgtg aggagagaga cctttgggaa
     1201 agagagatac attttcactt tcagacaagt gcaaagtgtg catcgcatct gctgatctct
     1261 tggcagcatg aaaactgatg tagacatccg taattggctg cttaatcatt acagtagttt
     1321 aaaggaccat tcttgtatat ttccttcact gggtataaca gtacttgcta acttagaaaa
     1381 aatgttcacc aaataattta ttcataaaat atatttagct acattggtaa aaaaaaaaaa
     1441 aataataatt atcatctatt tatgtattac agatacagaa agaaataact atttttgtta
     1501 tagcatagga gctatccctg gctgcagtgg tgcatttgga ggctgacggc gtaggctgca
     1561 tttctgagct gttgtcattc atgggatgaa atgaagcgga tctctcccag acagtggcct
     1621 ctggccattg tgctagacgg gcttttgttg ggccctcatt ccctcgtggt agctgtcctt
     1681 tatcctgtgg ctttttatgc ttctttctag cacagcattt ccagccagct cccgaggcac
     1741 agcattctgt atagttttgt taaggcttgt ttcagctgtg cgaaacgaat gctttcaagt
     1801 ttaactcggg gatctcaaac aagaggggaa aagaggacag aagctggaaa gatactaaaa
     1861 atacaagaaa aatacaggcc cggtacatac ccctgggtgc ctgaaggcta agccagaagg
     1921 agtttaaggg gagcctttgg tgttcatgtg cctgtttcca tgctgataat acacagcgaa
     1981 tcaggatttg caagctggcc aaccactaga tctctgcttc acatgaatat gttatgttca
     2041 ttccttgctg cgtaatttta gagtaaatca ccttttatat gacaattaaa cagagctctg
     2101 gtttgtactc ttcacatggc cttttccttt gtaccactaa cagatgtgag ttttctaggg
     2161 ttgacgtggg aagatccgaa gtcaaccaga gaaagatttg aaatgttaga tgcagaggaa
     2221 cctaggtcct tagtcaggga cttcctcttt gaagttgcag cctgttgaca agagcttgtg
     2281 caaggttgga ttcaatttct ttagccacgt tttgggagga cttgccactg tggagcctga
     2341 gttttgctga agggttgtga aatggagaat cttgaactac ttaatcaatt ttaaaatgct
     2401 ttcctgttgc ccctgagata atctgctgtc ctgtttaaat gctgcctagg aaagtttggg
     2461 ggtgtaatca gtgcatttgt gaggtggaca aagtttaaac atggatatct gtacatgtgt
     2521 ggataggcag gcaagtttcc tcatatgtac aagcccttaa ctgcttgtct ttcaaatggc
     2581 catctcctca tgcattattg atgaaaagga tggtaatgct ggtatttaac ctgtcactgg
     2641 cacttagaat taagatgtaa tccataaatc tgcaaaggag acgctgagca agaacctcac
     2701 aacattgtgt tggtttattt ggtttcacaa ctctgtaatt tctttggttt ttatgcactt
     2761 agagcccaat aggatggctg caggttaagg accttgagtt acagaaacat aatctaagct
     2821 gattcatgag cttggtgcta ggaagtcagt ttccatgtag tctttttcta caaatgaagt
     2881 gttaaggatt ttctctggta gagggagctt gattttattt ataaacatgc ttgcatttct
     2941 tgtcatgttt gtatttcagc aagaacggat ggtaagcatc aaaataaatc tcagcattgg
     3001 ca
//

LOCUS       NM_001318995             976 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus Major histocompatibility complex class II beta chain
            BLB2, (similar to HLA class II, D beta chain) (BLB2), mRNA.
ACCESSION   NM_001318995 NM_001044694 XM_015295014
VERSION     NM_001318995.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
  TITLE     Splenic gene expression profiling in White Leghorn layer inoculated
            with the Salmonella enterica serovar Enteritidis
  JOURNAL   Anim. Genet. 46 (6), 617-626 (2015)
   PUBMED   26358731
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Chen F, Pan L, Chao W, Dai Y and Yu W.
  TITLE     Character of chicken polymorphic major histocompatibility complex
            class II alleles of 3 Chinese local breeds
  JOURNAL   Poult. Sci. 91 (5), 1097-1104 (2012)
   PUBMED   22499866
REFERENCE   3  (bases 1 to 976)
  AUTHORS   Hosomichi K, Miller MM, Goto RM, Wang Y, Suzuki S, Kulski JK,
            Nishibori M, Inoko H, Hanzawa K and Shiina T.
  TITLE     Contribution of mutation, recombination, and gene conversion to
            chicken MHC-B haplotype diversity
  JOURNAL   J. Immunol. 181 (5), 3393-3399 (2008)
   PUBMED   18714011
  REMARK    Erratum:[J Immunol. 2010 May 1;184(9):5415]
REFERENCE   4  (bases 1 to 976)
  AUTHORS   Worley K, Gillingham M, Jensen P, Kennedy LJ, Pizzari T, Kaufman J
            and Richardson DS.
  TITLE     Single locus typing of MHC class I and class II B loci in a
            population of red jungle fowl
  JOURNAL   Immunogenetics 60 (5), 233-247 (2008)
   PUBMED   18389232
REFERENCE   5  (bases 1 to 976)
  AUTHORS   Xu R, Li K, Chen G, Xu H, Qiang B, Li C and Liu B.
  TITLE     Characterization of genetic polymorphism of novel MHC B-LB II
            alleles in Chinese indigenous chickens
  JOURNAL   J Genet Genomics 34 (2), 109-118 (2007)
   PUBMED   17469783
REFERENCE   6  (bases 1 to 976)
  AUTHORS   Li L, Johnson LW, Livant EJ and Ewald SJ.
  TITLE     The MHC of a broiler chicken line: serology, B-G genotypes, and
            B-F/B-LB sequences
  JOURNAL   Immunogenetics 49 (3), 215-224 (1999)
   PUBMED   9914335
REFERENCE   7  (bases 1 to 976)
  AUTHORS   Pharr GT, Dodgson JB, Hunt HD and Bacon LD.
  TITLE     Class II MHC cDNAs in 15I5 B-congenic chickens
  JOURNAL   Immunogenetics 47 (5), 350-354 (1998)
   PUBMED   9510552
REFERENCE   8  (bases 1 to 976)
  AUTHORS   Li L, Johnson LW and Ewald SJ.
  TITLE     Molecular characterization of major histocompatibility complex (B)
            haplotypes in broiler chickens
  JOURNAL   Anim. Genet. 28 (4), 258-267 (1997)
   PUBMED   9345722
REFERENCE   9  (bases 1 to 976)
  AUTHORS   Sung AM, Nordskog AW, Lamont SJ and Warner CM.
  TITLE     Isolation and characterization of cDNA clones for chicken major
            histocompatibility complex class II molecules
  JOURNAL   Anim. Genet. 24 (4), 227-233 (1993)
   PUBMED   8239067
REFERENCE   10 (bases 1 to 976)
  AUTHORS   Xu YX, Pitcovski J, Peterson L, Auffray C, Bourlet Y, Gerndt BM,
            Nordskog AW, Lamont SJ and Warner CM.
  TITLE     Isolation and characterization of three class II MHC genomic clones
            from the chicken
  JOURNAL   J. Immunol. 142 (6), 2122-2132 (1989)
   PUBMED   2493505
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000554.1.
            On Jul 14, 2016 this sequence version replaced gi:974987246.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201358,
                              SAMEA2201376 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               AADN04000554.1     96847-96971
            126-395             AADN04000554.1     97178-97447
            396-677             AADN04000554.1     97534-97815
            678-788             AADN04000554.1     97898-98008
            789-812             AADN04000554.1     98102-98125
            813-976             AADN04000554.1     98219-98382
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="16"
                     /map="16"
                     /breed="Red Jungle Fowl"
     gene            1..976
                     /gene="BLB2"
                     /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
                     S19"
                     /note="Major histocompatibility complex class II beta
                     chain BLB2, (similar to HLA class II, D beta chain)"
                     /db_xref="CGNC:54352"
                     /db_xref="GeneID:101747454"
     CDS             35..826
                     /gene="BLB2"
                     /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
                     S19"
                     /note="major histocompatibility complex class II B; MHC
                     class II beta chain 2; B-LB21 major; MHC Class II beta 1
                     and 2 domains; major histocompatibility class II antigen
                     B-L beta; MHC class II antigen beta chain; B-L beta chain;
                     MHC class II beta 1 domain; MHC class II antigen B-F minor
                     heavy chain; BLB major; B-L beta minor; Bl-Beta II
                     protein; MHC class II B-L beta chain"
                     /codon_start=1
                     /product="uncharacterized protein LOC101747454 precursor"
                     /protein_id="NP_001305924.2"
                     /db_xref="CGNC:54352"
                     /db_xref="GeneID:101747454"
                     /translation="MGSGSVPAAGAVLVALLALGARPAAGTRPSAFFFYGKIGECHYL
                     NGTERVRFLDRQIYNRQQFAHFDSDVGKFVADTPLGERQAEYWNSNAELLENLMNEVD
                     RVCRHNYGILESFTVQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLN
                     GREETERVVSTDVMQNGDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWEPPA
                     DAGRSKLLTGVGGFVLGLVFLALGLFVFLRGQKGRPVAAAPGMLN"
     sig_peptide     35..112
                     /gene="BLB2"
                     /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
                     S19"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 gtgccgggtc ccccatcgtc cggcggcagc agccatgggg agcgggagcg tcccggcggc
       61 gggggccgtg ctggtggcac tgctggcgct gggagcccgg ccggccgccg gcacgcggcc
      121 ctcggcgttc ttcttctacg gtaagatagg tgagtgccac tacctgaacg gcaccgagcg
      181 ggtgaggttt ctggacaggc aaatctacaa ccggcagcag ttcgcgcact tcgacagcga
      241 cgtggggaaa tttgtggccg atacaccgct gggtgagcgt caagctgaat actggaacag
      301 caacgccgag cttctggaga acctaatgaa tgaagtggac agggtctgcc ggcacaacta
      361 cgggattctg gagtccttca cggtgcagag gagcgtggag cccaaggtga gggtctcggc
      421 gctgcagtcg ggctccctgc ccgaaaccga ccgtctggcg tgctacgtga cgggcttcta
      481 cccgccggag atcgaggtga agtggttcct gaacgggcgg gaggagacgg agcgcgtggt
      541 gtccacggac gtgatgcaga acggggactg gacgtaccag gtgctggtgg tgctggagac
      601 cgtcccgcgg cgcggggaca gctacgtgtg ccgggtggag cacgccagcc tgcggcagcc
      661 catcagccag gcgtgggagc cgccggcgga cgcgggcagg agcaagctgc tgacgggcgt
      721 ggggggcttc gtgctggggc tcgtcttcct ggcgctgggg ctcttcgtgt tcctgcgcgg
      781 tcagaaaggg cgccccgtcg ccgccgctcc agggatgctg aattagctgc tgccccgccg
      841 agccgctgca cccgcacccc ccgctctccc ggccgtcgcc tcggctctcc ctcgggctgc
      901 caccgcgtcc gttggagatg tcgccacgat gcacgcttcg tccccatcct aataaacgcg
      961 ctgactttga ccccgc
//

LOCUS       NM_001322804            2731 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus microsomal triglyceride transfer protein-like
            (MTTPL), mRNA.
ACCESSION   NM_001322804 XM_001232866
VERSION     NM_001322804.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KT899704.1.
            On Apr 13, 2016 this sequence version replaced gi:971401807.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KT899704.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201376 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="6"
                     /map="6"
                     /breed="Hy-Line Brown"
     gene            1..2731
                     /gene="MTTPL"
                     /note="microsomal triglyceride transfer protein-like"
                     /db_xref="CGNC:55368"
                     /db_xref="GeneID:769580"
     CDS             30..2675
                     /gene="MTTPL"
                     /note="microsomal triglyceride transfer protein large
                     subunit-like protein"
                     /codon_start=1
                     /product="microsomal triglyceride transfer protein-like
                     precursor"
                     /protein_id="NP_001309733.1"
                     /db_xref="CGNC:55368"
                     /db_xref="GeneID:769580"
                     /translation="MGQWALWGYICLLCCSFLSTAKGSPWVLSFQPGMLYQYHYALAM
                     QLGPVAGLSPSGGWLQAQAVVRIRQLHRDPSGDELLQVQIQDLKAQQKPEGPEGPPMD
                     IALNEEVQSELQKPVFISWSSGKIKALHGDETEGTLITNLKRGVVSLLQLQPHASTIV
                     EEDASGSCQVTYTVSNHSIVKTKDLLSCTKPKMGYASPNKMFGIQWQPSSRSLYVVKD
                     SLLQSVLAEESHMLSLVLRSTTGVKISSRQELKLVSSTPSPAVAAEESLENVLASIEG
                     QHQPLAIASLPFRRGCTHCPSLTAYLKTFDSQQAKMDISKAATTWQFQRFIQMLRSAK
                     KRDVLQLLKRAPEKMLPFVVEAAVAAQSVPALAALSDFLDFSKEPGSLLETFLYAAAF
                     SPRPTKELLRLVLDKLDGKQMAPEVRDTGMVALGSLVGKLCQQQLCGLQEVKHGMETI
                     LTGLRSAEKEHEAVIHLLALGNAQLPSTIPTLLEHAEKGPTAVAAAAISALRQFRAWH
                     ITSEVKRAMRRIFHEKRKSYEKTCRLAAAEILLDNTPLSMDVINILLAAHHLGTEAAT
                     FLLLKVQSSLHANHHPARKIMSDIMRDPRINNYNHFSKAGISSSFSGPLTATKELLST
                     FGLDLLFLEGGFLRKSVSDFSLLSQDWHLRAAQVTIEAQGMESMLGENTLEGEEGPEL
                     TAGMSAIFFDVQLRPIIFFKGYTDLMAKVLLSSGEPTSVVKGNLLLMDHHQVIPLQSG
                     LQAVVKLQGGLGLDISANVDVNIWEQELKTSVDTRGSLTIDFQAELDTPFLHTTLRSQ
                     TEAETSIYFDTILRFSSSPVLMCLQLREDQVPYREVFTISTSAGNQSSTIRKGRQGTV
                     PAQEFALHQANSEMCHLLLTAEEGA"
     sig_peptide     30..98
                     /gene="MTTPL"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 tctcccttcc ccacctcccg gagcccagca tggggcagtg ggcactttgg ggctacatct
       61 gtctgctctg ctgctccttt ctgagcacag ccaaaggcag cccatgggtg ctttccttcc
      121 agccgggcat gctgtaccag taccactatg ccctggccat gcagctgggc cccgtggctg
      181 gcctgtcccc gtctgggggg tggctgcagg cacaggctgt ggtcaggatt cgtcagctcc
      241 acagggaccc cagcggggat gagctgctcc aggtgcagat ccaagacctg aaagcccagc
      301 agaagcctga gggtcctgaa ggtcctccca tggacattgc actgaatgag gaggtgcagt
      361 cagaactcca aaagccagtt ttcatctcct ggagcagcgg gaagatcaaa gccctgcatg
      421 gggatgaaac agaaggcacc ctgatcacca acctgaagcg aggtgttgtc agcctgctcc
      481 agctccagcc ccacgccagc accatcgtgg aggaagacgc ctctgggagc tgccaggtca
      541 catacaccgt gtccaaccac tccattgtaa agacaaaaga tctcctcagc tgcacaaagc
      601 caaaaatggg atatgcctct ccgaacaaaa tgtttggcat ccagtggcag ccctccagca
      661 gaagcctgta tgtggtgaag gacagcctgc tgcagtcggt gctggcagag gagagccaca
      721 tgctgtccct agtcttgagg tccaccactg gtgtcaaaat cagctcaagg caggagctca
      781 agctggtgtc ttcaacgccc agtcctgcag tggcagctga agagagcctt gagaacgtgc
      841 tggctagcat agagggacag caccagcccc tggccatagc cagcctgccc ttcaggaggg
      901 gctgcaccca ctgcccttcg ctgacggcct atctgaagac ctttgatagc cagcaagcca
      961 aaatggacat ctcaaaggct gcaactacgt ggcagttcca gaggttcatc cagatgctgc
     1021 gcagtgccaa gaagagagat gtgctgcagc tgctgaagag agcacctgag aagatgctac
     1081 cctttgtggt ggaggcagcg gtggccgcgc agtcggtgcc agccttggca gctctctcag
     1141 acttcctgga tttcagcaag gagcccgggt ccctactgga gacgttcctc tatgcagcag
     1201 ccttctctcc ccgacctaca aaagagctgc tgcgtttggt gctggacaag ctggatggga
     1261 agcagatggc acccgaggtc cgggacacag ggatggtggc cctgggctct ctggttggaa
     1321 agctgtgcca gcagcagctg tgcggactgc aggaggtgaa acacggcatg gaaaccatcc
     1381 taacagggct gagaagtgcc gagaaggagc acgaggcagt catccacctt ctggccctgg
     1441 ggaatgcgca gctccccagc accatcccca ccctcctgga gcacgcagag aaaggtccca
     1501 ccgccgtggc agctgcagcc atcagcgccc tgcggcaatt ccgtgcctgg cacatcacca
     1561 gcgaggtgaa aagagcaatg aggaggatct tccacgagaa gaggaagagc tacgagaaaa
     1621 catgccgctt ggccgctgca gaaatcctct tggataacac acccttgtcc atggatgtca
     1681 tcaacatcct gctggccgct caccatctgg gaacagaagc agcaacgttc ctgttactga
     1741 aggtgcagag cagcctgcat gccaaccacc acccagcaag gaagataatg agtgacatca
     1801 tgagagaccc tcggataaac aactacaacc acttttcgaa agctggcatc tcctcctcct
     1861 tctcaggacc tctgacagcc accaaggaac tgctctccac cttcgggctg gacctgctgt
     1921 ttttggaggg tgggttcctg agaaagagtg tctccgactt ctcgctgctc agccaagact
     1981 ggcatcttcg tgcggctcag gtcactatag aagcacaagg gatggagtct atgctgggag
     2041 aaaacacctt ggaaggggaa gaggggccag agctcacggc tgggatgtct gccatcttct
     2101 ttgatgtcca gttgcggccc atcatcttct tcaagggata tacagaccta atggccaagg
     2161 ttctgctgag cagtggggaa cccacaagcg tggtcaaagg gaacctcctg ctgatggacc
     2221 atcaccaggt catccctctg cagtctggtc tccaggcagt ggtcaaactc cagggtggac
     2281 tcgggcttga tatctcagcc aacgtggatg tgaacatctg ggagcaggaa ctgaagacca
     2341 gtgtcgacac caggggaagc ctcaccattg atttccaggc agaattggac acccctttcc
     2401 tccataccac cctgaggagc cagacagagg cagagacctc aatctacttc gacaccatcc
     2461 tgagattttc cagtagccct gtgctcatgt gcctgcagct gagggaggat caggtaccct
     2521 atagagaggt cttcaccatc tctacatctg ctgggaacca aagcagcact attcgaaaag
     2581 gccggcaggg cactgtgcct gcccaggagt ttgccctgca ccaggccaac tctgagatgt
     2641 gccacctgct gctgacagca gaggagggag cataggagag gagaccattt gggacagagc
     2701 ttctgcatcc ctgcctgcca tgcaccctgg t
//

LOCUS       NM_001257371            2395 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus NME/NM23 family member 5 (NME5), mRNA.
ACCESSION   NM_001257371 XM_003642079
VERSION     NM_001257371.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
            J.
  TITLE     ESTs from brain and testis of White Leghorn and red junglefowl:
            annotation, bioinformatic classification of unknown transcripts and
            analysis of expression levels
  JOURNAL   Cytogenet. Genome Res. 111 (1), 79-87 (2005)
   PUBMED   16093725
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU273418.1, AADN04000142.1, CN228756.1 and CN235652.1.
            On Feb 11, 2016 this sequence version replaced gi:383387817.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU273418.1, CO635606.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201360, SAMEA2201361
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                BU273418.1         1-60
            61-70               AADN04000142.1     732083-732092
            71-88               BU273418.1         71-88
            89-710              CN228756.1         1-622
            711-937             CN235652.1         291-517
            938-2395            AADN04000142.1     739902-741359
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="13"
                     /map="13"
                     /breed="Leghorn"
     gene            1..2395
                     /gene="NME5"
                     /note="NME/NM23 family member 5"
                     /db_xref="CGNC:52876"
                     /db_xref="GeneID:426732"
     misc_feature    71..73
                     /gene="NME5"
                     /note="upstream in-frame stop codon"
     CDS             191..829
                     /gene="NME5"
                     /EC_number="2.7.4.6"
                     /note="non-metastatic cells 5, protein expressed in
                     (nucleoside-diphosphate kinase)"
                     /codon_start=1
                     /product="nucleoside diphosphate kinase homolog 5"
                     /protein_id="NP_001244300.1"
                     /db_xref="CGNC:52876"
                     /db_xref="GeneID:426732"
                     /translation="MQMLMPEPQIFVEKTLALIKPDVVAKEEEIEDLILRSGFMIVQK
                     RKLQLSPEQCSIFYADQYGKMFFPNLAAYMSSGPSVAMILARHRAVSYWKELLGPSNS
                     IKARMTHPHSLRAIYGTDDLRNGLHGSLSTSSAEREIRFMFPEVISEPIPAGQRARDY
                     LNLHVNPTLLAGLTALCKEKPADPMTWLADWLMEHNPNKPRLQHHVTEEDQE"
ORIGIN      
        1 cccgccgcga ggggcgcgga ggccatcttg tggccgctgt gcccgctgcc cgcccggccc
       61 cgtcgtcgcc tagcaacggg gaggtgcgcg gcatggcggc ggggcgggcg cagcggggcc
      121 gctggcggcc gtgactggga gctgtggttc caggacaaag aagcacgcgg gttctaattc
      181 agaagcaaag atgcagatgc taatgccaga acctcagatt tttgtagaaa aaacactggc
      241 tctcatcaaa cctgacgttg tagctaagga ggaagagata gaggatctca tcctcagatc
      301 tggattcatg attgttcaga aacggaagct ccagttaagc ccagagcaat gtagcatctt
      361 ttatgcagac cagtatggaa aaatgttttt tcctaatcta gcagcctata tgagctctgg
      421 accttcagtt gccatgattc ttgccaggca tcgtgcagtc tcatactgga aggaattgct
      481 tggaccatca aacagcataa aagctaggat gactcaccct cacagtttaa gagcaatcta
      541 tgggactgat gatctgagga atggacttca tggcagtctc agcacttcct cagcagaaag
      601 agaaattcga ttcatgtttc cagaagtgat ctcggagcca attccagctg gacaaagagc
      661 tagagattat ttgaatcttc atgtaaatcc tacattacta gctgggctca cggcactttg
      721 taaagagaag ccagcagatc caatgacatg gcttgctgac tggctgatgg aacacaaccc
      781 taacaaacct aggttacaac atcacgtcac tgaagaagac caggagtaag atctcagtgg
      841 aaatcacctc aagtattcca agttacagat ggatgtcatc gttttcactg tatccctggg
      901 gaattagtat tatttgaagt aaatgttatt gtcataacta ctctcatgtc tttatggaat
      961 ccttatcctt actctttgcc aggatttaac agctgtagta acttttctat tgacttagag
     1021 agtgtagact tgcatgataa atttactgtg tcaggtgatt agaaaaggat gaaattatct
     1081 tcaggtgtta cctgaactgc tattttctct aattgtcttg atgtggctgc ctggggaaaa
     1141 taaaatcatt aagacaatca cagattccca agtgacattc agctggtcta tactctgtta
     1201 agcagacttt tttctagcac ttttttagga gacacaaatt gcattctggg agaaggtacc
     1261 tgaatgtaac ttagatacaa agggcatgtt accaacctga gaaatactgc tgttggctgc
     1321 atcactgagc tatggtaact cctgaagtgg tgacttgaga ctgttgtatt ttgacagtat
     1381 aatttgaaat tctgaattaa agccatcttg aatgtacatt ttccatctca gtgacaaaag
     1441 gcacagtggt tataaatcag tctctaattt ctattagaaa tcacaggagg gtgtatttta
     1501 gggactaatg ctgatattaa ttccaatatc tgtttaaaga aaggtgctta aatgcaacag
     1561 ctcatagtag gggtggtttt tttgtgctca tctactctta aaaggtatgc tgatttctgt
     1621 tgtttccctt gtattgcttt ttacatttga aatttactgt gttttatttg acagtttcaa
     1681 gggggtgggt taggggctgt gctgttcaac aggcagtggt taatcctgta ctctatttct
     1741 gaagtaattg gacaggtttg ggggaggata ggggactgtt tttcttaaaa gttatatttg
     1801 cgctgttaac ttcgaacttt gtatcttgtg gttttcgtgg attgcatgga gaaagcattg
     1861 gtcttacagc tctgagcctt gggcagactc atactaaaac aaagtcatag tttgctttat
     1921 gacaaacctt gcttctcaaa cttgaataat tagcagcaac ttcagtcaat agtctgtaac
     1981 attaaacttc taaattaact gtgcatcttc taagagaata aatccacact tgccacttca
     2041 gataacccat ctctacgaaa acaaaacaaa aaaacacaac agcctaacac tcagatatga
     2101 agaaagaata acaaggtcat tagaaataca gcaagcagat ctcttcataa ctaatttctt
     2161 ttgcgtgtgt ttattgttcc ctacacacgt ctgattgctg caattatagg acagctgtgc
     2221 tttgtggttt cctgttagcc aaaccaaaac acttctattt tgaacttgcc agaagctaaa
     2281 agccaatgga ttcacaatgt tttctccttc atttttgtta gttactgtgg cgtttgctta
     2341 cttagttact tagatgtgtt atagtttgac aataaatatt tcctttatgt tatgg
//

LOCUS       NM_001292086            6644 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus LEO1 homolog, Paf1/RNA polymerase II complex
            component (LEO1), mRNA.
ACCESSION   NM_001292086 XM_001232677
VERSION     NM_001292086.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU230505.1, BU260848.1, CN232844.1, BU431855.1 and AADN04000364.1.
            On Feb 11, 2016 this sequence version replaced gi:638280130.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-611               BU230505.1         1-611
            612-696             BU260848.1         576-660
            697-1451            CN232844.1         1-755
            1452-2081           BU431855.1         12-641
            2082-6644           AADN04000364.1     1126269-1130831
FEATURES             Location/Qualifiers
     source          1..6644
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="10"
                     /map="10"
                     /breed="Leghorn"
     gene            1..6644
                     /gene="LEO1"
                     /note="LEO1 homolog, Paf1/RNA polymerase II complex
                     component"
                     /db_xref="CGNC:55225"
                     /db_xref="GeneID:769405"
     CDS             17..1990
                     /gene="LEO1"
                     /note="RNA polymerase-associated protein LEO1-like; Leo1,
                     Paf1/RNA polymerase II complex component, homolog"
                     /codon_start=1
                     /product="RNA polymerase-associated protein LEO1"
                     /protein_id="NP_001279015.1"
                     /db_xref="CGNC:55225"
                     /db_xref="GeneID:769405"
                     /translation="MADMEELFGSDADSEAEQKDTDSGSDSDSDQENAGSGSNASGSD
                     SEQDDEREAAKPSNKELFGDDSEDEGASHHTGSDNHSERSYNRSEASGHSEHEDNDQS
                     DVDQHSASEAAHDDEEDERGHGSDEGSHHSEGDGSEKAHSEDEKWGKEDKSDQSDDEE
                     RQQNSDDEERQQNSDDEEKAQNSDEDERPQMSDDEERLQNSDEEKMQNSDDEERPQVS
                     DEEKMQNSDDDERAQHSDEEKMQNSDDDERAQRSDEEEQEHKSGESARGSDSEDEVLR
                     MKRKKPIASDSEADSDTEGQKEHADVMDLFGGADDISSGSDGEDKPPTPGQPIDENGL
                     SQEQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDE
                     EMLDEEGRTRLKLKVENTIRWRMRRDEEGNEIRESNARIVKWSDGSMSLHLGNEVFDV
                     YKAPLQGDHTHLFIRQGTGLQGQAVFRTKLTFRPHSTDSATHRKMTLSLADRCSKTQK
                     IRILPMAGRDPESQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRY
                     EEEDEGDDAISLAAIKNRYKGGIREERARIYSSDSDEGSDEDKTQRLLKAKKLTSDEE
                     GEPSGKRKAEDDDKASKKHKKYVISDEEEDDDD"
ORIGIN      
        1 ggcgcgtgca gcagccatgg ccgacatgga ggagctgttc ggcagcgacg ccgactcgga
       61 ggccgagcag aaagataccg attccggctc agactccgac tctgaccagg agaacgcggg
      121 ctccggcagc aacgcctcgg gcagcgacag cgagcaggac gacgagcggg aggcagcaaa
      181 gcccagcaac aaggagctgt tcggagacga cagcgaggat gaaggagcct cccatcacac
      241 gggcagcgac aaccactccg agaggtcgta caatcgctcc gaagcttcgg ggcactctga
      301 gcacgaagac aacgatcagt cggacgtgga ccagcacagc gcttcagaag cggctcatga
      361 cgatgaggag gacgagcggg ggcacggctc tgatgagggc agtcaccatt ctgagggaga
      421 tggttcagaa aaggcccatt cggaggatga gaagtggggc aaggaggaca aaagcgatca
      481 gtcagatgat gaggagcgac agcagaactc tgatgatgag gagagacagc agaactcgga
      541 cgatgaggag aaagcacaga actctgatga agatgagagg ccgcagatgt ctgacgatga
      601 ggagaggctc cagaactcgg atgaggagaa gatgcagaac tctgatgatg aggagaggcc
      661 gcaggtgtcg gacgaggaga agatgcaaaa ctcagatgat gatgaaagag cccagcactc
      721 tgatgaggag aagatgcaga actctgacga tgacgaaagg gcccagcgct ccgatgagga
      781 ggagcaggag cataaatctg gagagtctgc aagaggcagc gacagtgaag atgaagtcct
      841 gcgaatgaag cgaaagaaac caattgcatc agattcagag gcggacagtg atacagaagg
      901 ccagaaggaa cacgcagacg tcatggacct gtttggagga gcagatgaca tttcttcggg
      961 aagcgatggg gaagacaagc cgccaactcc aggacagccc attgatgaga atgggctgag
     1021 ccaagaacag caggaggaag agcctattcc agagacaaga atagaggtag aaataccaaa
     1081 agtaaacaca gacttgggta acgatttgta ttttgtgaag ctgcccaact tcctcagtgt
     1141 ggagcccaga ccatttgatc cccagtatta tgaggatgaa tttgaagatg aggagatgct
     1201 tgatgaggaa gggagaacga gattaaaact taaggtagaa aacacaatac ggtggcggat
     1261 gcggcgagat gaggaaggga atgagattag agaaagcaat gcccggatag tcaagtggtc
     1321 ggatggaagc atgtctctcc acttgggaaa tgaggtcttt gatgtgtaca aggcaccgct
     1381 gcagggagat cacacccatc tgtttatcag acaagggaca ggtctgcaag gacaggctgt
     1441 tttcaggaca aagttaacct tcaggccaca ctctacagac agtgccacgc acaggaagat
     1501 gactctgtct ctggcagata ggtgttcaaa gacccagaaa attcgtattt tgccaatggc
     1561 gggtcgtgat ccggagtctc agcgcacaga aatgattaag aaagaagagg agagattaag
     1621 agcttccatt cgcagagaat ctcagcagcg aagaatgagg gagaagcagc atcagcgtgg
     1681 tctgagtgct aattacttag aacccgatcg ctatgaagaa gaggacgagg gagacgatgc
     1741 gatcagtcta gcagctatca aaaacagata caaaggtggc atcagagagg aacgtgctag
     1801 aatctattct tcagacagtg atgaaggctc agatgaagat aaaacacaaa gactactcaa
     1861 ggcaaagaaa cttactagtg atgaggaagg ggagccttct ggaaagagaa aagcagagga
     1921 tgatgacaaa gcaagtaaga agcataagaa gtatgtcatc agtgatgaag aggaagatga
     1981 tgatgattaa cattgaggga gcactgaagt tgctttctat atatacatat ttatatataa
     2041 attgtacagt tctcttacag caaagatgta agtagccata ttggggttat tttgataaag
     2101 gagaattcca ttgaaatttg tgtttctggt gtgaataaaa gttggtttct ttctttttac
     2161 tttctcatat ttttacatct tatcttactg cagcagctgc tgcaatgggg atcatcatag
     2221 catcagtttt taaatcttgt acagtacatt tcagttttga aatctatagt acaaactggt
     2281 tgtacaactg aatagaactg aataaatcag tggtcttact gagttcatta ggagaaatca
     2341 taatcttcat atagaatgct taaattataa gttttctcag ccaggttatg gagatgaagg
     2401 ttaccatttg tacagaagat ttggaatatc atatgagtgg cacaacaccg tactgttttt
     2461 tcctgcactt tcctattacg tactgctggc tgtagatggt acattactgt gctgttatat
     2521 tttgatattt ttgactgaag gtatttctta tcatgtctac tctgagtaaa ctgtgaagtt
     2581 cctgtagtta gaatagtaaa ccaaccacaa gatgtttatt ttttcataaa ttgaacgaaa
     2641 atccacctct catctgagcg ttagcattaa taagaataat cacattagcg atggaactgt
     2701 caggatagaa gcacttgttt atacaaaacc aacgaatttc tgcaagttca tgaaaggctt
     2761 ctttaacaac tgcagtgagc cgccctgtga atacatatcc tgctaatagc attttgtaat
     2821 ctcatacaag ccttatgatg cattttccta ttgttctggg ttggctgaaa agacagcgga
     2881 ggagaatatt gtggacagag ttattgctgc ttttatgcta tttttaaaca ccttatttga
     2941 ttatgcaaat agcattgcaa aatgaggaga ggctacaaga aatgtctcat cttttccact
     3001 ctttaagatt atgtttccca cgtgtagttt cccttgttgg tgagatagca tttccatgtt
     3061 atctatgttg ttttttaact gccttttcac atagtcctag aaagcttgtg acttcatgga
     3121 ggtagcagga agaaagcaga aagcatagct taatgcctct ttaaatgcat tgagcggtgc
     3181 catggaaagt ttgctgagtg gatttatgtt tcgtaagata aagtagctta cagttatgta
     3241 agaataaatg ttactcatct ctctcctgcc cagatgaatt atgcttttct ataaaaactg
     3301 ttgagttaca gcttttaacc tggctgtctt gcctttgaaa tgtgtaatta ggcaaacagt
     3361 ttactgaagt actctacctc catttttctt gcctggaagg tgtgggaagc attctagctg
     3421 cagaggcaca gagctctgca cgcattaata tattctgctc agcagctgac tgcagtgtag
     3481 acacttgcaa atatgaaaac aaagtgaaaa atgtctactc tgaagtctga gtgcctgaga
     3541 agctgttctt ttgttgttgt tgttgttgtt tttgtacttg tttctaagag ttcctgcctc
     3601 tcttccctgt gcagataaaa cctttctcca tctgctccaa ttttgagtaa tcctcttagg
     3661 ttagacctct gctgggagtc tggctcctca catgtggtta cctgcttttc tgttgtaacc
     3721 tgctcaggaa gaagccagct gtagaaaaag ggagttgttt cttatgctat gtggttgcta
     3781 gactttcgtg tcaaagtctc ccagatacct cttgagcagc aatgcaaagt gtatggaaac
     3841 tcaccaccat ttcactgctg atgtgtttgc ttaatgtcag tttaattaaa gcattggtta
     3901 cttttactat attccaaagg gtgaaaatgt tttaatcact cttacaggtt tgatgctgac
     3961 taagccttta cttggtaagt gggctacttt agcttccaaa aaggaggctt ttgtggattt
     4021 aaaagattaa aaggagtgtt tttttctact gtcttctttt gtaaattgct cttctaaagt
     4081 cttattaaaa catagaattt tagaaagtgt tttctcagcc taaattggtt taacaatcac
     4141 cttttaatta aagtcacttg aacgaacttt gtcttatcca tagtatttgt tgcttgtgag
     4201 tgtggtgtac agttctgttt cactcatagg cagttttttt gctctccctt ttcccagcct
     4261 ccaagtatgt gacaattact tggaattgtt tttcttaccc aaatcagaaa tatgaagctg
     4321 gaactaaagt gcgtaaggag aaggaaagaa caagtaggtg aactgtattt acttttgtac
     4381 agactggcca gagtacttct tccagaaagg ttatgatttg gacaatttcc aaaaataaaa
     4441 atctgtttga agagctgata atgagctgag ttttagattt tctggctagt ggtagagtgt
     4501 aggatcagtt gtcttgaaac catcactgaa aggtgttcct agctatatag ttttgttgtt
     4561 tcaggtatat tgttcaactg tacgcttgcc aattgcagaa ctggagtttt ctttctagca
     4621 ctgagtaaca ttctcttcca tccttgccct gcaagttgac accattttca tgctagaggc
     4681 aagcctgatg gatcaggggc tgccctcaga agggtgcagc tgcccatgca gtccttgtct
     4741 ctttctagca gcaggtttgg caatacctgc ctggcttagc tcagagtgaa tttgctaaac
     4801 tcccaggaaa ctgattttct gctgtgctgg agttttgtgc cataggccag cagaactact
     4861 tcattggcca tgtgaacaag gtagccagct cagtaagttg gcctggtcat gaggacatca
     4921 ggggatatgg cagaaggatg ctctctttgg cagaggtgta aacttttact tgactgcctt
     4981 ttgaaaactt agcttgaccc tgcagaaggt agttgatagt tttctactgc tgtagctgcc
     5041 tcagctggca cactggtgtg tcggttgtga ctggaggtgg tgcaagaggt agaacaggac
     5101 agttctgtgt gtggcagcaa gttttaactc ggctcagatg tgaaactgca gccacaggaa
     5161 tgtgttaaac atgagatggt gactttccag tgaagtcata ggtatttatt tctcagccag
     5221 tgggcatagg agcccatggt gtcggcccat tctaatggag tgcttttctc taacagctta
     5281 atgctgctgg tcaagctgag tgttactgag tgcatagaga tggtcacatg ggaaagaaag
     5341 agagaatttt gtttctgata aatgttcttt taatattagt tataagaagt tttacatatt
     5401 agatttgtga aattcagcta cgctgttgta acacttagac acttgcctgt ggcttgactt
     5461 ggaagtgctt gtggagagca atgtgactaa cacctcgtgt tgcctagtga tgccctttca
     5521 cttgagctgg ggttttttta gtgcctgtct ggacatgaaa gacttagaga aaagctgcaa
     5581 acaagtgttg actgctagct tgtatcttta attgctttaa aactcgtggg cattctcatg
     5641 aattatataa gcttaagtag ttgagaaaat gacataaaat taagtaaatc cctgctgaaa
     5701 tcattctcag acagaatttg acaaaaaaaa atcctttcac aagtcttttt tgacattttt
     5761 tttctaaagg attttttatg gtttcaagac tggactgatg cttgggggga aaaaggagtt
     5821 actgaagtgg aagcttaact agaaagtttt tatttgttgc tttgttttct ccattatttc
     5881 gtgaagaatt gagagactgt agagccagtt taccaacaaa agtaacctca tgtcttttga
     5941 gttaggatga aattttctgg gaaagaatgg cattcctgca gttattgata gccatggaat
     6001 catatataca ctgtattctt catatattgt caattaaaca taaataaaat cctaggaaat
     6061 ggtaaaagca tcaactatca caccctcttt tttctatctt atgactgaat taactttctg
     6121 tgttttcatg cttttctcct caaaacactt cataatgtaa ctggaaaaga cacactaatc
     6181 ctagcgtgat gatctgtcag ttaccttgtg ggttttttcc tctttgtctg tcagtgtaaa
     6241 ggtgtatgat agacattctg tacagaacgg gctcttagaa caggatttgc tgttgagctc
     6301 tacagtaaac cttttatttt aattttgcat ggatgctcaa ggaccactct cattttcata
     6361 tgtaaaggaa ataaacttac gtttttggca acggcagtaa tcagcatctt tccttcaggt
     6421 gtttagtaca cttgtacata gtgatcgtgt ttgggaagtt gtcctgcttg gttggctgag
     6481 ggttgtattg tgagatgtgt aacctactat ctctgtaagc ccagtgctgt tgctcgttgt
     6541 atttaatgcc agcagcatca agttttgttt acaaatccgg aatcaggtaa ctgtatttaa
     6601 actatgtcag cttgtcatct cccagtctta tttttcagct taaa
//

LOCUS       NM_204766               5992 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus myosin, heavy chain 15 (MYH15), mRNA.
ACCESSION   NM_204766
VERSION     NM_204766.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 5992)
  AUTHORS   Rossi AC, Mammucari C, Argentini C, Reggiani C and Schiaffino S.
  TITLE     Two novel/ancient myosins in mammalian skeletal muscles: MYH14/7b
            and MYH15 are expressed in extraocular muscles and muscle spindles
  JOURNAL   J. Physiol. (Lond.) 588 (PT 2), 353-364 (2010)
   PUBMED   19948655
  REMARK    GeneRIF: Chicken ventricular MYH is the ortholog of mammalian MYH15
REFERENCE   2  (bases 1 to 5992)
  AUTHORS   Garriock RJ, Meadows SM and Krieg PA.
  TITLE     Developmental expression and comparative genomic analysis of
            Xenopus cardiac myosin heavy chain genes
  JOURNAL   Dev. Dyn. 233 (4), 1287-1293 (2005)
   PUBMED   15986480
REFERENCE   3  (bases 1 to 5992)
  AUTHORS   Ching YH, Ghosh TK, Cross SJ, Packham EA, Honeyman L, Loughna S,
            Robinson TE, Dearlove AM, Ribas G, Bonser AJ, Thomas NR, Scotter
            AJ, Caves LS, Tyrrell GP, Newbury-Ecob RA, Munnich A, Bonnet D and
            Brook JD.
  TITLE     Mutation in myosin heavy chain 6 causes atrial septal defect
  JOURNAL   Nat. Genet. 37 (4), 423-428 (2005)
   PUBMED   15735645
REFERENCE   4  (bases 1 to 5992)
  AUTHORS   Srikakulam R and Winkelmann DA.
  TITLE     Chaperone-mediated folding and assembly of myosin in striated
            muscle
  JOURNAL   J. Cell. Sci. 117 (PT 4), 641-652 (2004)
   PUBMED   14709723
  REMARK    GeneRIF: The folding and assembly of striated muscle myosin was
            analyzed by expressing a GFP-tagged embryonic myosin heavy chain
            (GFP-myosin) in post-mitotic C2C12 myocytes using replication
            defective adenoviruses.
REFERENCE   5  (bases 1 to 5992)
  AUTHORS   Yazawa S, Obata K, Iio A, Koide M, Yokota M, Sasaki S, Kagami H and
            Ono T.
  TITLE     Heart-selective expression of the chicken FK506-binding protein
            (FKBP) 12.6 gene during embryonic development
  JOURNAL   Dev. Dyn. 226 (1), 33-41 (2003)
   PUBMED   12508222
REFERENCE   6  (bases 1 to 5992)
  AUTHORS   Machida S, Noda S, Furutani Y, Takao A, Momma K and Matsuoka R.
  TITLE     Complete sequence and characterization of chick ventricular myosin
            heavy chain in the developing atria
  JOURNAL   Biochim. Biophys. Acta 1490 (3), 333-341 (2000)
   PUBMED   10684978
REFERENCE   7  (bases 1 to 5992)
  AUTHORS   Camoretti-Mercado B, Dizon E, Jakovcic S and Zak R.
  TITLE     Differential expression of ventricular-like myosin heavy chain mRNA
            in developing and regenerating avian skeletal muscles
  JOURNAL   Cell. Mol. Biol. Res. 39 (5), 425-437 (1993)
   PUBMED   8173588
REFERENCE   8  (bases 1 to 5992)
  AUTHORS   Watanabe B.
  TITLE     Amino-acid sequence of the short subfragment-2 in adult chicken
            cardiac muscle myosin
  JOURNAL   Biol. Chem. Hoppe-Seyler 373 (10), 1045-1054 (1992)
   PUBMED   1418675
REFERENCE   9  (bases 1 to 5992)
  AUTHORS   Bisaha JG and Bader D.
  TITLE     Identification and characterization of a ventricular-specific avian
            myosin heavy chain, VMHC1: expression in differentiating cardiac
            and skeletal muscle
  JOURNAL   Dev. Biol. 148 (1), 355-364 (1991)
   PUBMED   1936571
REFERENCE   10 (bases 1 to 5992)
  AUTHORS   Stewart AF, Camoretti-Mercado B, Perlman D, Gupta M, Jakovcic S and
            Zak R.
  TITLE     Structural and phylogenetic analysis of the chicken ventricular
            myosin heavy chain rod
  JOURNAL   J. Mol. Evol. 33 (4), 357-366 (1991)
   PUBMED   1774788
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB032197.1.
            On Feb 3, 2016 this sequence version replaced gi:45382108.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB032197.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5992              AB032197.1         4-5995
FEATURES             Location/Qualifiers
     source          1..5992
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..5992
                     /gene="MYH15"
                     /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
                     /note="myosin, heavy chain 15"
                     /db_xref="CGNC:49365"
                     /db_xref="GeneID:395534"
     misc_feature    35..37
                     /gene="MYH15"
                     /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
                     /note="upstream in-frame stop codon"
     CDS             50..5863
                     /gene="MYH15"
                     /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
                     /note="myosin, heavy chain 6, cardiac muscle, alpha;
                     ventricular myosin heavy chain 1; cardiac muscle isoform"
                     /codon_start=1
                     /product="myosin heavy chain, cardiac muscle isoform"
                     /protein_id="NP_990097.1"
                     /db_xref="CGNC:49365"
                     /db_xref="GeneID:395534"
                     /translation="MMDMTEFGEAAPFLRKSEKELMMLQTVAFDGKKKCWVPDDKKAY
                     VEAEITESSGGKVTVETTDGRTMTIKEDDVQSMNPPKFDMIEDMAMLTHLNEASVLYN
                     LRKRYSNWMIYTYSGLFCVTINPYKWLPVYKSEVVAAYKGKRRSEAPPHIFSIADNAY
                     HDMLRNRENQSMLITGESGAGKTVNTKRVIQYFATVAALGEPGKKSQPATKTGGTLED
                     QIIQANPALEAFGNAKTLRNDNSSRFGKFIRIHFGTTGKLSSADIEIYLLEKSRVIFQ
                     QPGERDYHIFYQILSGKKPELLDMLLVSTNPYDYHFCSQGVVTVDNLDDGEELMATDQ
                     AMDILGFVPDEKYGAYKLTGAIMHFGNMKFKQRPREEQAEADGTESADKAAYLMGINS
                     SDLVKGLLHPRVKVGNEYVTKGQSVEQVLYAVGALSKAVYDRMFKWLVVRINKTLDTK
                     LPRQFFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYKKEGIEW
                     VFIDFGMDLQACIDLIEKPLGILSILEEECMFPKATDMTFKAKLYDNHLGKSPNLQKP
                     RPDKKRKYEAHFELIHYAGSVPYNIIGWLEKNKDPLNETVVGIFQKSSNKLLASLFES
                     YVGADSADQGGEKKRKKGASFQTVSSLHKENLNKLMTNLRSTAPHFVRCIIPNESKTP
                     GEMDAFLVLHQLRCNGVLEGIRICRKGFPNRVLYADFKQRYRILNPGAIPEDKFVDSR
                     KAAEKLLASLDIDHNQYRFGHTKVFFKAGLLGHLEEMRDERLAKILTMIQARARGRLM
                     RIEFQKIVERRDALLVIQWNIRAFMAVKNWPWMKLFFKIKPLLKSAETEKEMANMKEE
                     FLKLKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQAEQDTLADAEERCDLLIKSKI
                     QLEAKVKELTERVEDEEEMNSELTSKKRKLEDECSELKKDIDDLEITLAKVEKEKHAT
                     ENKVKNLTEEMATLDENISKLTKEKKSLQEAHQQVLDDLQAEEDKVNTLSKAKVKLEQ
                     QVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESVMDLENDKLQMEEKLKKKEFEM
                     SQLNSKIEDEQAIVMQLQKKIKELQARIEELEEELEAERAARAKVEKQRSDLARELEV
                     LSERLEEAGGATAAQLEMNKKREAEFLKLARDLEEATLHYEATAAALRKKHADSVAEM
                     GEQLDNLQRVKQKLEKEKSELKMEVDDLTSNMEQTVKGKANAEKLCRTYEDHLNETKT
                     KLDEMTRLMNDLTTQKTKLQSENGEFVRQLEEKESLISQLSRGKTSFTQQIEELRRQL
                     EEETKSKNALAHALQAARHDCDLLREQYEEEQEAKAELQRALSKGNAEVAQWRTKYET
                     DAIQRTEELEDAKKKLAARLQEAEEAIEAANAKCSSLEKTKHRLQNELEDMMIDLEKA
                     NSAAASLDKKQRGFDKIINDWKQKYEESQAELEASQKEARSLSTELFKLKNAYEETLD
                     HLETLKRENKNLQEEISDLTNQISEGNKNLHEIEKVKKQVEQEKSEVQLALEEAEGAL
                     EHEESKTLRFQLELSQLKADFERKLAEKDEEMENIRRNQQRTIDSLQSTLDSEARSRN
                     EAIRLKKKMEGDLNEMEIQLSHANRHAAEATKSARGLQTQIKELQVQLDDLGHLNEDL
                     KEQLAVSDRRNNLLQSELDELRALLDQTERARKLAEHELLEATERVNLLHTQNTSLIN
                     QKKKLEGDISQMQNEVEESIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMK
                     KNMEQTIKDLQKRLDEAEQIALKGGKKQIQKLESRVRELENELENELRRNSDAQKGAR
                     KFERRIKEVTYQSEEDKKNLARMQDLIDKLQLKVKSYKHQAEEAEAQANLYLSKYRKQ
                     QHDLDDAEERAEIAESQVNKLRSKSRDIGMKKVHEEE"
ORIGIN      
        1 tctttgactt tggcctcctt gagctgtact accttgaagc cttgccaaga tgatggacat
       61 gacggaattt ggggaggctg ctcccttcct ccgaaagagc gagaaggagc tgatgatgtt
      121 acaaactgtc gccttcgatg ggaaaaagaa atgttgggtt cctgatgaca agaaagctta
      181 cgttgaagct gaaattacag aaagcagtgg tggcaaagtg actgttgaga caacagatgg
      241 acggaccatg actataaaag aagatgacgt gcagtcaatg aaccctccca aattcgacat
      301 gattgaggac atggctatgc tgacccatct gaatgaggca tctgtgttgt acaacctgag
      361 gaagcgctac agcaactgga tgatttatac ctactcgggc ttgttctgcg tgactataaa
      421 cccctacaag tggctgcctg tctacaagtc ggaggttgtt gctgcctaca aaggcaagag
      481 gcgctcagaa gcccctcctc acatcttctc cattgctgat aacgcatacc acgacatgct
      541 gcgtaatcgg gaaaatcagt caatgctaat cactggagaa tccggtgctg gcaagactgt
      601 caacacaaaa agggtcatcc agtactttgc cacagtggca gccctgggtg aacctggtaa
      661 aaagagtcaa cctgctacca aaactggggg aaccttggaa gatcaaatca ttcaagcaaa
      721 cccagcccta gaagcttttg gaaacgccaa aaccctgaga aatgacaact cctcacgttt
      781 tggtaaattt atccgaatcc attttggaac cacaggcaag ctgtcatctg ctgacattga
      841 gatctattta ctggagaaat cccgagtgat ttttcagcaa ccgggtgaga gagactatca
      901 catcttctac cagatcttat caggaaagaa accagagttg ctggatatgt tattggtctc
      961 caccaaccca tatgactacc acttttgctc ccaaggagta gttacagtgg acaacttgga
     1021 tgacggagaa gaactgatgg caacagatca agccatggac attttaggat ttgtgccaga
     1081 tgagaagtat ggtgcctaca agctcacagg tgccattatg cactttggga acatgaaatt
     1141 caaacaacga cccagagaag agcaggcaga ggctgatggc actgaaagtg ccgacaaagc
     1201 tgcctaccta atgggaatca actcctctga tttggttaag ggcttattac accctagagt
     1261 gaaagttgga aatgagtatg tgaccaaagg tcaaagtgtt gaacaggttt tgtatgctgt
     1321 tggggcctta tccaaggcag tgtatgatcg aatgttcaag tggctggtgg tccgtatcaa
     1381 caaaacactg gacactaagc tgccaagaca gttcttcatt ggagtcctgg acattgctgg
     1441 ctttgaaatc tttgatttca acagctttga gcaactctgc atcaattaca ctaatgagaa
     1501 actgcaacag tttttcaatc atcacatgtt tgtcctcgag caagaagaat ataaaaaaga
     1561 aggcattgaa tgggtattta ttgattttgg catggacctg caggcctgta ttgatctaat
     1621 tgagaagcca ctaggaatcc tgtctatcct tgaagaagaa tgtatgttcc caaaagctac
     1681 agatatgacg ttcaaagcca aactttacga caaccatctt ggcaagtcac ctaacttgca
     1741 gaagcccagg cctgataaga aaaggaaata tgaagctcac tttgaactta ttcattatgc
     1801 tggctcagtt ccctataaca tcattgggtg gcttgagaag aacaaagacc cacttaatga
     1861 aactgtagta ggtattttcc aaaagtcgtc caacaagctc ctggcaagcc tgtttgaaag
     1921 ctacgttggt gctgacagtg ctgaccaggg tggagaaaag aaacgcaaga aaggtgcttc
     1981 ttttcagaca gtgtcctcat tacacaagga aaatttaaat aaactaatga ctaacctaag
     2041 atctacagcc cctcactttg tacgatgcat tattcccaac gaatcaaaaa caccaggtga
     2101 aatggatgct ttccttgtct tgcatcagct ccgctgtaat ggtgtcctgg aaggcatccg
     2161 catttgccgt aagggtttcc caaacagagt gctttatgct gactttaaac aaaggtaccg
     2221 cattctgaac ccaggtgcaa tcccagagga caagtttgtg gatagcagaa aagctgccga
     2281 aaaactactg gcatctttag atattgacca taaccaatat cgtttcgggc atactaaggt
     2341 gttcttcaag gctggtctgt tgggccacct agaagaaatg agggatgaga gacttgcaaa
     2401 gatcctaaca atgatccagg caagggcacg tggcagactg atgaggatcg agttccagaa
     2461 gatagtggag cgcagggatg cccttcttgt aattcagtgg aatatccgtg cctttatggc
     2521 tgtgaagaat tggccctgga tgaagctttt ctttaagatc aaacctcttc tgaagtctgc
     2581 agaaactgaa aaagagatgg ccaatatgaa ggaagagttc ttgaaattga aggaggccct
     2641 ggaaaaatct gaagcaagga gaaaggaact tgaagagaaa caagtctctt tagttcagga
     2701 aaaaaatgat ttgctattgc agctccaagc tgagcaagac actctggcag atgctgagga
     2761 gcgatgcgac ttgttgatta aatccaagat tcagctggag gccaaagtca aagagctgac
     2821 agagcgagtt gaggatgagg aagagatgaa ttctgagctg acatccaaaa agagaaaatt
     2881 ggaagatgaa tgctctgagc tcaagaaaga tattgatgat cttgaaataa cacttgcaaa
     2941 agtagagaaa gagaagcatg ctactgaaaa taaggtgaaa aatctgacag aagaaatggc
     3001 gactcttgat gagaacatca gcaaacttac taaggagaag aagtccttgc aggaagctca
     3061 tcagcaagtt ctggatgacc ttcaagcaga ggaagacaag gtcaacacac tgagcaaagc
     3121 taaagtgaaa ctggaacagc aagtggatga tcttgagggc tcgcttgagc aagagaagaa
     3181 agtgaggatg gatctagaaa gagcaaaacg caaactggaa ggagatttga agctgaccca
     3241 agagagtgtc atggacttgg agaatgataa gttgcaaatg gaagaaaagc tgaaaaagaa
     3301 agagtttgaa atgagccaat tgaattccaa gatagaagat gaacaagcta ttgtaatgca
     3361 gctgcagaag aagataaagg aactacaggc tcgtatagaa gagctggaag aggagctgga
     3421 agcagaaaga gctgctcgag ccaaggtgga aaagcagaga tcagatttgg cccgagagct
     3481 ggaggtatta agtgagcggc ttgaagaggc tgggggtgcc actgctgccc agctggagat
     3541 gaacaagaaa cgtgaagctg agttcctgaa gctggcgcgt gacctcgagg aggccacgct
     3601 gcactatgaa gccacagctg ctgctctgag gaagaagcat gcggacagcg tggctgagat
     3661 gggggagcag ctggacaacc tgcagcgcgt caagcagaaa ctggaaaagg agaaaagcga
     3721 gctgaaaatg gaagtggatg atctgacatc caacatggag caaacggtta agggaaaagc
     3781 aaatgcagaa aaactttgtc gcacttatga agatcatctt aatgagacaa aaactaaact
     3841 ggatgaaatg actcgcctca tgaatgacct cactactcaa aagacaaaac tccagagtga
     3901 gaatggtgaa tttgtaagac agcttgaaga gaaagagtcg ctgataagtc agctgtcccg
     3961 aggaaaaaca tcatttacac agcagattga agaacttagg agacagctag aagaggaaac
     4021 caagtccaaa aatgctctgg ctcatgccct gcaagcagcc aggcatgact gtgatctctt
     4081 gcgagaacag tacgaggagg agcaagaagc caaggcagag ctgcagcggg ctctctccaa
     4141 gggaaatgca gaagtggcac aatggagaac aaagtatgaa actgatgcca ttcagaggac
     4201 tgaggaactg gaagatgcca aaaaaaagct tgctgcccgc ctgcaagaag ctgaggaagc
     4261 aattgaagct gccaacgcca agtgctcttc tctggaaaag acaaagcaca ggctgcagaa
     4321 cgagctggaa gatatgatga ttgatctgga aaaggccaac tcagcggctg cctccctgga
     4381 caagaagcag cgtggctttg acaagatcat caatgactgg aagcagaagt atgaagagtc
     4441 acaggctgag ctggaagctt cccagaagga ggcccgcagc ctcagcaccg agctcttcaa
     4501 gctgaagaat gcctatgaag agacactgga ccatctggag actctgaaac gggaaaacaa
     4561 gaacctccaa gaggaaattt ctgatctgac caatcagatc agtgaaggaa acaagaacct
     4621 ccatgagata gaaaaagtca agaagcaggt agaacaagaa aagtcagagg ttcagctagc
     4681 tctggaagaa gcagagggag ctttggagca tgaagaaagc aagacccttc gttttcagct
     4741 tgagctttct cagcttaaag ctgattttga aaggaagctg gcagaaaagg atgaagaaat
     4801 ggaaaatata aggaggaacc aacaacgcac catagattct ctgcagtcca cccttgattc
     4861 tgaagcccgg agcagaaatg aggccatccg gctgaagaag aagatggaag gagacctcaa
     4921 cgagatggaa atccagctca gccatgctaa caggcatgct gcagaagcaa ccaagtcagc
     4981 acgtggcctg cagacacaaa tcaaggagct ccaggtgcag ctggatgact tgggacacct
     5041 gaatgaagac ttgaaggagc agctggcagt ctctgacagg aggaacaacc ttctccagtc
     5101 agagctggat gagctgaggg ctttgctgga ccagactgaa cgggcgagga agctggctga
     5161 gcatgagcta ctggaagcca ccgaacgtgt gaacctgctg catactcaga acacaagcct
     5221 gatcaatcag aagaagaaac tggagggtga catatcccag atgcagaatg aagtggagga
     5281 atcaatccag gagtgccgga acgcagagga aaaagccaaa aaagcgatca cagatgcagc
     5341 aatgatggct gaggagctta aaaaggagca agatactagt gctcacttgg agagaatgaa
     5401 gaagaacatg gaacaaacca ttaaagatct gcagaaacga ctggatgaag cagaacaaat
     5461 agccctgaaa ggtggcaaga aacagatcca gaaactggaa tccagggttc gtgagctgga
     5521 gaatgaactt gagaatgaac tccgccgcaa ttcagatgcc caaaagggag cccgcaagtt
     5581 tgagaggcgc ataaaggagg tgacttatca gtcagaagaa gataagaaaa atctggcccg
     5641 aatgcaggat ctgatagata agctacaact aaaagtgaag agctacaaac accaagcaga
     5701 ggaagccgaa gcacaagcca atctgtacct ttcgaagtac agaaaacagc aacatgatct
     5761 ggacgatgct gaagaaaggg cagaaatagc tgaatctcaa gttaacaagc tgaggagcaa
     5821 gtcaagggat attggcatga aaaaggttca tgaagaggag taagtgcggt cctggctccc
     5881 agatataaga tgatgattca tacaatcagg tataaccaaa agcagatgta ttaaaacaaa
     5941 actaaaacga gcacttacaa aaataaatat caagtgcaaa ccaaaaaaaa aa
//

LOCUS       NM_001318982            2525 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus LOC768735 (LOC768735), mRNA.
ACCESSION   NM_001318982 XM_001231337
VERSION     NM_001318982.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2525)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ720383.1.
            On Jan 20, 2016 this sequence version replaced gi:971379539.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720383.1, AJ447388.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201358, SAMEA2201361
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2525
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Leghorn"
     gene            1..2525
                     /gene="LOC768735"
                     /gene_synonym="CTC-575C13.4; CTD-2561J22.3"
                     /note="LOC768735"
                     /db_xref="CGNC:54710"
                     /db_xref="GeneID:768735"
     CDS             36..1613
                     /gene="LOC768735"
                     /gene_synonym="CTC-575C13.4; CTD-2561J22.3"
                     /EC_number="2.7.1.21"
                     /codon_start=1
                     /product="LOC768735"
                     /protein_id="NP_001305911.1"
                     /db_xref="CGNC:54710"
                     /db_xref="GeneID:768735"
                     /translation="MASHMEEPVTFEDIAIYLSRAEWDMVAEEQRELYRSVMLDNYEL
                     LASLGYPGPKPDILHRLERGEEPWVNTPQSTVKWDGPDRPLGLNGYKRWLAESCSSRW
                     LDADKHKVLEETNPPSHGERCEPWRLRSSRLLKKFGCLEGRSELRSEAASSQPAPEGS
                     QEKARMGCLTRNLETEGKQGIKTELAQSMGNVASCKRLHDNCTDTFQGTVEKPHHVLE
                     EVSVFQANREYRESSTEDVIKTVLEDHCYCVSNALPWTVFSRALREHDYCSNNNSDSS
                     VLRDHEYCQVQRFPYRDRIRKVVCRTCRARARAYRLAKRKSYVERIIWKAKRSVRFLK
                     STFKSLWFPRAFFCTKSLSASPVSSSVPLARADNSTKETCGTFCPPAEQVVVPQQSQK
                     KEDSQEVAVLPQPEKEHSQEETSEAHSAPAAPVESAAAPPAPREAAEVQGEAAQPEVL
                     VHQGMQEAKLIHEADTQQNTERYKIINPSCVLLHDAYEMVVWTVDHMLESVCQAFELG
                     GYTLCKEMRPVITQSDS"
ORIGIN      
        1 agagtgtaga ggtttgcgag gccttcacag gcgtcatggc ctcgcacatg gaggagcctg
       61 tgacctttga ggacatcgcc atctatctga gccgcgcaga gtgggacatg gttgcagagg
      121 agcagaggga gctgtaccgc agcgtcatgc tggacaacta tgagctcttg gcatcactgg
      181 gatacccagg ccccaaacct gacattctgc atcggctgga gcgtggggaa gagccatggg
      241 tcaacacacc acagagcaca gtgaagtggg atggacctga cagacctctt ggactcaatg
      301 ggtacaagag atggctggca gagtcgtgct ccagcaggtg gctggatgct gacaagcaca
      361 aggtgctgga ggagacaaac ccccccagcc atggagaacg atgtgagccg tggcggctac
      421 ggtctagcag actgctgaag aagtttgggt gcctcgaggg taggagtgag ttgcgatcag
      481 aggcagccag cagccagcca gcgccagagg gaagccaaga gaaggcacgg atgggctgtt
      541 tgaccaggaa tttagaaacg gaaggtaaac aagggatcaa gacagaatta gcacaaagca
      601 tgggaaatgt ggcttcttgc aagcgtctgc atgataactg cacagacacc tttcaaggga
      661 ctgtagaaaa accacatcat gttttagagg aagtaagtgt tttccaggca aacagggaat
      721 acagggaatc ttctactgag gatgtgatca aaactgttct ggaagaccac tgttactgtg
      781 tgagtaatgc actgccctgg actgtatttt cacgtgctct gagagaacat gactactgca
      841 gtaacaataa tagtgattcc tcagtgctca gagaccacga atactgtcag gtacaaaggt
      901 ttccttatcg ggacagaatc cgtaaagttg tttgccgtac ttgcagggct cgtgccagag
      961 cttataggct agcaaagcga aaatcctatg tagagcgtat catctggaaa gctaagcgaa
     1021 gtgtgcgatt tctcaagtcc accttcaaaa gcttgtggtt tcctcgagct ttcttctgca
     1081 caaaatctct ttctgcatct cctgtgtcgt catctgttcc tctggctagg gcagataact
     1141 ccacgaagga aacttgtggg acgttttgtc ctcctgcaga gcaggtggtt gtgccccaac
     1201 agtctcagaa gaaagaagac tcccaagagg tggctgtgct cccacagcct gagaaggagc
     1261 actctcagga ggagacatca gaagcacaca gtgcccctgc tgcacctgtt gaatcagcag
     1321 ctgcaccccc agcccccagg gaagctgcag aggtgcaggg ggaagcggca caacctgagg
     1381 tgcttgtgca ccaagggatg caggaggcaa aattgatcca tgaagctgac actcagcaaa
     1441 acacagaaag atacaaaatc attaatccaa gttgcgtatt gctgcacgat gcttatgaaa
     1501 tggtcgtgtg gactgttgat cacatgctgg aatctgtatg ccaggcattt gagcttggtg
     1561 gctatactct gtgtaaggag atgaggcctg tgattaccca gtctgacagc tgaccaccag
     1621 aacatgagca gctgtgcctg ctctgtcatg gtgaacagac agaaccctgc agcaagaccc
     1681 actaatgtgg cttcgcaata gaaactgaaa ggtgtactaa aggatcagtg cgtaaatgga
     1741 tactaccacg taaatggatg caaaacgtgg cttgtagcac ctgctgggaa aagtgttatc
     1801 acttgggagg cttcagggaa aagccagagg aagagaacaa gcaggactgg tgcaagtaaa
     1861 agaggaagaa gcctgggaaa acttataaga gatgggagaa taagggcagc tgtgtgttag
     1921 caggctgctg tctggtgtac tttctggctc agctgtgtgt gatcactgtg tagtttctcc
     1981 ttgttaaacc attgccacct gtttgtgtga gcacatgctc acgtgtgtca gcatgcgagc
     2041 tgtgcttgct tgccagggct ggacctggca gaaagggatc tgaggctgcc gtactcaact
     2101 ctgcctcagt acaggcactg tgtgtgatgt cctgggctct ccctctcata atttaagcct
     2161 tttgaacacg ggaattctta agatggaacg atatatattt tttttttaag agactgcaca
     2221 tctgcctgtt ttgaaagcag gtggggatgt atcacgcaaa gccttgctgc attctaatgt
     2281 gaaagctatt ggaaaaaaaa tcattgcagt gggaggtgag gttctgatag tgggaaggct
     2341 gcgaaaagat gctggggctg ccctgtacca gtgcagccac atccagcagc ccggccacac
     2401 agagtggtag agcccagcaa ctgagatggc ggggcctttt aattggtctt tgttctcact
     2461 acccaactgt attttcattg gcaataaaat gaacttttcc ccaggttgaa aaaaaaaaaa
     2521 aaaaa
//

LOCUS       NM_001318432             969 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus histamine N-methyltransferase-like (LOC771456), mRNA.
ACCESSION   NM_001318432
VERSION     NM_001318432.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Drozak J, Chrobok L, Poleszak O, Jagielski AK and Derlacz R.
  TITLE     Molecular identification of carnosine N-methyltransferase as
            chicken histamine N-methyltransferase-like protein (hnmt-like)
  JOURNAL   PLoS ONE 8 (5), E64805 (2013)
   PUBMED   23705015
  REMARK    GeneRIF: carnosine N-methyltransferase was purified from chicken
            muscle, a rich source of the enzyme, characterized and identified
            using mass spectrometry analysis.
            GeneRIF: Chicken histamine N-methyltransferase-like gene encodes
            carnosine N-methyltransferase that catalyzes the transfer of methyl
            group of S-adenosyl-L-methionine to carnosine, yielding anserine.
            Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from KF271750.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: KF271750.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201363, SAMEA2201366
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
     gene            1..969
                     /gene="LOC771456"
                     /gene_synonym="HNMT-like"
                     /note="histamine N-methyltransferase-like"
                     /db_xref="CGNC:56790"
                     /db_xref="GeneID:771456"
     CDS             1..969
                     /gene="LOC771456"
                     /gene_synonym="HNMT-like"
                     /EC_number="2.1.1.22"
                     /function="catalyzes the transfer of methyl group of
                     S-adenosyl-L-methionine to carnosine yielding anserine"
                     /codon_start=1
                     /product="carnosine N-methyltransferase 2"
                     /protein_id="NP_001305361.1"
                     /db_xref="CGNC:56790"
                     /db_xref="GeneID:771456"
                     /translation="MEPTPEMKRNRLPSMNFEAEILADPHDNSELYVIPSMRSLTAEE
                     YVEAFQSFLDHSTEHQCMDEFNKEVMPHIMAGLGNGKSTINILGVGSGTGEQDLKMIQ
                     ILQAAHPGVLINNEIIEPNPQHVAAYKELVNRAPDLQGVSFTWHQLTSSEYEQQVKEK
                     NTHKKFDFIHMIQMLYRVEDIPNTIKFFHSCLNHQGKLLIIILSDSSGWASLWKKYRH
                     CLPSTDSGHYITSDSITAVLRKLGIKYHVYEFPSGWDITECFIEGDPAGGHMMDFLTG
                     TKNFLGTAPAALRSRLQEALCQPECSSRKDGRVIFCNNLSMIVAES"
ORIGIN      
        1 atggagccca cccctgagat gaagaggaat aggttaccca gcatgaactt tgaagcagag
       61 attctggcag atccacacga taattcagag ctgtatgtca tcccttccat gagaagtctc
      121 acggctgagg agtatgtaga ggcctttcag tcatttttgg atcactcaac agagcaccag
      181 tgcatggatg agttcaacaa ggaggtgatg ccacacatca tggctggtct cggcaatgga
      241 aaatcgacta taaacattct gggagtgggg agcggcacag gtgaacagga tctgaaaatg
      301 atccagatcc tgcaggctgc acacccaggg gtccttatca acaacgaaat catagagccc
      361 aacccacagc acgtggccgc ctacaaagag ctggttaatc gagctccaga tctgcagggg
      421 gtctctttta cttggcacca gcttacttcc tcagagtatg aacaacaggt gaaagagaaa
      481 aacacacaca agaagttcga cttcatccat atgattcaga tgctgtaccg tgtggaagat
      541 attcctaaca ccatcaagtt tttccacagc tgcctcaacc atcagggcaa actcctgatc
      601 ataattctgt cagacagcag cggttgggcc agcttatgga agaagtacag gcattgcttg
      661 ccttcaaccg acagcggcca ctacatcacc tccgacagca tcacggcagt gctgaggaag
      721 ctcggcatca agtaccacgt ttatgagttc ccatcgggct gggacatcac cgagtgcttt
      781 attgaggggg acccagccgg aggccatatg atggatttcc tgacggggac aaaaaacttc
      841 ctgggcacag caccggcagc tctgcggagc cgtctgcagg aggctctctg ccagcccgaa
      901 tgcagcagca ggaaggacgg gagagtcatt ttctgcaaca atctcagtat gatcgtagcg
      961 gaatcctaa
//

LOCUS       NM_001317736            2344 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus transmembrane protein 136 family member 1
            (TMEM136-1), mRNA.
ACCESSION   NM_001317736 XM_417891
VERSION     NM_001317736.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000115.1.
            On Dec 5, 2015 this sequence version replaced gi:513222209.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BM440371.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02738216, SAMN02738218
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                AADN04000115.1     1471604-1471676     c
            74-273              AADN04000115.1     1471314-1471513     c
            274-2344            AADN04000115.1     1468686-1470756     c
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
                     /breed="Red Jungle Fowl"
     gene            1..2344
                     /gene="TMEM136-1"
                     /gene_synonym="null; TMEM136"
                     /note="transmembrane protein 136 family member 1"
                     /db_xref="CGNC:66350"
                     /db_xref="GeneID:419753"
     misc_feature    27..29
                     /gene="TMEM136-1"
                     /gene_synonym="null; TMEM136"
                     /note="upstream in-frame stop codon"
     CDS             78..812
                     /gene="TMEM136-1"
                     /gene_synonym="null; TMEM136"
                     /codon_start=1
                     /product="transmembrane protein 136 family member 1"
                     /protein_id="NP_001304665.1"
                     /db_xref="CGNC:66350"
                     /db_xref="GeneID:419753"
                     /translation="MLPIALEVLGSLLAWLCLYAAFCLWNRHRSPEWNCRLVTLLHGA
                     TATCLSGYIALWDGPWPLSHAGSPNTALQVHVLSLTLGYFIFDLLWCLYFQTEGDLML
                     LHHTLSICGMVLVLGLGKSATEVNAVVFVSEITNPLLQTRWFLREMGCYHSFLGEVVD
                     FCFVLLFLVLRIGGGALIMYAMVTAPDPNWILKGGGLAMYIVSLGFMVEICRFVRRKM
                     LKKYHSWRRLRSEDAPVKTNGHLAAH"
ORIGIN      
        1 aagaagggcg tatggggaag cggtgctgag aggagccggc tgcgttcagc cccgcgctgt
       61 gctcgtgggg aggcaggatg ctccccatcg ccctcgaggt gctcggcagc ctcctggcct
      121 ggctgtgcct ctatgctgct ttctgcctct ggaacaggca ccgctccccc gagtggaact
      181 gccgcctggt caccctgctg cacggggcca ccgccacctg cctgtccggg tacatcgccc
      241 tctgggacgg cccctggcct ctgagccatg caggttcacc aaacaccgct ctccaggtcc
      301 acgtgctgtc cctgacgttg ggttacttca tcttcgacct gctctggtgc ttgtacttcc
      361 agacagaggg agacctgatg ctgctccatc acacgctgag catctgcggc atggtgctgg
      421 tgctggggct gggcaagtct gccaccgagg tcaacgcggt ggtgtttgtc agtgagatca
      481 ccaaccctct gctgcagacc cgctggttcc tgcgggagat gggctgctac cactccttcc
      541 tgggggaggt ggtggatttc tgcttcgtgc tcctcttcct ggtgctgcgc attggcggag
      601 gagctctgat catgtacgcc atggtgacgg ccccggatcc caactggatc ctcaaggggg
      661 gaggcctggc catgtacatc gtgtccttgg ggttcatggt tgagatctgc cgcttcgtta
      721 ggaggaagat gttgaaaaag taccattcct ggaggcgcct gaggagtgag gatgcacccg
      781 tgaaaacaaa tgggcacttg gcagctcact gacggtggct gctgtggatg gggccccggc
      841 tgctggagcc tgtaactgtg acaagagctc ctaaaagtgg tgtggaaatg acatcctggc
      901 actggcagct ctctacaagc cctggggaag atggatggtc actcagcatg tgggaaagct
      961 gaccaaatag ggatttcagc ataggagcat agcgtgtctg ctgagcggct gtccctgact
     1021 gctccctctt ccagcccata gtgcacagcc tgactgatcc atgatcgtgt tggaggcagt
     1081 gttatctcac agtgcagttg gaatatctga tctggaacat ctcaccctct ccccagtgga
     1141 gccaggtgtg ggtgtgaccc agccaggatg tactcagcgt tgttctccct tcaaatggga
     1201 caaaacattg gaccaagtac atgaatgaga ctttgtgagc aaggctgaag tgcccacagg
     1261 gggacagcgg ggttgtcctt ggtgtgaagt gatgctgctg tggtacgtga gggtgaggca
     1321 atgttctacc tcattgtttt tagcaataca tttccttcct tttaatactt gcattcaagg
     1381 agatactgat cttggagcag tgtgacttca ctgggttgga cagtgcacac ctctgttcct
     1441 tacaaacagg agtctggaac cagacctgtg ctgaacacct cctcacagag cgcatcacct
     1501 caccttgcac tgctttcaga aactcgggtg ctgtgtgtgt gagggctgac agagcagaac
     1561 cctctctgga tgctctgtct gtcccggagc tgacttgctg caggccagga atgctgaatg
     1621 caatgcagac aggagcctgg tgttcatttc caggggtggc agcgatgttg aggtggatct
     1681 cagtgcgaca tcactccata cagttctcag catatggatc agttctcttc tttacctctc
     1741 agaattgtgt tctgactttc ccctggggtc gtaatgtgaa tttcccttca ctcatgtagc
     1801 agcatcctgc tggagctcga gagcccccgg agctcctggt ggcctttgcc ccacgtgtca
     1861 ctgctgtggg gtgcaggagg ggagtggctg tgtcacccct ctgcccttat cttgccagct
     1921 gggctctact cagcactgat acctgggctg cgaggtgtct ggagagataa aagctaatag
     1981 catgaatgga ctgagctttt aggtgtgtcc tctggatgcc acgcagaccc caggcatgca
     2041 gcaggtctat ggggtcgggc agatggagcc tggcaatcct ggggggaggg cacttcggag
     2101 ccatgggttg ctgtcagagc tccccatagt gagcagactt ccaataaagg tgcattctca
     2161 ttttaaaagg gaacagttgc tgtagcattc ttttgttctg ggtctgaagg aggcagctgg
     2221 agctaacgag gctgggccgg atggggcagc ccggtctggt ggtcggaacc ccgctgtacc
     2281 ccagttgttc catgcagaac accccttccc acagggctgg gaagcaatgt gccctcgggt
     2341 ggtc
//

LOCUS       NM_001305110            1304 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
            variant 2, mRNA.
ACCESSION   NM_001305110 XM_004940252
VERSION     NM_001305110.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU369494.1, BX929701.2 and AADN04000375.1.
            On Feb 25, 2015 this sequence version replaced gi:513177299.
            
            Transcript Variant: This variant (2) uses an alternate splice site
            in its 5' UTR compared to variant 1. Variants 1 and 2 encode the
            same protein.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU369494.1, BX929701.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02729317, SAMN03354467
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BU369494.1         1-7
            8-1233              BX929701.2         1-1226
            1234-1304           AADN04000375.1     1027885-1027955     c
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..1304
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /note="ethylmalonyl-CoA decarboxylase 1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
     CDS             67..969
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /EC_number="4.1.1.41"
                     /EC_number="4.1.1.94"
                     /note="isoform 1 is encoded by transcript variant 2; enoyl
                     Coenzyme A hydratase domain containing 1;
                     methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
                     domain containing 1"
                     /codon_start=1
                     /product="ethylmalonyl-CoA decarboxylase isoform 1"
                     /protein_id="NP_001292039.1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
                     /translation="MAVFLWRNLFQTTKARMLQQRRASLYNGAHDYDEELIKKKLQQF
                     AGGSISLSKEHSGIGILTLNNSRLMNAFTGTMMLELQERVTELENWKDGKGLIICGAG
                     NTFCSGSDLNAVKAISNSQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELT
                     TACDFRLMTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERAL
                     HLGLSEGTLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTE
                     KDVFGTVWGGPANLEALTRRQKHK"
     mat_peptide     67..960
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /product="Ethylmalonyl-CoA decarboxylase"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (F1NB38.2)"
ORIGIN      
        1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tggtttcttt
       61 ccagaaatgg cagttttcct atggagaaac ttgtttcaga ctacaaaggc aaggatgcta
      121 cagcagagaa gggcatcgct gtataatggt gctcatgact atgatgaaga attgataaag
      181 aagaaacttc agcagtttgc tggtggatcc atcagccttt ccaaagaaca cagtggcatt
      241 ggaatactta ccttgaacaa ctcccgacta atgaatgcct tcacaggtac tatgatgcta
      301 gaactccagg agagagtaac tgaactggaa aactggaagg atggcaaagg ccttatcatc
      361 tgtggtgcag gaaacacttt ttgttcagga tctgatttga atgctgtcaa agcaatatcc
      421 aattcccagg atgggatgaa tatgtgcatg tttatgcaaa ataccttaac cagactcatg
      481 aggttgccat tgatcagcat tgcactaatc caaggaaaag ctcttggagg aggagcggaa
      541 cttaccacag catgtgattt caggttgatg acgccaggca gtgagattcg atttgtccat
      601 aagcacatgg gcctggtgcc aggctgggga ggagccacca ggctggtgcg aatcattggc
      661 agtagagctg ccctccagct gctgagcagg gctcatgggg tggaccctga gagagcactg
      721 catctcggac tgtcagaggg gaccttgtct tcttcagatg aaaccggatc gctagaagaa
      781 gctcgagcct ggctgagtca gtacacagag ggtccagcta gtgtgataca ggctgtgaaa
      841 aaggtggtca cggctggaag agaactgcca ctggaagctg ccctaaggac agagaaggat
      901 gtttttggaa ctgtgtgggg tgggcctgcc aatttggagg cactgactag aagacaaaag
      961 cataaataat ggccaataca taataaatat tcttgatatt ttacacacga agctttcaca
     1021 aaagcagaca atagattgaa tcgtttaatg ccagtttaaa ggagcaagtt cttagcattc
     1081 ctgtcgttca cgtctggcag acttatttgg tgtgcaacca cagagtaatc cccagaagat
     1141 cctttactgt tctaatcacc cactgaatgg agattagtga aattcgtatg taaaggtaaa
     1201 tactgggctt agaacagaat ataattattt tgcaatgagg ctgaagatta ttttctttgg
     1261 aataattttg ttttttctaa ctgatataga aatgaattgt gtga
//

LOCUS       NM_001305109            1308 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
            variant 1, mRNA.
ACCESSION   NM_001305109 XM_001231582
VERSION     NM_001305109.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU369494.1, BX929701.2, CD761561.1 and AADN04000375.1.
            On Feb 24, 2015 this sequence version replaced gi:513177293.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. Variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CD761561.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201361, SAMEA2201363
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BU369494.1         1-7
            8-52                BX929701.2         1-45
            53-61               CD761561.1         11-19
            62-1237             BX929701.2         51-1226
            1238-1308           AADN04000375.1     1027885-1027955     c
FEATURES             Location/Qualifiers
     source          1..1308
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..1308
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /note="ethylmalonyl-CoA decarboxylase 1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
     CDS             71..973
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /EC_number="4.1.1.41"
                     /EC_number="4.1.1.94"
                     /note="isoform 1 is encoded by transcript variant 1; enoyl
                     Coenzyme A hydratase domain containing 1;
                     methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
                     domain containing 1"
                     /codon_start=1
                     /product="ethylmalonyl-CoA decarboxylase isoform 1"
                     /protein_id="NP_001292038.1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
                     /translation="MAVFLWRNLFQTTKARMLQQRRASLYNGAHDYDEELIKKKLQQF
                     AGGSISLSKEHSGIGILTLNNSRLMNAFTGTMMLELQERVTELENWKDGKGLIICGAG
                     NTFCSGSDLNAVKAISNSQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELT
                     TACDFRLMTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERAL
                     HLGLSEGTLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTE
                     KDVFGTVWGGPANLEALTRRQKHK"
     mat_peptide     71..964
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /product="Ethylmalonyl-CoA decarboxylase"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (F1NB38.2)"
ORIGIN      
        1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcagttt
       61 ctttccagaa atggcagttt tcctatggag aaacttgttt cagactacaa aggcaaggat
      121 gctacagcag agaagggcat cgctgtataa tggtgctcat gactatgatg aagaattgat
      181 aaagaagaaa cttcagcagt ttgctggtgg atccatcagc ctttccaaag aacacagtgg
      241 cattggaata cttaccttga acaactcccg actaatgaat gccttcacag gtactatgat
      301 gctagaactc caggagagag taactgaact ggaaaactgg aaggatggca aaggccttat
      361 catctgtggt gcaggaaaca ctttttgttc aggatctgat ttgaatgctg tcaaagcaat
      421 atccaattcc caggatggga tgaatatgtg catgtttatg caaaatacct taaccagact
      481 catgaggttg ccattgatca gcattgcact aatccaagga aaagctcttg gaggaggagc
      541 ggaacttacc acagcatgtg atttcaggtt gatgacgcca ggcagtgaga ttcgatttgt
      601 ccataagcac atgggcctgg tgccaggctg gggaggagcc accaggctgg tgcgaatcat
      661 tggcagtaga gctgccctcc agctgctgag cagggctcat ggggtggacc ctgagagagc
      721 actgcatctc ggactgtcag aggggacctt gtcttcttca gatgaaaccg gatcgctaga
      781 agaagctcga gcctggctga gtcagtacac agagggtcca gctagtgtga tacaggctgt
      841 gaaaaaggtg gtcacggctg gaagagaact gccactggaa gctgccctaa ggacagagaa
      901 ggatgttttt ggaactgtgt ggggtgggcc tgccaatttg gaggcactga ctagaagaca
      961 aaagcataaa taatggccaa tacataataa atattcttga tattttacac acgaagcttt
     1021 cacaaaagca gacaatagat tgaatcgttt aatgccagtt taaaggagca agttcttagc
     1081 attcctgtcg ttcacgtctg gcagacttat ttggtgtgca accacagagt aatccccaga
     1141 agatccttta ctgttctaat cacccactga atggagatta gtgaaattcg tatgtaaagg
     1201 taaatactgg gcttagaaca gaatataatt attttgcaat gaggctgaag attattttct
     1261 ttggaataat tttgtttttt ctaactgata tagaaatgaa ttgtgtga
//

LOCUS       NM_001305111            1075 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
            variant 3, mRNA.
ACCESSION   NM_001305111 XM_004940254
VERSION     NM_001305111.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU369494.1, BX929701.2, BU129201.1 and AADN04000375.1.
            On Feb 24, 2015 this sequence version replaced gi:513177305.
            
            Transcript Variant: This variant (3) lacks an alternate exon in the
            5' UTR and coding region and uses a downstream start codon compared
            to variant 1. It encodes isoform 2 which has a shorter N-terminus
            compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU129201.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02729316, SAMN03354478
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BU369494.1         1-7
            8-53                BX929701.2         1-46
            54-151              BU129201.1         21-118
            152-1004            BX929701.2         374-1226
            1005-1075           AADN04000375.1     1027885-1027955     c
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..1075
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /note="ethylmalonyl-CoA decarboxylase 1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
     misc_feature    39..41
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /note="upstream in-frame stop codon"
     CDS             63..740
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /EC_number="4.1.1.41"
                     /EC_number="4.1.1.94"
                     /note="isoform 2 is encoded by transcript variant 3; enoyl
                     Coenzyme A hydratase domain containing 1;
                     methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
                     domain containing 1"
                     /codon_start=1
                     /product="ethylmalonyl-CoA decarboxylase isoform 2"
                     /protein_id="NP_001292040.1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
                     /translation="MMLELQERVTELENWKDGKGLIICGAGNTFCSGSDLNAVKAISN
                     SQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELTTACDFRLMTPGSEIRFV
                     HKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERALHLGLSEGTLSSSDETGS
                     LEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTEKDVFGTVWGGPANLEAL
                     TRRQKHK"
ORIGIN      
        1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcaggta
       61 ctatgatgct agaactccag gagagagtaa ctgaactgga aaactggaag gatggcaaag
      121 gccttatcat ctgtggtgca ggaaacactt tttgttcagg atctgatttg aatgctgtca
      181 aagcaatatc caattcccag gatgggatga atatgtgcat gtttatgcaa aataccttaa
      241 ccagactcat gaggttgcca ttgatcagca ttgcactaat ccaaggaaaa gctcttggag
      301 gaggagcgga acttaccaca gcatgtgatt tcaggttgat gacgccaggc agtgagattc
      361 gatttgtcca taagcacatg ggcctggtgc caggctgggg aggagccacc aggctggtgc
      421 gaatcattgg cagtagagct gccctccagc tgctgagcag ggctcatggg gtggaccctg
      481 agagagcact gcatctcgga ctgtcagagg ggaccttgtc ttcttcagat gaaaccggat
      541 cgctagaaga agctcgagcc tggctgagtc agtacacaga gggtccagct agtgtgatac
      601 aggctgtgaa aaaggtggtc acggctggaa gagaactgcc actggaagct gccctaagga
      661 cagagaagga tgtttttgga actgtgtggg gtgggcctgc caatttggag gcactgacta
      721 gaagacaaaa gcataaataa tggccaatac ataataaata ttcttgatat tttacacacg
      781 aagctttcac aaaagcagac aatagattga atcgtttaat gccagtttaa aggagcaagt
      841 tcttagcatt cctgtcgttc acgtctggca gacttatttg gtgtgcaacc acagagtaat
      901 ccccagaaga tcctttactg ttctaatcac ccactgaatg gagattagtg aaattcgtat
      961 gtaaaggtaa atactgggct tagaacagaa tataattatt ttgcaatgag gctgaagatt
     1021 attttctttg gaataatttt gttttttcta actgatatag aaatgaattg tgtga
//

LOCUS       NM_001305112             932 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
            variant 4, mRNA.
ACCESSION   NM_001305112
VERSION     NM_001305112.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU369494.1, BX929701.2, BU383248.1 and AADN04000375.1.
            
            Transcript Variant: This variant (4) lacks two consecutive
            alternate exons in the 5' UTR and coding region and uses a
            downstream start codon compared to variant 1. It encodes isoform 3
            which has a significantly shorter N-terminus compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU383248.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA3109051
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 BU369494.1         1-7
            8-52                BX929701.2         1-45
            53-651              BU383248.1         24-622
            652-861             BX929701.2         1017-1226
            862-932             AADN04000375.1     1027885-1027955     c
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..932
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /note="ethylmalonyl-CoA decarboxylase 1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
     CDS             64..597
                     /gene="ECHDC1"
                     /gene_synonym="MMCD"
                     /EC_number="4.1.1.41"
                     /EC_number="4.1.1.94"
                     /note="isoform 3 is encoded by transcript variant 4; enoyl
                     Coenzyme A hydratase domain containing 1;
                     methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
                     domain containing 1"
                     /codon_start=1
                     /product="ethylmalonyl-CoA decarboxylase isoform 3"
                     /protein_id="NP_001292041.1"
                     /db_xref="CGNC:54924"
                     /db_xref="GeneID:769021"
                     /translation="MNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELTTACDFRL
                     MTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERALHLGLSEG
                     TLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTEKDVFGTV
                     WGGPANLEALTRRQKHK"
ORIGIN      
        1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcaggat
       61 gggatgaata tgtgcatgtt tatgcaaaat accttaacca gactcatgag gttgccattg
      121 atcagcattg cactaatcca aggaaaagct cttggaggag gagcggaact taccacagca
      181 tgtgatttca ggttgatgac gccaggcagt gagattcgat ttgtccataa gcacatgggc
      241 ctggtgccag gctggggagg agccaccagg ctggtgcgaa tcattggcag tagagctgcc
      301 ctccagctgc tgagcagggc tcatggggtg gaccctgaga gagcactgca tctcggactg
      361 tcagagggga ccttgtcttc ttcagatgaa accggatcgc tagaagaagc tcgagcctgg
      421 ctgagtcagt acacagaggg tccagctagt gtgatacagg ctgtgaaaaa ggtggtcacg
      481 gctggaagag aactgccact ggaagctgcc ctaaggacag agaaggatgt ttttggaact
      541 gtgtggggtg ggcctgccaa tttggaggca ctgactagaa gacaaaagca taaataatgg
      601 ccaatacata ataaatattc ttgatatttt acacacgaag ctttcacaaa agcagacaat
      661 agattgaatc gtttaatgcc agtttaaagg agcaagttct tagcattcct gtcgttcacg
      721 tctggcagac ttatttggtg tgcaaccaca gagtaatccc cagaagatcc tttactgttc
      781 taatcaccca ctgaatggag attagtgaaa ttcgtatgta aaggtaaata ctgggcttag
      841 aacagaatat aattattttg caatgaggct gaagattatt ttctttggaa taattttgtt
      901 ttttctaact gatatagaaa tgaattgtgt ga
//

LOCUS       NM_001305089            3510 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus minichromosome maintenance 9 homologous recombination
            repair factor (MCM9), mRNA.
ACCESSION   NM_001305089 XM_003641032
VERSION     NM_001305089.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Nishimura K, Ishiai M, Horikawa K, Fukagawa T, Takata M, Takisawa H
            and Kanemaki MT.
  TITLE     Mcm8 and Mcm9 form a complex that functions in homologous
            recombination repair induced by DNA interstrand crosslinks
  JOURNAL   Mol. Cell 47 (4), 511-522 (2012)
   PUBMED   22771115
REFERENCE   2  (bases 1 to 3510)
  CONSRTM   International Chicken Genome Sequencing Consortium
  TITLE     Sequence and comparative analysis of the chicken genome provide
            unique perspectives on vertebrate evolution
  JOURNAL   Nature 432 (7018), 695-716 (2004)
   PUBMED   15592404
  REMARK    Erratum:[Nature. 2005 Feb 17;433(7027):777]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB689141.1.
            On Feb 21, 2015 this sequence version replaced gi:513177436.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB689141.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201363, SAMEA2201366
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3510              AB689141.1         1-3510
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..3510
                     /gene="MCM9"
                     /note="minichromosome maintenance 9 homologous
                     recombination repair factor"
                     /db_xref="CGNC:66117"
                     /db_xref="GeneID:100857742"
     CDS             1..3510
                     /gene="MCM9"
                     /EC_number="3.6.4.12"
                     /note="DNA replication licensing factor MCM9;
                     minichromosome maintenance complex component 9"
                     /codon_start=1
                     /product="DNA helicase MCM9"
                     /protein_id="NP_001292018.1"
                     /db_xref="CGNC:66117"
                     /db_xref="GeneID:100857742"
                     /translation="MALRADQVSLIGQVFESYLLQHHRDDILGILRQGDDEAHYPVLV
                     DALTLFETNMEIGEYFNAFPSQVLPIFDGALRRAAMAVLQAATPSPELRMKPNLHARI
                     SGLPICPELTREHIPKTRDVGHFLSVTGTVIRTSLVKVLEFERSYICNKCKHVFVAKA
                     DFEQYYAFCRPSACLNEEGCNSTKFTCLSGTSSSPTSCRDYQEIKIQEQVQRLSVGSI
                     PRCMVVVLEDDLVDSCKSGDDITVYGVVMQRWKPFHQDARCDLELVLKANYVKVNNEQ
                     LAGVTIDEEVRKEFEDFWEKHRNNPLAGRNEILASLCPQVFGLYLVKLAVAMVLAGGV
                     QRIDATGTRIRGESHLLLVGDPGTGKSQFLKYAVKITPRSVLTAGIGSTSAGLTVTAV
                     KDFGEWNLEAGALVLADGGLCCIDEFNSIKEHDRTSIHEAMEQQTISVAKAGLVCKLN
                     TRTTILAATNPKGHYDPAESVSVNIALGSPLLSRFDLVLVLLDTKNEEWDRIISSFIL
                     QNKGCPSKSEKLWSMEKMKTYFCLIKRIQPKLSDESNLILVRYYQMQRQSDCRNAART
                     TIRLLESLIRLAEAHARLMFRDTVTLEDAVTVVSVMESSMQGGALLGAINALHTSFPE
                     NPMTQYRMQCELILERLELHDLLHKELQRLDRLQKETYCQLQPEETSFSTTTGCLNKN
                     TFESKQQSQSEPSDQQKINSYPQPSLPKSNCEGDKHPEALRNPTPGNNISTKRLSRLN
                     KRSDDGSLGWFDRLEDRNTDAEETFWKTSPLPKTSPDNMALKTMSKSSCSEEGNSSVP
                     RKEDGMRGSLRTVTLCAPLEQDKVSEISSKRTEERKCFSSEANIQDPTSASASVQESV
                     ITQRVSKSLQRLHTEKSHRFFTSTQNSEANALPSVLPVSGLLDLSSDTDSVVGDENNS
                     ASAAVKHAVISMRKRSKGQAEKEAKAVSSHEPEITDGESPPAAKLAKFSFRPRTKLDD
                     SSEKKNAEFPLFPSENTVKPGEQPQGEQLQKDCCPPEKRKMTLTCLGRKGLEKQSIGS
                     KGNEEQLSQALGKEMGGNAQIHSDVTLDVVSPPHTEKRREGEEKLGGPSTVRVCSSTL
                     ENLSKFCFASRPDSKSEAPPTIKTDTNNKESHSPLLKVHVSNPNKRKSFALGNASKDS
                     VVTRKSLFSIAELDDATLDFDWD"
ORIGIN      
        1 atggcgctgc gcgccgacca ggtgagcctc atcgggcagg tgttcgagtc ctacctgctg
       61 cagcaccacc gggacgacat cctcggcatc ctgcgccagg gggacgacga ggcgcactat
      121 ccggtcctcg tcgacgccct gacgctgttc gagaccaaca tggagatcgg ggagtacttc
      181 aacgccttcc ccagccaggt gctgcccatc tttgacggtg cgctacgccg ggcggccatg
      241 gcggtgctgc aggccgccac gccatcccca gagctccgca tgaagccaaa cctccatgcc
      301 aggatttcag gtttgcccat ttgcccagag ctgactcgag agcacattcc taagaccagg
      361 gatgtgggtc acttcttgtc tgtcactggg actgtcatcc gtaccagtct ggtgaaagtg
      421 ctggaatttg agcggagcta catctgcaat aagtgcaaac acgtatttgt ggctaaggct
      481 gactttgagc agtactatgc tttctgccgt ccatcagcct gcctgaatga agagggctgc
      541 aactcaacca agttcacttg cctctctgga acatcctcct cccctaccag ctgcagagac
      601 tatcaggaaa tcaaaattca ggagcaggtt caaagactgt ctgtcggaag catccctcgt
      661 tgcatggtgg ttgttctgga agatgactta gtggacagtt gcaaatctgg agatgacatc
      721 acagtgtatg gagtggtaat gcagagatgg aaacctttcc atcaggatgc acgctgtgac
      781 ttggagcttg ttttgaaagc caactacgtt aaagtaaata acgagcagct agcaggtgtt
      841 acaattgatg aagaggtccg caaggaattt gaagacttct gggaaaagca tagaaataat
      901 cccttagcag ggaggaatga aattttggct agtttatgcc ctcaagtgtt tggattgtac
      961 ctggtgaagt tggctgtagc catggtgctt gctggtggtg tgcagaggat tgatgctact
     1021 ggaactcgaa tcagaggtga atcgcatctt ctgttagttg gagacccagg aacggggaaa
     1081 tctcagtttc tcaagtatgc agtaaagatt acaccgcggt ctgtgcttac tgcaggaatt
     1141 ggatctacaa gtgcaggttt gacagtgact gctgtgaagg actttgggga gtggaacttg
     1201 gaagctggag cactggtgct tgcagatgga ggcctttgtt gcattgatga gttcaatagc
     1261 atcaaagaac atgacagaac cagtatccat gaagcaatgg agcaacaaac catcagtgta
     1321 gcaaaagcag gcttggtatg taagcttaat acaaggacaa ccatactggc agcaacaaac
     1381 cccaaaggcc attatgaccc tgctgagtct gtctctgtca acatagctct tggcagtccc
     1441 ctgctgagca gatttgacct ggtcttagtg ttattagata caaagaatga ggagtgggac
     1501 cgtatcattt catctttcat cttgcaaaat aaaggttgcc ctagcaaatc agaaaagctg
     1561 tggagcatgg aaaagatgaa aacctacttc tgccttataa aaaggataca gccaaaattg
     1621 tctgatgaga gcaacctgat cctcgtacgc tattatcaaa tgcagcgtca gagtgactgc
     1681 aggaatgctg cccgaactac cattcgcttg ttggagagtt tgatacgcct tgcagaagct
     1741 catgcccgct tgatgtttag ggataccgtg actttggaag atgctgtaac tgtggtatcg
     1801 gtgatggaat cttctatgca gggaggtgca cttcttggag ccatcaatgc cttacacacc
     1861 tctttcccag aaaacccaat gacacagtac cgaatgcagt gtgaactcat actggagcga
     1921 ctggagctgc atgatcttct gcacaaagag ctacaaagac ttgacagatt acaaaaggaa
     1981 acttactgcc aattacagcc tgaagagaca agtttcagta ctactacagg atgcttgaac
     2041 aaaaatacat ttgagtcaaa gcaacagtct cagtcagaac cttcagatca acaaaagatt
     2101 aactcctatc cacagccttc tttgcccaaa agcaattgtg aaggggataa acacccagaa
     2161 gccttacgca acccaacgcc tggtaataac ataagtacaa aacgcttgag tagacttaac
     2221 aagagaagtg atgatggcag cctgggatgg tttgacagac tggaagacag aaacactgat
     2281 gctgaagaaa ctttttggaa gacatctcca ttgcccaaga catctccaga taatatggct
     2341 ttaaaaacca tgtctaagtc ctcctgttca gaggaaggaa attcttcagt cccgaggaag
     2401 gaagatggaa tgagagggtc actaagaact gttactctgt gtgctccttt ggagcaagac
     2461 aaagtttctg agataagcag caaaaggact gaggagcgca aatgtttttc ttcagaagca
     2521 aacattcaag acccaacatc agcaagtgcc agtgtgcagg agtcagttat tacacaacgg
     2581 gtttctaaaa gcctgcagag gctgcacaca gagaaatcac atagattctt tacaagtaca
     2641 cagaactctg aagcaaatgc tcttccctca gtattacctg tatcagggct gctggatctt
     2701 tcaagtgata cagactcagt agttggagat gaaaataata gtgcatctgc agcagtaaaa
     2761 catgcagtaa tttccatgag aaaacgaagt aaaggtcaag cagagaagga agcaaaggca
     2821 gtaagttccc atgagccaga aattactgac ggtgaaagtc ctccagcagc taaactagct
     2881 aaattttctt tcagaccaag gacaaaactt gatgattctt ctgagaagaa aaacgcagaa
     2941 tttccccttt ttccaagtga aaatactgtt aagccgggag agcagcccca gggagagcag
     3001 ctgcaaaaag attgctgccc acctgagaaa cgcaagatga cactgacttg cttaggaaga
     3061 aagggtttgg aaaagcaatc cattggtagt aaagggaatg aagagcaact gagtcaggcc
     3121 ttagggaaag agatgggagg aaatgcacag atacattctg atgtcaccct tgatgttgtg
     3181 tcacctccac acactgaaaa aagaagggag ggagaggaga aacttggtgg tccaagcaca
     3241 gtgagggtgt gctccagcac attagaaaac ctctccaagt tctgctttgc gtcacgtcct
     3301 gactcaaaat cagaagcgcc accaactatc aagactgaca ctaacaacaa ggaaagccac
     3361 agcccattgc tgaaggtgca tgtgagcaat cctaataaaa ggaagagttt tgcattggga
     3421 aatgcaagta aagacagtgt ggtcacccga aaatctctct tctcaatagc agagctggat
     3481 gatgctacat tagattttga ctgggattaa
//

LOCUS       NM_205501               1578 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus argininosuccinate lyase 1 (ASL1), mRNA.
ACCESSION   NM_205501
VERSION     NM_205501.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Inoue M, Shiina T, Aizawa S, Sakata I, Takagi H and Sakai T.
  TITLE     Detailed analysis of the delta-crystallin mRNA-expressing region in
            early development of the chick pituitary gland
  JOURNAL   J. Mol. Histol. 43 (3), 273-280 (2012)
   PUBMED   22461196
  REMARK    GeneRIF: Embryonic chick pituitary gland consists of two different
            regions where delta-crystallin and Lhx3 are expressed.
REFERENCE   2  (bases 1 to 1578)
  AUTHORS   Sampaleanu LM, Vallee F, Slingsby C and Howell PL.
  TITLE     Structural studies of duck delta 1 and delta 2 crystallin suggest
            conformational changes occur during catalysis
  JOURNAL   Biochemistry 40 (9), 2732-2742 (2001)
   PUBMED   11258884
REFERENCE   3  (bases 1 to 1578)
  AUTHORS   Nickerson,J.M., Wawrousek,E.F., Borras,T., Hawkins,J.W.,
            Norman,B.L., Filpula,D.R., Nagle,J.W., Ally,A.H. and Piatigorsky,J.
  TITLE     Sequence of the chicken delta 2 crystallin gene and its intergenic
            spacer. Extreme homology with the delta 1 crystallin gene
  JOURNAL   J. Biol. Chem. 261 (2), 552-557 (1986)
   PUBMED   3941090
REFERENCE   4  (bases 1 to 1578)
  AUTHORS   Nickerson,J.M., Wawrousek,E.F., Hawkins,J.W., Wakil,A.S.,
            Wistow,G.J., Thomas,G., Norman,B.L. and Piatigorsky,J.
  TITLE     The complete sequence of the chicken delta 1 crystallin gene and
            its 5' flanking region
  JOURNAL   J. Biol. Chem. 260 (16), 9100-9105 (1985)
   PUBMED   3839507
REFERENCE   5  (bases 1 to 1578)
  AUTHORS   Ohno,M., Sakamoto,H., Yasuda,K., Okada,T.S. and Shimura,Y.
  TITLE     Nucleotide sequence of a chicken delta-crystallin gene
  JOURNAL   Nucleic Acids Res. 13 (5), 1593-1606 (1985)
   PUBMED   2987831
REFERENCE   6  (bases 1 to 1578)
  AUTHORS   Borras,T., Nickerson,J.M., Chepelinsky,A.B. and Piatigorsky,J.
  TITLE     Structural and functional evidence for differential promoter
            activity of the two linked delta-crystallin genes in the chicken
  JOURNAL   EMBO J. 4 (2), 445-452 (1985)
   PUBMED   4018032
REFERENCE   7  (bases 1 to 1578)
  AUTHORS   Yasuda,K., Nakajima,N., Isobe,T., Okada,T.S. and Shimura,Y.
  TITLE     The nucleotide sequence of a complete chicken delta-crystallin cDNA
  JOURNAL   EMBO J. 3 (6), 1397-1402 (1984)
   PUBMED   6547670
REFERENCE   8  (bases 1 to 1578)
  AUTHORS   Nickerson,J.M. and Piatigorsky,J.
  TITLE     Sequence of a complete chicken delta-crystallin cDNA
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 81 (9), 2611-2615 (1984)
   PUBMED   6585817
REFERENCE   9  (bases 1 to 1578)
  AUTHORS   Nickerson,J.M. and Piatigorsky,J.
  TITLE     The nucleic acid and deduced protein sequence of cDNA clones for
            delta-crystallin of the chicken lens
  JOURNAL   FEBS Lett. 144 (2), 289-292 (1982)
   PUBMED   7117543
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000065.1.
            On Feb 21, 2015 this sequence version replaced gi:45382826.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: J00843.1, X00626.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3109051 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AADN04000065.1     3864098-3864132     c
            36-98               AADN04000065.1     3863924-3863986     c
            99-293              AADN04000065.1     3862590-3862784     c
            294-377             AADN04000065.1     3861590-3861673     c
            378-434             AADN04000065.1     3861182-3861238     c
            435-532             AADN04000065.1     3860819-3860916     c
            533-610             AADN04000065.1     3860391-3860468     c
            611-688             AADN04000065.1     3860003-3860080     c
            689-741             AADN04000065.1     3859806-3859858     c
            742-804             AADN04000065.1     3859427-3859489     c
            805-919             AADN04000065.1     3859094-3859208     c
            920-1004            AADN04000065.1     3858427-3858511     c
            1005-1064           AADN04000065.1     3858188-3858247     c
            1065-1148           AADN04000065.1     3857931-3858014     c
            1149-1229           AADN04000065.1     3857592-3857672     c
            1230-1336           AADN04000065.1     3857113-3857219     c
            1337-1578           AADN04000065.1     3856377-3856618     c
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="19"
                     /map="19"
                     /breed="Red Jungle Fowl"
     gene            1..1578
                     /gene="ASL1"
                     /gene_synonym="ASL; CRYD1; D-CRY"
                     /note="argininosuccinate lyase 1"
                     /db_xref="CGNC:49838"
                     /db_xref="GeneID:396498"
     misc_feature    21..23
                     /gene="ASL1"
                     /gene_synonym="ASL; CRYD1; D-CRY"
                     /note="upstream in-frame stop codon"
     CDS             87..1487
                     /gene="ASL1"
                     /gene_synonym="ASL; CRYD1; D-CRY"
                     /EC_number="4.3.2.1"
                     /note="delta1-crystallin; delta-crystallin 1; delta
                     crystallin I"
                     /codon_start=1
                     /product="delta-1 crystallin"
                     /protein_id="NP_990832.2"
                     /db_xref="CGNC:49838"
                     /db_xref="GeneID:396498"
                     /translation="MATEGDKLLGGRFVGSTDPIMEILSSSISTEQRLTEVDIQASMA
                     YAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGD
                     IAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTH
                     LQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGALAGNPLEIDRELLRS
                     ELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDA
                     YSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLD
                     VVDTLTAVLQVATGVISTLQVNKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASG
                     KAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTA
                     QIEQLRELLKKQKEQA"
ORIGIN      
        1 acggagcgac cagccagggc tgagctgcgg agacggttgc accaggtgcc aggattgctg
       61 caaacacgag caaaacgtcg tccgaaatgg caaccgaggg ggataaactt ttgggaggaa
      121 gatttgttgg aagcacagat cccatcatgg agattctcag ctcttctata tccactgagc
      181 agagactgac tgaagttgat atccaggcaa gcatggctta tgccaaagcc ttggagaagg
      241 ctagcatcct gactaaaact gagctggaga agatcctgag tggcctggaa aagatctctg
      301 aggaatcatc taagggagtc cttgtaatga cccaaagtga tgaagatatc cagactgcca
      361 ttgaacgcag actgaaggag ctgattgggg atatagctgg aaagctgcag actggaagaa
      421 gcaggaatga acaggttgtg actgatctga aactgctcct gaagagttcc atctctgtca
      481 tctccactca cctgctgcag ctcatcaaga ccctggtgga gcgcgctgct atagaaattg
      541 atattatcat gcctggctac acccacctgc agaaagctct gcccatcaga tggagccagt
      601 tcctgctcag ccatgctgtt gcactgaccc gtgattctga gcgcctggga gaggtgaaga
      661 aaaggatcac tgtcttgcct ctgggaagtg gtgctctggc tggcaaccca ctggaaattg
      721 atagagagct tctgcgtagc gaactggaca tgacttccat caccctgaac agcatagacg
      781 ccatcagtga gagagacttt gtggtggaat taatctctgt tgccaccctg ctgatgatcc
      841 accttagcaa gctggctgaa gatctcatca tcttcagcac cactgaattt ggctttgtga
      901 ccctctctga tgcctacagc actggcagca gcctgttgcc tcagaagaag aaccctgata
      961 gcctggaact gatccgcagc aaagctggtc gtgtgtttgg acggttggct gctattctca
     1021 tggttctcaa aggaattcca agcaccttca gcaaggatct gcaggaggac aaggaagctg
     1081 tccttgatgt tgtggacact ctgactgctg tgctccaggt tgccactgga gtgatttcta
     1141 ccctccaggt caacaaggag aacatggaga aggctctgac ccctgagttg ctgtctactg
     1201 atctggctct ctacttggtt cgtaaaggaa tgccaatcag acaagcccaa actgcttctg
     1261 ggaaggccgt ccaccttgct gagactaaag gcatcaccat caataatctc accctggagg
     1321 acctgaagag catcagcccc ctgtttgcca gcgatgtctc ccaggtcttc agcgttgtca
     1381 acagtgtgga gcagtacact gccgtgggcg gtactgccaa gagcagcgtg actgcccaga
     1441 tcgagcagct gagggagctg ctgaagaagc agaaggagca ggcttagagt gtggggacat
     1501 atcccgtggc tgcagcgttg tgcttatcac actaatccag agttaataaa cactgtggtg
     1561 tattgtagtt cactgaaa
//

LOCUS       NM_001293169            3363 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus minichromosome maintenance 8 homologous recombination
            repair factor (MCM8), mRNA.
ACCESSION   NM_001293169 XM_004935291
VERSION     NM_001293169.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Nishimura K, Ishiai M, Horikawa K, Fukagawa T, Takata M, Takisawa H
            and Kanemaki MT.
  TITLE     Mcm8 and Mcm9 form a complex that functions in homologous
            recombination repair induced by DNA interstrand crosslinks
  JOURNAL   Mol. Cell 47 (4), 511-522 (2012)
   PUBMED   22771115
REFERENCE   2  (bases 1 to 3363)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000139.1 and AB689140.1.
            On Jun 3, 2014 this sequence version replaced gi:513174765.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB689140.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201361
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-121               AADN04000139.1     15673630-15673750   c
            122-2614            AB689140.1         1-2493
            2615-3363           AADN04000139.1     15658574-15659322   c
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Red Jungle Fowl"
     gene            1..3363
                     /gene="MCM8"
                     /note="minichromosome maintenance 8 homologous
                     recombination repair factor"
                     /db_xref="CGNC:6990"
                     /db_xref="GeneID:421314"
     misc_feature    77..79
                     /gene="MCM8"
                     /note="upstream in-frame stop codon"
     CDS             122..2614
                     /gene="MCM8"
                     /EC_number="3.6.4.12"
                     /note="MCM8 minichromosome maintenance deficient 8; DNA
                     replication licensing factor MCM8; minichromosome
                     maintenance complex component 8"
                     /codon_start=1
                     /product="DNA helicase MCM8"
                     /protein_id="NP_001280098.1"
                     /db_xref="CGNC:6990"
                     /db_xref="GeneID:421314"
                     /translation="MSRDLRGRGCPRGRGFQGWRGGWRGGWRGGWRGGWRGRTQKVEW
                     KRAPEPASSRLVQSTLDQFIPYKGWKLYFSEAYADKSPFVQKTQAFEKFFMQRIELYD
                     KDEIERKGSILVDYKELIEDRELTKSIPNISTELRDMPQKILQCMGLAIHQVLTKDLE
                     RHAAELQVQEGLPLDGEPIINVPLIHARLYNYEPLTQLKNVRANCYGKYIALRGTVVR
                     VSNIKPLCTKLAFVCGTCGDVQSVPLPDGKYTLPTKCLVPECRGRSFTPDRSSPLTAT
                     VDWQSVKVQELMSDDQREAGRIPRTIECELVQDLVDSCVPGDVVTITGVVKVSSTEEG
                     ASKNKNDKCVFLLYIEANSVSNSKGQKTKNFEEETFQRSFMEFSLKDLYAVQEIQAEE
                     NLFRIIVNSLCPAIYGHEIVKAGLALALFGGCQKFVDDKNRIPVRGDPHVLIVGDPGL
                     GKSQMLQAVCNVAPRGVYVCGNTSTSSGLTVTLSRDGASGDFALEAGALVLGDQGICG
                     IDEFDKMGSQHQALLEAMEQQSISLAKAGIVCSLPARTSIVAAANPVGGHYNKAKTVS
                     ENLKMGSALLSRFDLVFILLDTPNEDHDHLLSEHVMAIRAGKQAVCSSAVVSRTNVQD
                     RSVLEVVSDRPLLERLKISPGENFDAIPHQLLRKYVGYARQYVHPHLSPEAAQVLQEF
                     YLELRKQNQGASSTPITTRQLESLIRLTEARSRLELREKCTKEDAEDVIEIMKYSMLG
                     TYSDEFGKLDFERSQHGSGMSNRSQAKRFVSALSSIAERTYSNLFDLQQLRQVAKELQ
                     IRVFDFESFIESLNDQGYLLKKGSRLYQLQTM"
ORIGIN      
        1 gtttctcgcc tgcatcagag tgtgtgggca gcctcgcgcc ctacagagtc cccagcgatt
       61 tttgttaact ttgttctgat gcgttccgat ctcctctact ccgtctggcg ccgcggctga
      121 gatgagcagg gacctcaggg gcagggggtg cccccgggga cggggcttcc agggctggcg
      181 aggaggctgg cggggaggct ggcggggagg ctggcgagga ggctggcggg gaaggacgca
      241 aaaggtggag tggaagagag cgcctgagcc tgcaagttct cgactcgttc agtcaacact
      301 ggaccagttt attccgtata agggctggaa gctttatttc tctgaagctt atgctgacaa
      361 gtcacctttt gtccagaaga cacaagcctt tgaaaaattt tttatgcaac gcattgaact
      421 ttatgataag gatgaaatag aaagaaaggg aagcatcctt gtggattata aggaactgat
      481 agaagataga gaattaacca aatcaatacc aaatatatct acggagttac gggatatgcc
      541 tcagaaaata ctgcagtgca tgggtctggc aattcatcag gtgctaacca aggaccttga
      601 aaggcatgct gcagagctgc aggtgcagga agggttacca ctggatggag agcctataat
      661 aaatgttcct ctcattcatg ccagactgta caactatgag ccactaactc agctgaaaaa
      721 tgttcgggcc aactgttatg ggaaatacat tgccttgcgt ggcactgttg tacgtgtcag
      781 taacattaag cctctgtgca ctaagctagc ctttgtgtgt ggcacgtgtg gagatgttca
      841 gagtgttcct ctgcctgatg gaaagtacac tcttccaacg aagtgccttg ttcctgagtg
      901 ccgtggccgg tcattcacac ctgacaggag ctctccttta actgctacag tggattggca
      961 gtctgttaag gttcaggagc tcatgtcgga tgatcagcga gaagcaggcc gcatccctcg
     1021 cacgattgaa tgtgagctgg ttcaagatct tgtggacagt tgtgtcccag gagatgtggt
     1081 cacaattaca ggggtggtta aggtgtccag cactgaggaa ggagcatcta aaaataagaa
     1141 cgacaagtgt gtgttcttgt tgtacattga ggcaaattct gtcagcaaca gtaaaggaca
     1201 aaaaacaaag aattttgagg aggagacttt tcaacgatcc ttcatggaat tttcacttaa
     1261 ggacctctac gctgttcaag aaattcaagc tgaggaaaat ctcttcagga ttattgtgaa
     1321 ctctctttgt cctgcaatct acggccacga gattgtaaag gcaggcttgg ccctggcctt
     1381 gtttggcggg tgtcagaagt ttgtcgatga caagaacaga atcccagtgc gaggagatcc
     1441 acatgttctc attgttggag atccaggatt aggaaaaagt caaatgttgc aagcagtgtg
     1501 taacgttgct cctcgaggtg tgtatgtttg tggtaatact tccaccagct ctggcctgac
     1561 tgttacgctg tctagagatg gtgcttctgg agattttgcc ttggaagctg gtgctttagt
     1621 gcttggagat caaggtattt gtggaataga tgaatttgat aagatgggaa gccagcatca
     1681 ggctttgctg gaagccatgg aacaacaaag tatcagcctt gccaaggctg gtattgtttg
     1741 cagtttgcca gcccgaacat ctattgttgc tgcagcaaac ccagttggag ggcattataa
     1801 caaagccaaa acagtgtctg agaacttaaa aatggggagt gctttactgt caagatttga
     1861 cttagttttt attttgctgg acaccccaaa tgaagatcat gatcatttgc tgtcagagca
     1921 cgtgatggca atccgagctg ggaagcaggc agtgtgcagc agtgcagttg tgagccgtac
     1981 caacgtgcag gatcgctctg ttcttgaagt cgtttcagat cggcccctgc ttgaaagact
     2041 aaagatctca ccaggagaaa actttgatgc cattccacat cagctgctga ggaagtacgt
     2101 cggctatgct cggcagtacg ttcacccaca tttatctcca gaagctgctc aggtccttca
     2161 ggagttctat ctggagcttc ggaagcagaa ccagggagca agcagcacac caatcaccac
     2221 gaggcagctg gagtcgctga ttcgactcac ggaggcacga tcaaggctgg aattaaggga
     2281 gaaatgtacc aaggaagatg ctgaggatgt aatagaaata atgaaataca gcatgctggg
     2341 aacctactca gatgagtttg gaaaactgga ctttgaacgt tcacagcatg ggtctgggat
     2401 gagcaatcgg tcacaagcaa aaagatttgt ttctgccctt agtagtattg cagaaagaac
     2461 ttacagcaat ctctttgatt tgcaacaact tcgacaggtt gcaaaggagc tacaaatacg
     2521 agtatttgat tttgagagct ttattgaatc cctgaatgat cagggttatc tcttgaaaaa
     2581 aggctcgaga ctttatcagc ttcagactat gtgagaagag cttctgcagt aaacgttgag
     2641 acataattac tgtatcttga atggactgat gaacatggag cagtaaagca ccctgacttg
     2701 cagcctgccc caggagcacc tctggctctg ttgcttactg gaagttcctg ttcaaacatt
     2761 ggtaatgcca gcaggcttgc tagaagctca cgtaagacaa tctgtggtac tgctgcttga
     2821 ctcatcctgc aaggctgcca gcccaaacga tcctaacaac agatttcagt tctaaattgt
     2881 tggactcaca aattttaaac ctgaaatctt ttgtgagaag acagtgcaag ttgtgtcctt
     2941 agcactgcag ttcgtttgag gattttgaag tatagaaatg tttctaaaaa tttgggaact
     3001 ttcatgttga acctctgcag ctttatagct gtaagggttt tgttttttga tttgtaaccc
     3061 tttatttatt ggtcttccta acagatttta tttgaagtgc aagtctcact tatgaaagtc
     3121 tcctcgttac aatgcttaat gtgtaaaatg ggaattgtat ttttatttct cattaaatat
     3181 gatgggaata atagtaatag tgaacacttg catgggtgtt aataggtgtt atgtatgttc
     3241 acattacata ctgtgtatgt cttcttttaa ctgttctgcc acagaaggct gtctgatttt
     3301 atgaaacggg gcatgccctg atgcagtaac atagcagatg agaagctctg cataaggatt
     3361 ttt
//

LOCUS       NM_001030587            2656 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus MON1 homolog A, secretory trafficking associated
            (MON1A), mRNA.
ACCESSION   NM_001030587 XM_003641966 XM_414273
VERSION     NM_001030587.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ720812.1, AADN04000419.1 and BU243495.1.
            On or before May 31, 2014 this sequence version replaced
            gi:513204511, gi:71895458.
            
            ##Evidence-Data-START##
            CDS exon combination :: AJ720812.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMEA2201357,
                                    SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2259              AJ720812.1         290-2548
            2260-2261           AADN04000419.1     612166-612167
            2262-2645           AJ720812.1         2549-2932
            2646-2656           BU243495.1         679-689
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="12"
                     /map="12"
                     /breed="Leghorn"
     gene            1..2656
                     /gene="MON1A"
                     /note="MON1 homolog A, secretory trafficking associated"
                     /db_xref="CGNC:2109"
                     /db_xref="GeneID:415929"
     CDS             20..1669
                     /gene="MON1A"
                     /note="MON1 secretory trafficking family member A"
                     /codon_start=1
                     /product="vacuolar fusion protein MON1 homolog A"
                     /protein_id="NP_001025758.1"
                     /db_xref="CGNC:2109"
                     /db_xref="GeneID:415929"
                     /translation="MAADVHKKKGWEVPNGSLAPGDGQHAERSESPTPGLAQGTEPGA
                     GQEGAMFVHTRSYEDLTSPEDGGAVVRSPEERRGEPAEPTSMEQISKDFSELSTQLTG
                     MALDLEEEMRQSQEGKLEPSPQATRHDSVLSGKEEEDVTMDTWRMHRKHVFVLSEAGK
                     PVYSRYGSEEALSSTMGVMMALVSFLEAEKNAIRSIHADGYKVVFVRRSPLVLVAVAR
                     TRQSEQEIAHELLYIYYQILSLLTWTQLNHIFQQKQNYDLRRLLAGSERITDNLLDLM
                     AHDPSFLMGAVRCLPLAASVRDAVSTSLQQAKAKSLVFSILLSGNQLVSLVRKKDQFL
                     HPIDLHLLFNLISSSSSFREGEAWTPICLPKFNSSGFFHAHISYLEQEMDLCLLLVST
                     DREDFFTVSDCKRRFQERLRRRGVHHALQEALRTPFYSVAQVGIPDLRHFIYKSKSSG
                     LFTSPEIEAPYVREEEKERLLGLYQYLHSRAHNSSCPLKNIYFTGPRENLLAWVTSAF
                     ELYICYSPLGTKAGAISAVNKLMKWIRKEEDRLFILTPQTY"
ORIGIN      
        1 gcatgtcccg ccccaaggaa tggctgcgga tgtccacaag aagaaaggct gggaagtgcc
       61 caacgggtcc ctggcgccgg gcgatgggca gcacgcggag cgctccgaga gccccacacc
      121 ggggctggca caggggacgg agccgggtgc gggccaggag ggagccatgt tcgtgcacac
      181 ccgctcctac gaggacctga cgagccctga ggacgggggg gctgtggtgc ggagccctga
      241 ggagaggcga ggggagccgg ctgagcccac gagcatggag cagatcagca aggacttcag
      301 cgagctgagc acacagctga cgggcatggc cctcgacctg gaggaggaga tgagacagag
      361 ccaggaggga aagctggagc cgtccccaca ggccacccgc catgactcgg tgctgtcagg
      421 aaaggaggag gaggatgtga ccatggacac ctggcgcatg catcggaagc acgtcttcgt
      481 gctgagtgag gctggcaagc ccgtgtattc ccgctatggg tccgaggaag ccctctccag
      541 caccatgggt gtcatgatgg ccctggtgtc cttcctagag gccgagaaaa acgccatccg
      601 gtccatccat gcagatggct acaaggtggt ctttgtgcgg aggagcccgc tggtgctggt
      661 ggcagtggcg cggacccggc agtctgagca ggagattgcc catgagctgc tctacatcta
      721 ttaccaaatc ctgagcctgc tcacctggac tcagctcaac cacatcttcc agcagaagca
      781 gaactacgac cttcgcaggc tccttgctgg ctccgagcgc atcactgaca acctgctgga
      841 ccttatggcc cacgacccca gcttcctcat gggtgccgtg cgctgcctgc ccttggctgc
      901 cagcgtgcgg gacgccgtga gcaccagcct ccagcaggcc aaggccaaga gcttggtctt
      961 ctccatcctc ctgtcaggga accagctggt ttctctggtg aggaagaagg atcagttcct
     1021 ccaccccatc gacctccatc tgctcttcaa cctcatcagc tcctcctctt cctttcggga
     1081 gggtgaagcc tggactccca tttgcctccc taagttcaac tccagcggct tcttccacgc
     1141 tcacatctcc tacctggagc aggagatgga cctgtgcctc ctgttggtct ccactgaccg
     1201 tgaggacttc ttcacagtct ccgactgcaa gcggcgcttc caggagcgcc tgcggcggcg
     1261 cggagtgcac cacgctctgc aggaggccct gcgcaccccc ttctacagcg tcgcccaggt
     1321 gggcatccct gacctgcggc acttcatcta caagtccaag agctctgggc tcttcaccag
     1381 ccctgagatc gaggcaccct acgtgcggga ggaggagaag gaaaggctct tggggctcta
     1441 tcagtacctc cacagccggg ctcacaactc gtcgtgcccc ctgaagaaca tctacttcac
     1501 gggcccacgt gaaaacctcc tggcttgggt caccagcgcc tttgagctct acatatgcta
     1561 cagtccactg gggaccaagg cgggcgccat cagtgctgtc aacaagctca tgaagtggat
     1621 ccgcaaggag gaagaccggc tcttcatcct cacaccccag acgtactgac ggacattgcc
     1681 cagggtgtgg tgccatccgg aggacctctg ctgtgctggg gagctcgtct ctctgggaag
     1741 cctgggctgt gagccagggg agagggcacg ggggaccctg agggcatggg gaaactgccc
     1801 gacctgggtg tgagagacga ggtgcaaagc tgcccaggct atgtggtgag cagggctttc
     1861 tctcacctgc aggcaatgcc tccctcatct ggggagctgc ccttcctctg cagcccgcct
     1921 ctctgtcctt tgtgctgctg tgcccacgga gggcaggtga caacacccag ctgggcacag
     1981 ggctggccgg gacactgcca gcactgctcc tctccccgct ttgggggagc tgggcctccc
     2041 aagtgccggg cagcccctga tggtcccaga gccaggctgg aggccggcag gtttgtcccc
     2101 ctggcaccta tgtgtgccca gtccctttct actgaggcca tgagaaggat gtccttgggg
     2161 atgctgggaa gcagggcagc cccagtgaga ctcggggtac cgggatgcca ctcggtgtgc
     2221 tcgtggtgct ggctccaaag cagcagctgt ggtgtgccct cccctacccc tccctcagag
     2281 ccccagctgg catggggcac tgatgtgtct tcatcgcatc gtggggtccc ctatcctcca
     2341 aaaagcagcc ccccgagctg ggcttgctgt gcgaggacca cctcctccct gctgtcccca
     2401 gctgtcccca ggcactggcg tggggctgag caccccgcag cacggcgctg ggcacggctc
     2461 ccgccccatg aagcacaacc tgaccctgtg catagggatg ggcgtccggg aggggaaacc
     2521 cccccgcggt cacaccgagg ggccggcagg aacccggcgg ggctaacgca gggactccgc
     2581 tcccttattt atgctcctgc cagattgtag tcgcttttct ttgctcataa acattatctg
     2641 gactcaaatc gaaaaa
//

LOCUS       NM_001293103            1151 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus melatonin receptor 1B (MTNR1B), mRNA.
ACCESSION   NM_001293103 XM_417201
VERSION     NM_001293103.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Li J, Wang Z, Cao J, Dong Y and Chen Y.
  TITLE     Melatonin receptor subtypes Mel1a and Mel1c but not Mel1b are
            associated with monochromatic light-induced B-lymphocyte
            proliferation in broilers
  JOURNAL   Domest. Anim. Endocrinol. 45 (4), 206-215 (2013)
   PUBMED   24209505
  REMARK    GeneRIF: results suggest that melatonin mediates green
            light-induced bursal B-lymphocyte proliferation through melatonin
            receptor subrypes Mel1c and Mel1a receptors but not Mel1b receptors
            by activating the cyclic AMP/protein kinase A pathway
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Sundaresan NR, Marcus Leo MD, Subramani J, Anish D, Sudhagar M,
            Ahmed KA, Saxena M, Tyagi JS, Sastry KV and Saxena VK.
  TITLE     Expression analysis of melatonin receptor subtypes in the ovary of
            domestic chicken
  JOURNAL   Vet. Res. Commun. 33 (1), 49-56 (2009)
   PUBMED   18604592
REFERENCE   3  (bases 1 to 1151)
  AUTHORS   Liu F, Yuan H, Sugamori KS, Hamadanizadeh A, Lee FJ, Pang SF, Brown
            GM, Pristupa ZB and Niznik HB.
  TITLE     Molecular and functional characterization of a partial cDNA
            encoding a novel chicken brain melatonin receptor
  JOURNAL   FEBS Lett. 374 (2), 273-278 (1995)
   PUBMED   7589552
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000207.1 and U30609.1.
            On May 30, 2014 this sequence version replaced gi:513166281.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates and exon
            combination used for the transcript record were based on alignment
            to mRNA DQ178665.1 from zebra finch (Taeniopygia guttata, taxonomy
            ID 59729).
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201363,
                              SAMEA2201364 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-217               AADN04000207.1     941976-942192
            218-1151            U30609.1           2-935
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Red Jungle Fowl"
     gene            1..1151
                     /gene="MTNR1B"
                     /gene_synonym="Mel-1B-R; Mel1b"
                     /note="melatonin receptor 1B"
                     /db_xref="CGNC:12946"
                     /db_xref="GeneID:396338"
     CDS             1..1086
                     /gene="MTNR1B"
                     /gene_synonym="Mel-1B-R; Mel1b"
                     /note="Mel-1b melatonin receptor; mel1b receptor;
                     melatonin receptor type 1b variant 1; melatonin receptor
                     type 1b variant 2"
                     /codon_start=1
                     /product="melatonin receptor type 1B"
                     /protein_id="NP_001280032.1"
                     /db_xref="CGNC:12946"
                     /db_xref="GeneID:396338"
                     /translation="MLENGSLRNCCEPGGRGHFGSAEREAAAGGAPRPAWVVTALSSV
                     LIFTTVVDILGNLLVIVSVFKNRKLRNSGNAFVVSLALADLVVALYPYPLVLLAIFHN
                     GWTLGEMHCKVSGFVMGLSVIGSIFNITAIAINRYCYICHSFAYDKVYSCWNTMLYVS
                     LIWVLTVIATVPNFFVGSLKYDPRIYSCTFVQTASSYYTIAVVVIHFIVPITVVSFCY
                     LRIWVLVLQVRRRVKSETKPRLKPSDFRNFLTMFVVFVIFAFCWAPLNFIGLAVAINP
                     SEMAPKVPEWLFIISYFMAYFNSCLNAIIYGLLNQNFRNEYKRILMSLWMPRLFFQDT
                     SKGGTDGQKSKPSPALNNNDQMKTDTL"
ORIGIN      
        1 atgctggaga atggatctct gaggaactgc tgcgagccgg gcgggagggg tcacttcggc
       61 tcggcggagc gggaggcggc ggctggaggc gccccgcggc ccgcctgggt ggtgacggct
      121 ctctccagcg tgctgatctt caccaccgtg gtggacattt tgggcaacct gctggtcatc
      181 gtgtccgtct tcaagaaccg caagctcagg aactcaggta atgcatttgt ggtgagcctg
      241 gctttggctg atctggtggt ggccttgtat ccatacccac tggtgctctt agctattttc
      301 cacaatggat ggactttggg tgaaatgcac tgtaaagtga gtggctttgt gatgggacta
      361 agtgtaatag gctctatttt caacatcact gcaattgcaa taaaccgata ttgctatata
      421 tgtcatagct ttgcctatga caaagtgtat agctgttgga acacaatgct ctatgtgtcc
      481 ttaatctggg tattaacagt aattgcaact gtgccaaatt tttttgtcgg ctctctgaag
      541 tatgatccac gcatctattc atgcacattt gttcagactg caagctccta ctatacaatt
      601 gcagttgtgg taattcattt catcgtccct attactgttg tgagcttctg ctatcttcga
      661 atttgggtct tagtgcttca agttagaaga cgagtcaagt cagaaacaaa gccaagactg
      721 aaaccaagtg acttcagaaa ctttcttacc atgtttgtgg tttttgtgat ttttgccttt
      781 tgctgggcac ctctaaactt cataggactg gctgtagcca tcaatccttc agaaatggca
      841 ccaaaagttc ctgaatggtt attcattata agctacttca tggcctattt caacagctgc
      901 cttaatgcaa taatatatgg acttcttaac cagaattttc ggaatgaata caaacgtatt
      961 ttaatgtcac tgtggatgcc aaggcttttc ttccaggaca catccaaagg aggaactgat
     1021 ggacagaaga gcaagccttc tcctgcttta aacaacaatg accaaatgaa aactgacacc
     1081 ttgtaaaggg gtgatggtta atcgagaagt ttgtcatgga gagcttcatt gatagagttc
     1141 gaatgttcta g
//

LOCUS       NM_001290554            3006 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus solute carrier family 4 member 1 (Diego blood group)
            (SLC4A1), mRNA.
ACCESSION   NM_001290554
VERSION     NM_001290554.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3006)
  AUTHORS   Weber RE, Voelter W, Fago A, Echner H, Campanella E and Low PS.
  TITLE     Modulation of red cell glycolysis: interactions between vertebrate
            hemoglobins and cytoplasmic domains of band 3 red cell membrane
            proteins
  JOURNAL   Am. J. Physiol. Regul. Integr. Comp. Physiol. 287 (2), R454-R464
            (2004)
   PUBMED   15087282
  REMARK    GeneRIF: The cdB3 interaction is strongly dependent on pH and the
            number of negative and positive charges of the peptide and at the
            effector binding site, respectively.
REFERENCE   2  (bases 1 to 3006)
  AUTHORS   Gabrielli MG, Cox JV, Materazzi G and Menghi G.
  TITLE     Cell type-specific and developmentally regulated expression of the
            AE1 anion exchanger in the chicken chorioallantoic membrane
  JOURNAL   Histochem. Cell Biol. 121 (3), 189-199 (2004)
   PUBMED   14963713
  REMARK    GeneRIF: Basolateral AE1 plays role in bicarbonate reabsorption
            that is required in the embryo for maintaining acid-base balance
            during development.
REFERENCE   3  (bases 1 to 3006)
  AUTHORS   Cox KH, Adair-Kirk TL and Cox JV.
  TITLE     Four variant chicken erythroid AE1 anion exchangers. Role of the
            alternative N-terminal sequences in intracellular targeting in
            transfected human erythroleukemia cells
  JOURNAL   J. Biol. Chem. 270 (34), 19752-19760 (1995)
   PUBMED   7649985
REFERENCE   4  (bases 1 to 3006)
  AUTHORS   Cox KH and Cox JV.
  TITLE     Variant chicken AE1 anion exchangers possess divergent
            NH(2)-terminal cytoplasmic domains
  JOURNAL   Am. J. Physiol. 268 (3 PT 2), F503-F513 (1995)
   PUBMED   7900851
REFERENCE   5  (bases 1 to 3006)
  AUTHORS   Kim HR, Yew NS, Ansorge W, Voss H, Schwager C, Vennstrom B, Zenke M
            and Engel JD.
  TITLE     Two different mRNAs are transcribed from a single genomic locus
            encoding the chicken erythrocyte anion transport proteins (band 3)
  JOURNAL   Mol. Cell. Biol. 8 (10), 4416-4424 (1988)
   PUBMED   3185555
REFERENCE   6  (bases 1 to 3006)
  AUTHORS   Cox JV and Lazarides E.
  TITLE     Alternative primary structures in the transmembrane domain of the
            chicken erythroid anion transporter
  JOURNAL   Mol. Cell. Biol. 8 (3), 1327-1335 (1988)
   PUBMED   2835670
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from M23404.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: M23404.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3006              M23404.1           1-3006
FEATURES             Location/Qualifiers
     source          1..3006
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
     gene            1..3006
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /note="solute carrier family 4 member 1 (Diego blood
                     group)"
                     /db_xref="CGNC:49859"
                     /db_xref="GeneID:396532"
     misc_feature    41..43
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /note="upstream in-frame stop codon"
     CDS             77..2845
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /note="erythroid anion exchanger 1; erythrocyte anion
                     transport protein; solute carrier family 4, anion
                     exchanger, member 1 (erythrocyte membrane protein band 3,
                     Diego blood group)"
                     /codon_start=1
                     /product="band 3 anion transport protein"
                     /protein_id="NP_001277483.1"
                     /db_xref="CGNC:49859"
                     /db_xref="GeneID:396532"
                     /translation="MEGPGQDTEDALRRSLDPEGYEDTKGSRTSLGTMSNPLVSDVDL
                     EAAGSRQPTAHRDTYEGYVELHELVLDSRKDPCWMEAGRWLHLEESMEPGGAWGSHLP
                     LLTYHSLLELHRAFAKGVVLLDVAANSLAAVAHVLLDQLIYEGQLKPQHRDDVLRALL
                     LRHKHPSEAESVWTLPAAQLQCSDGEQKDADERALLRDQRAVEMRELHGAGQSPSRAQ
                     LGPQLHQQLPEDTEATLVLVACAAFLEQPLLALVRLGAPCPDAVLAVPLPVRFVLTVL
                     GPDSPRLSYHEIRRAAATVMADRVFRRDAYLCGGRAELLGGLQGFLEASIVLPPQEVP
                     SEQHLHALIPLQRHAVRRRYQHPDTVRSPGGPTAPKDTGDKGQAPQDDDPLLRTRRPF
                     GGLVRDIRRRYPKYLSDIRDALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRGMMGV
                     SELLLSTSVQCLLFSLLSAQPLLVVGFSGPLLVFEEAFFRFCEDHGLEYIVGRVWIGF
                     WLILLVLLVVACEGTVLVRYLSRYTQEIFSFLISLIFIYETFAKLVTIFEAHPLQQSY
                     DTDVSTEPSVPKPNTALLSLVLMAGTFFLALFLRQFKNSVFLPGKVRRLIGDFGVPIS
                     IFVMALADFFIKDTYTQKLKVPRGLEVTNGTARGWFIHPMGSATPFPIWMMFASPVPA
                     LLVFILIFLETQITTLIVSKPERKLVKGSGFHLDLLLIVAMGGLAALFGMPWLSATTV
                     RTITHANALTVVGKSAVPGERAHIVEVKEQRLSGLLVAVLIGVSILMEPILKYIPLAV
                     LFGIFLYMGVTSLFGIQLFDRILLLLMPPKYHPKEPYVTRVKTWRITSSPLTQILVVA
                     LLWGVKVSPASLRCPFVLVLTVPLRRLLLPRIFSEIELKCLDTDDAVVTFEEAEGQDV
                     YNEVQMPS"
     misc_feature    1325..1396
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1421..1483
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1493..1543
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1571..1633
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1670..1738
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1820..1882
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    1916..1978
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    2099..2161
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    2210..2266
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    2267..2320
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    2390..2452
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
     misc_feature    2453..2509
                     /gene="SLC4A1"
                     /gene_synonym="AE1; EAT"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
                     transmembrane region"
ORIGIN      
        1 ggcggcggcg tccccagagc ggggcatggt gccgccaaga tgagcgccgg cacgcagcgg
       61 gggggtgagt ggagccatgg aggggcccgg ccaggacacc gaggacgcgc tacgcaggag
      121 cctggacccc gagggctacg aggacaccaa gggctccagg acatccctgg ggacgatgag
      181 caatccattg gtgagcgatg tggacctgga ggcggcgggg agccgacagc ccacggccca
      241 cagggacacc tatgagggct acgtggagct gcacgagttg gtgctggaca gcaggaagga
      301 tccgtgctgg atggaggccg ggcgctggct gcatctggag gagagcatgg agccgggggg
      361 ggcgtggggc agccacctcc ccctgctcac ctaccacagc ctgctggagc tgcaccgcgc
      421 cttcgccaaa ggcgttgtgc tgctcgacgt ggcggccaac tcgctggcag ccgtggccca
      481 cgtgctgctg gatcagctca tctacgaggg gcagctgaag ccgcagcacc gcgacgacgt
      541 cctgcgggcg ctgctgctgc ggcacaagca ccccagtgag gccgagtcgg tgtggacgct
      601 gccggcggcg cagctgcagt gctcggacgg ggagcagaag gacgcggacg agcgcgcact
      661 gctgcgggac cagcgggctg tggagatgag ggagctgcat ggggccggcc agagcccctc
      721 cagggcgcag ctcggcccac agctccacca gcagctcccc gaggacaccg aggccacgct
      781 ggtgctcgtg gcctgcgcag cgttcctgga gcagccgctg ttggcgttgg tgcggctcgg
      841 cgcgccgtgt ccggacgcgg tgctggccgt gccgctgccc gtgcgcttcg tgctgacggt
      901 gttgggcccc gacagccccc gcctcagcta ccacgagatc cgccgcgccg ccgccaccgt
      961 catggccgac cgggtgttcc gccgggacgc ctacctgtgc gggggccgtg cggagctgct
     1021 gggggggctg cagggcttcc tggaggccag catcgttctg ccgccccaag aggtgcccag
     1081 cgagcagcac ctgcatgccc tgatcccact gcagcgccac gctgtccgcc gccgctacca
     1141 gcaccccgac accgtgcgca gccccggcgg ccccacggcc cccaaagaca caggggataa
     1201 gggccaggct ccgcaggacg acgaccccct gctccggacg aggcggccgt ttggggggtt
     1261 ggtgagggac atccgccgcc gttaccccaa atacctcagt gacatcaggg atgcgctcaa
     1321 cccgcagtgc ctggcagccg tcatcttcat ctacttcgca gcgctgtcgc ccgccatcac
     1381 cttcgggggt ttgctgggtg agaagacccg cggtatgatg ggggtgtcgg agctgctgct
     1441 ctccaccagc gtgcagtgtt tgctcttcag tctgctgagc gcgcagcctc tgctcgtcgt
     1501 cggcttctcg gggccactgc tggtctttga ggaggctttc ttcaggttct gtgaggatca
     1561 tggcctggag tacatcgtgg gccgggtgtg gatcggcttc tggctcatcc tgctggtgct
     1621 gctggtggtg gcctgcgagg gcaccgtcct ggtgcgctac ctgtcccgat acacgcagga
     1681 gatcttctcc ttcctcatct ccctcatctt catctatgag accttcgcca aactcgtcac
     1741 gatcttcgag gcccacccgc tgcagcagag ctacgacacg gacgtcagca cggagccctc
     1801 cgtgcccaaa cccaacacgg cgctgctgtc cctcgtgctc atggccggca ccttcttcct
     1861 cgccctcttc ctccgtcagt tcaagaacag tgtgttcctg cccggcaagg tgcggcggct
     1921 gatcggggac ttcggggtgc ccatctccat cttcgtcatg gccctggctg acttcttcat
     1981 caaggacacc tacacgcaga agctgaaggt gcccagaggg ctggaggtga ccaacggcac
     2041 cgcccgcggt tggttcatcc accccatggg cagcgccacc cccttcccca tctggatgat
     2101 gttcgcctcg ccggtgcccg ccctcctggt cttcatcctc atcttcctcg agacgcagat
     2161 caccaccctc atcgtcagca aaccggagcg gaagctggtg aagggctcgg ggttccacct
     2221 ggacctgctg ctcatcgtgg ccatgggcgg cctggccgcg ctcttcggca tgccctggct
     2281 gagcgccacc acggtgcgca ccatcacgca cgccaacgcg ctcaccgtcg tgggtaagag
     2341 cgccgtgccg ggggagaggg cccacatcgt ggaggtgaag gagcagcggc tcagcgggct
     2401 gctggtggcc gtgctgatcg gcgtctccat cctgatggag cccatcctga agtacatccc
     2461 gctggcggtg ctcttcggca tcttcctcta catgggcgtc acgtcgctct tcggcatcca
     2521 gctcttcgac cgcattctgc tgctgctcat gccccccaag taccacccca aggagccgta
     2581 cgtcacccgg gtgaagacgt ggcggatcac atcttcaccc ctgacgcaga tcctcgtcgt
     2641 ggcgctgctg tggggggtga aggtcagccc ggcctccctg cgctgccctt tcgtcctcgt
     2701 cctcaccgtg ccgctgcggc gccttctgct gccccgcatc ttcagcgaga tcgagctcaa
     2761 atgcctggac acggacgacg cagtggtgac atttgaagag gcggagggcc aggacgtgta
     2821 caacgaggtg cagatgccca gctaaggtcc cgccgtgccc ccacccacgt gtagatccac
     2881 catcgccccc cagagccgcg tcctgcccag accgtcccgc tatgccgccc agcgtcccgg
     2941 ggtagggatg gaacagccca gcacaggggg tagggtttgt aacgcagaga atcgctgcaa
     3001 aaacac
//

LOCUS       NM_205054               1273 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus pepsinogen 3, group I (pepsinogen A) (PGA3), mRNA.
ACCESSION   NM_205054
VERSION     NM_205054.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Watanuki K and Yasugi S.
  TITLE     Analysis of transcription regulatory regions of embryonic chicken
            pepsinogen (ECPg) gene
  JOURNAL   Dev. Dyn. 228 (1), 51-58 (2003)
   PUBMED   12950079
  REMARK    GeneRIF: An analysis of the transcription regulatory regions of
            pepsinogen was made.
REFERENCE   2  (bases 1 to 1273)
  AUTHORS   Hayashi K, Agata K, Mochii M, Yasugi S, Eguchi G and Mizuno T.
  TITLE     Molecular cloning and the nucleotide sequence of cDNA for embryonic
            chicken pepsinogen: phylogenetic relationship with prochymosin
  JOURNAL   J. Biochem. 103 (2), 290-296 (1988)
   PUBMED   3131317
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from D00215.1.
            On May 15, 2013 this sequence version replaced gi:45384243.
            
            ##Evidence-Data-START##
            Transcript exon combination :: D00215.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201364 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1273              D00215.1           1-1273
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="26"
                     /map="26"
     gene            1..1273
                     /gene="PGA3"
                     /note="pepsinogen 3, group I (pepsinogen A)"
                     /db_xref="CGNC:49555"
                     /db_xref="GeneID:395926"
     CDS             17..1168
                     /gene="PGA3"
                     /EC_number="3.4.23.1"
                     /note="embryonic pepsinogen"
                     /codon_start=1
                     /product="embryonic pepsinogen precursor"
                     /protein_id="NP_990385.1"
                     /db_xref="CGNC:49555"
                     /db_xref="GeneID:395926"
                     /translation="MRSLALLCAVLALSDGITRLPLERGKKLREILREKGLLHHFLQH
                     HRYDIGTKFPHAFPDVLTVVTEPLLNTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWV
                     PSVSCTSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTGDMEGTVGCDTVTVASLMDTN
                     QLFGLSTSEPGQFFVYVKFDGILGLGYPSLAADGITPVFDNMVNESLLEQNLFSVYLS
                     REPMGSMVVFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQEIACSSGCQAIID
                     TGTSLVAGPASDINDIQSAVGANQNTYGEYSVNCSHILAMPDVVFVIGGIQYPVPALA
                     YTEQNGQGTCMSSFQNSSADLWILGDVFIRVYYSIFDRANNRVGLAKAI"
     sig_peptide     17..64
                     /gene="PGA3"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="{ECO:0000255}; propagated from UniProtKB/Swiss-Prot
                     (P16476.1)"
     mat_peptide     65..1165
                     /gene="PGA3"
                     /product="Embryonic pepsinogen"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P16476.1)"
     regulatory      1259..1264
                     /regulatory_class="polyA_signal_sequence"
                     /gene="PGA3"
ORIGIN      
        1 ctgcatccct ggcacaatgc gatccctggc gctcctgtgc gcggtccttg ctctctccga
       61 tggcatcacc aggctgccct tggaaagggg gaagaagctg agagagatcc tcagggagaa
      121 gggcttgctg caccacttcc tccagcatca ccgctacgac atcggcacca aattcccaca
      181 tgcttttcct gatgtgctca ccgtggtcac cgaacccctg ctgaacaccc tggacatgga
      241 atactatggg accatctcca ttggcacccc accgcaggac ttcactgtgg tcttcgacac
      301 cggctcctcc aacctctggg ttccctctgt ctcctgcacc agcccagcct gccaaagcca
      361 tcagatgttt aacccatcgc agtcctccac ctacaaaagc acagggcaga acctgtccat
      421 tcactatggc actggtgaca tggagggcac cgtgggctgc gacaccgtca ctgttgcatc
      481 actgatggac accaaccagc tctttggctt gagtacctct gagcctggcc aattctttgt
      541 ctatgtcaaa tttgatggga tcttgggctt gggctaccca agtttagcag ctgatggaat
      601 cactccggtc tttgataaca tggtgaatga gagcttgctg gagcagaacc tcttctcagt
      661 ctatctatcc cgtgagccaa tggggagcat ggtcgtcttc gggggaatcg atgagtccta
      721 tttcactggc tccatcaact ggattcctgt ctcttaccaa ggatactggc agatctccat
      781 ggacagcatc attgtgaaca agcaggagat tgcgtgcagc agcggctgcc aggccatcat
      841 tgacactggc acatccctcg tggccgggcc ggcctcggac attaacgaca tccaaagcgc
      901 agtcggggcc aatcagaaca cgtatggaga gtacagtgtg aactgcagcc acatccttgc
      961 catgcctgac gttgtctttg tcatcggtgg cattcagtat cccgtgcctg ccttggctta
     1021 caccgagcag aatggccaag gaacctgcat gagcagcttc cagaacagct ctgcagacct
     1081 ctggatcttg ggagacgtct tcatcagagt gtactacagc atcttcgacc gggccaacaa
     1141 ccgtgttgga ctggccaagg ctatttagat ctactgagat gacagcactc aaccaggcca
     1201 tggctgtgtt tttcagagca gcaagaggcc tcttgtaagg tgtccttgcc tgcatgcaaa
     1261 taaaatgttg atg
//

LOCUS       NM_001277841            1731 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus SEC13 homolog, nuclear pore and COPII coat complex
            component (SEC13), mRNA.
ACCESSION   NM_001277841 XM_414450
VERSION     NM_001277841.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
            Korn B and Buerstedde JM.
  TITLE     A large database of chicken bursal ESTs as a resource for the
            analysis of vertebrate gene function
  JOURNAL   Genome Res. 10 (12), 2062-2069 (2000)
   PUBMED   11116100
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX934554.2, AJ396688.1, BU334051.1 and BG269901.1.
            On Apr 24, 2013 this sequence version replaced gi:363738752.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX934554.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-397               BX934554.2         1-397
            398-700             AJ396688.1         210-512
            701-1438            BU334051.1         9-746
            1439-1731           BG269901.1         12-304              c
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="12"
                     /map="12"
                     /breed="Leghorn"
     gene            1..1731
                     /gene="SEC13"
                     /gene_synonym="SEC13L1"
                     /note="SEC13 homolog, nuclear pore and COPII coat complex
                     component"
                     /db_xref="CGNC:6381"
                     /db_xref="GeneID:416119"
     CDS             51..1013
                     /gene="SEC13"
                     /gene_synonym="SEC13L1"
                     /note="SEC13-like 1"
                     /codon_start=1
                     /product="protein SEC13 homolog"
                     /protein_id="NP_001264770.1"
                     /db_xref="CGNC:6381"
                     /db_xref="GeneID:416119"
                     /translation="MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
                     GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTYEYTGH
                     DSSVNSVCWAPHDYGLILACGSSDGAISLLSYTGDGQWEVKKISNAHTIGCNAVSWAP
                     AVVPGSLIEQPSGQKPNYIKRFASGGCDNLVKIWKEEDGQWKEEQKLEAHSDWVRDVA
                     WAPSIGLPTSTIASCSQDGRVFIWTCDDASGSSWSPKLLHKFNDVVWHVSWSITANIL
                     AVSGGDNKVTLWKESVDGLWACISDVNKGQGGVSAVPEGQQNEQ"
ORIGIN      
        1 cgcccgccga ccgatcgccg cccgccgttc cacggcccgc agccgccgcc atggtttccg
       61 tcattaacac cgtggacacc tctcacgagg acatgataca cgatgcgcag atggattact
      121 atggcactcg gctagcgacc tgttcttcag acagatctgt gaaaatcttt gatgttcgga
      181 atggagggca gatcctcatt gcggacctaa gagggcatga aggtccagtg tggcaagttg
      241 cctgggctca tcctatgtac ggaaacatct tggcttcctg ctcctatgac aggaaggtta
      301 ttatctggaa ggaagaaaat ggcacttggg aaaagaccta tgagtacaca gggcatgatt
      361 cctcagtgaa ttctgtctgc tgggcaccac acgactacgg actgatactg gcctgcggga
      421 gctctgatgg tgcaatttca ttactgagct acactggtga cgggcagtgg gaagtcaaaa
      481 agatcagcaa tgcacatact attggatgta atgcagttag ctgggctcct gctgttgtac
      541 caggcagcct tatagagcaa ccatctggtc aaaaaccaaa ctacatcaaa agatttgcat
      601 ctggtggttg tgacaacctt gtcaagatct ggaaagaaga agatggtcag tggaaagaag
      661 agcagaagct ggaggcacac agtgactggg ttcgagatgt agcctgggct ccatccatag
      721 gcttgccaac aagtaccatt gctagctgtt cacaggatgg cagagtgttt atctggacat
      781 gcgatgatgc ctctggaagt tcatggtcac caaaattgct gcacaagttc aatgatgttg
      841 tctggcatgt gagttggtcc attactgcaa atatacttgc agtgtctgga ggagacaata
      901 aagtcacact gtggaaggaa tcggtagatg ggctgtgggc atgcatcagc gatgtcaaca
      961 agggccaagg aggagtgtct gccgttccag aagggcagca gaatgagcag tgatgcggga
     1021 ctgaccagcc cagctgctgg aagcgatcac tatacctgat ttgcaatgtt tcttgaatca
     1081 gatgagaact ggttttatcc aaactggacg tgaacatggg gaaataacta tccaatttta
     1141 tgagcactct taaccaatac ttggaggcta ctatgtgttg ataatcagcc ttaattgaca
     1201 ttcccttaaa ttaaagatga agagaggagc aaagtactgt gccttgtgct actccctgat
     1261 actgtaaaaa ttgtaacctg ccttctggtt taggagtcag atttaattgg atacacttca
     1321 agcatgcgag caggaacagg aggaggcagg caatgaaagt gctcatgtgt gaacccatct
     1381 gtgtaagggg caaatactct gccactcaaa ggccaaaact atttcaagtg acagggtggg
     1441 ctggtggagt tagcagtaga cagcattctg gtggtactga aatggtgctt gggtttccct
     1501 gaaagtaatg tgctcagata catgaaaatc tccatgcatt cccaaagatg aaaaagagta
     1561 gcagaacgca tatgtatttt gctttacagt aatctcaaac ttgtttattt aacaaacatc
     1621 aacaaatgaa aatacaattt gaagactttt ttttagccac aattctatac tgtacctcag
     1681 gtttttgttt agacaacaaa ataaagtctt attggttaaa gcctgaaaaa a
//

LOCUS       NM_001277715            1025 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus IMP4 homolog, U3 small nucleolar ribonucleoprotein
            (IMP4), mRNA.
ACCESSION   NM_001277715 XM_003641728
VERSION     NM_001277715.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX929657.2 and BU218418.1.
            On Apr 14, 2013 this sequence version replaced gi:363736930.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX929657.2, CR386362.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1016              BX929657.2         1-1016
            1017-1025           BU218418.1         264-272
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="9"
                     /map="9"
                     /breed="Leghorn"
     gene            1..1025
                     /gene="IMP4"
                     /note="IMP4 homolog, U3 small nucleolar ribonucleoprotein"
                     /db_xref="CGNC:65804"
                     /db_xref="GeneID:100857200"
     misc_feature    31..33
                     /gene="IMP4"
                     /note="upstream in-frame stop codon"
     CDS             58..930
                     /gene="IMP4"
                     /note="U3 small nucleolar ribonucleoprotein protein
                     IMP4-like; IMP4, U3 small nucleolar ribonucleoprotein,
                     homolog"
                     /codon_start=1
                     /product="U3 small nucleolar ribonucleoprotein protein
                     IMP4"
                     /protein_id="NP_001264644.1"
                     /db_xref="CGNC:65804"
                     /db_xref="GeneID:100857200"
                     /translation="MLRRQARERREYLQRRAQEERLRRQQDKKEQLRQALDENRLLPT
                     ELRRQALALQKELEFETPGENGVTGSQDDEYRWAGLEPPKVMVTTSRDPSARLRVFAK
                     ELCLVIPGARRLNRGRAEVGALVSACRAAGVTDLLVVHETRGQPDGLVLCHLPHGPTA
                     HFTLSGAVLRHEVGGLGGAPLGAPHILLHRLDSALGRRVGTILKHLFPVPRPQTRRVV
                     TFANEDDVILVRNHVYRRQGKTVELEEVGPRFQLRPYLIRLGTLEQGDAADVEWRWHP
                     YTTTARKRQLLSLT"
ORIGIN      
        1 caacggcggc ggtgtttgga ggcgccggtg tgaggagaga gcggtgcggc tgcagctatg
       61 cttcgccgcc aggcccgtga gcgccgtgag tacctgcagc gccgggcgca ggaggagcgg
      121 ctgagacggc agcaggataa gaaggagcag ctgagacagg ccctggatga gaaccgactg
      181 ctgcccactg agctgaggcg ccaggcactg gccttgcaga aggagctgga gtttgagaca
      241 ccaggggaaa atggtgtgac aggcagccag gatgatgagt accggtgggc agggctggag
      301 ccccccaagg tgatggtgac aacctcgcgt gaccccagtg cccgcctccg tgtctttgcc
      361 aaggagctgt gcctggtgat cccaggggca cggcggctga accggggccg ggcagaggta
      421 ggggccctgg tgagtgcgtg ccgggcggct ggcgtcactg acctgctggt ggtgcatgag
      481 acccgtggac agcctgatgg actggtgctg tgccacctgc cccacggccc cacagcccac
      541 ttcacactga gcggggctgt gctgaggcac gaggtggggg gtcttggtgg agctccccta
      601 ggagcaccac acatcttgct gcaccgactg gacagcgcgc tgggacgtcg ggtagggacc
      661 atcctcaagc acctcttccc tgttccccgg ccccagaccc gccgcgtggt gacttttgcc
      721 aacgaagatg acgtcatcct tgtccggaac catgtttacc gtcgccaggg gaagacagtg
      781 gagctagagg aggtgggacc ccgcttccag ctacgcccct acctgatccg ccttgggacc
      841 ctggagcaag gggatgccgc tgatgtggaa tggcgttggc acccctacac caccactgcc
      901 cgcaagcgcc agctgctgag tctcacctga gtgttgtcac ctcctgttgc ctgaactact
      961 ggcattctgc tggctcagat gacattttca ataatatata tttttccact ttttccacac
     1021 caaaa
//

LOCUS       NM_001277631            1133 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus RNA polymerase I subunit C (POLR1C), transcript
            variant 2, mRNA.
ACCESSION   NM_001277631
VERSION     NM_001277631.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000139.1, BX929977.2, AJ444864.1 and BU338692.1.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon compared to variant 1. The resulting protein (isoform 2) is
            shorter compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX929977.2, BU229232.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03354475, SAMN03354491
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                AADN04000139.1     1602039-1602054
            17-353              BX929977.2         1-337
            354-394             AJ444864.1         41-81
            395-722             BX929977.2         379-706
            723-760             AJ444864.1         530-567
            761-917             BX929977.2         745-901
            918-1128            BU338692.1         396-606
            1129-1133           AADN04000139.1     1605359-1605363
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Red Jungle Fowl"
     gene            1..1133
                     /gene="POLR1C"
                     /note="RNA polymerase I subunit C"
                     /db_xref="CGNC:7876"
                     /db_xref="GeneID:421452"
     CDS             13..933
                     /gene="POLR1C"
                     /note="isoform 2 is encoded by transcript variant 2;
                     polymerase (RNA) I polypeptide C, 30kDa; polymerase (RNA)
                     I subunit C"
                     /codon_start=1
                     /product="DNA-directed RNA polymerases I and III subunit
                     RPAC1 isoform 2"
                     /protein_id="NP_001264560.1"
                     /db_xref="CGNC:7876"
                     /db_xref="GeneID:421452"
                     /translation="MAAKRSMDELRERVVLGEFGVRNVHTTDFPGNYPGYDDAWDQRR
                     FEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQ
                     DEILAHRLGLIPIRADPRLFEYRNQVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIA
                     LLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFS
                     PGVIEIQNIKGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGIL
                     PPDVLVTEAIKILMGKCQRFLNELDSVPME"
ORIGIN      
        1 cttccggcgg cgatggcggc caagaggagc atggacgagt tgagggagcg cgtggtgctg
       61 ggcgagttcg gcgtccgcaa cgtccacacc accgacttcc ccggcaacta ccccggctac
      121 gacgacgcgt gggaccagcg gcgcttcgag gaggcgttcc gcgtggacgt ggtgcgggag
      181 gaggacggcg tgctggagtt cgacatggtg ggcatcgacg cggccatcgc caacgccttc
      241 cgccgcatcc tgctcgccga ggtgccaacg atggctgtgg agaaagtgtt tgtgtacaac
      301 aacacgtcca tcgtgcagga tgagatcctg gcgcaccgcc tgggccttat ccccatccgg
      361 gccgaccctc gactctttga gtacaggaat caagtgtaca gtaagcacat gacatgggtg
      421 cccttgggga atcagacaga cctctttccg gatgctgact tccgacctgt ccatgatgac
      481 atcctcatag cactgttgcg acctgggcag gaaatagatg tgctcatgca ctgtgtcaag
      541 ggcataggta aagatcatgc caagttctct cctgtggcca cagctagtta tcgactgctt
      601 cctgacatta ctctcctgca gcctgttgag gatgaggcag ccgagacgtt acagaagtgc
      661 ttttcccctg gagtcattga gatccagaac atcaagggaa aaaaggtggc aagagtagcc
      721 aacgcacggt tggacacatt cagcagggaa gtcttccgac atgagggtct gaaaaacctt
      781 gtgcgcctgg caagagtgcg aaatcattac atcttttcag tggagtcgac aggtatcttg
      841 cctccagatg tgctggtgac cgaagccatc aagatactga tgggaaagtg tcagcgtttc
      901 ctgaatgaac tggacagcgt gcctatggag tgagcacgct gtagccaaga agcagaaccc
      961 tgtgctgctg ttttgggctt cctgctccag cctgcaggag tggttcttct gccctaggca
     1021 tgagttttga gatggatttg ttaagagccc tgggaccatc tctttgaact ggttttgtgt
     1081 gtgatgagcc tcagtgagga gatgcaccaa aataaaagct ttcttttacc tcc
//

LOCUS       NM_001277630            1253 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus RNA polymerase I subunit C (POLR1C), transcript
            variant 1, mRNA.
ACCESSION   NM_001277630 XM_001234461 XM_419502
VERSION     NM_001277630.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1253)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX934152.2, BU224670.1 and AADN04000139.1.
            On or before Apr 13, 2013 this sequence version replaced
            gi:363731836, gi:363731837.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer protein (isoform 1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data from different strains because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX934152.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1037              BX934152.2         2-1038
            1038-1038           BU224670.1         543-543
            1039-1229           BX934152.2         1040-1230
            1230-1253           AADN04000139.1     1605340-1605363
FEATURES             Location/Qualifiers
     source          1..1253
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..1253
                     /gene="POLR1C"
                     /note="RNA polymerase I subunit C"
                     /db_xref="CGNC:7876"
                     /db_xref="GeneID:421452"
     CDS             13..1053
                     /gene="POLR1C"
                     /note="isoform 1 is encoded by transcript variant 1;
                     polymerase (RNA) I polypeptide C, 30kDa; polymerase (RNA)
                     I subunit C"
                     /codon_start=1
                     /product="DNA-directed RNA polymerases I and III subunit
                     RPAC1 isoform 1"
                     /protein_id="NP_001264559.1"
                     /db_xref="CGNC:7876"
                     /db_xref="GeneID:421452"
                     /translation="MAAKRSMDELRERVVLGEFGVRNVHTTDFPGNYPGYDDAWDQRR
                     FEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQ
                     DEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQFQLKIKCSRNPQAAKESSDPN
                     ELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGI
                     GKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFSPGVIEIQNIKGKKVARVA
                     NARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGKCQ
                     RFLNELDSVPME"
ORIGIN      
        1 cttccggcgg cgatggcggc caagaggagc atggacgagt tgagggagcg cgtggtgctg
       61 ggcgagttcg gcgtccgcaa cgtccacacc accgacttcc ccggcaacta ccccggctac
      121 gacgacgcgt gggaccagcg gcgcttcgag gaggcgttcc gcgtggacgt ggtgcgggag
      181 gaggacggcg tgctggagtt cgacatggtg ggcatcgacg cggccatcgc caacgccttc
      241 cgccgcatcc tgctcgccga ggtgccaacg atggctgtgg agaaagtgtt tgtgtacaac
      301 aacacgtcca tcgtgcagga tgagatcctg gcgcaccgcc tgggccttat ccccatccgg
      361 gccgaccctc gactctttga gtacaggaat caaggagatg aagaggggac agaaattgat
      421 actctgcagt ttcagctgaa aataaaatgc agccggaatc ctcaggcagc caaggaatca
      481 tctgacccaa atgaactgta tttcaatcac aaagtgtaca gtaagcacat gacatgggtg
      541 cccttgggga atcagacaga cctctttccg gatgctgact tccgacctgt ccatgatgac
      601 atcctcatag cactgttgcg acctgggcag gaaatagatg tgctcatgca ctgtgtcaag
      661 ggcataggta aagatcatgc caagttctct cctgtggcca cagctagtta tcgactgctt
      721 cctgacatta ctctcctgca gcctgttgag gatgaggcag ccgagacgtt acagaagtgc
      781 ttttcccctg gagtcattga gatccagaac atcaagggaa aaaaggtggc aagagtagcc
      841 aacgcacggt tggacacatt cagcagggaa gtcttccgac atgagggtct gaaaaacctt
      901 gtgcgcctgg caagagtgcg aaatcattac atcttttcag tggagtcgac aggtatcttg
      961 cctccagatg tgctggtgac cgaagccatc aagatactga tgggaaagtg tcagcgtttc
     1021 ctgaatgaac tggacagcgt gcctatggag tgagcacgct gtagccaaga agcagaaccc
     1081 tgtgctgctg ttttgggctt cctgctccag cctgcaggag tggttcttct gccctaggca
     1141 tgagttttga gatggatttg ttaagagccc tgggaccatc tctttgaact ggttttgtgt
     1201 gtgatgagcc tcagtgagga gatgcaccaa aataaaagct ttcttttacc tcc
//

LOCUS       NM_001271966            1033 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus calcitonin related polypeptide alpha (CALCA),
            transcript variant 4, mRNA.
ACCESSION   NM_001271966
VERSION     NM_001271966.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
  TITLE     Calcitonin directly increases adrenocorticotropic
            hormone-stimulated corticosterone production in the hen adrenal
            gland
  JOURNAL   Poult. Sci. 88 (10), 2199-2205 (2009)
   PUBMED   19762876
  REMARK    GeneRIF: Calcitonin acts directly on adrenocortical cells via its
            receptor binding and increases responsiveness of ACTH on
            corticosterone production in the laying hen.
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
            and Ramachandran R.
  TITLE     Identification of calcitonin expression in the chicken ovary:
            influence of follicular maturation and ovarian steroids
  JOURNAL   Biol. Reprod. 77 (4), 626-635 (2007)
   PUBMED   17582014
  REMARK    GeneRIF: Ovarian CALCA is possibly involved in regulating
            follicular maturation in the chicken ovary.
REFERENCE   3  (bases 1 to 1033)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   4  (bases 1 to 1033)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   5  (bases 1 to 1033)
  AUTHORS   Tirunagaru VG, Sofer L, Cui J and Burnside J.
  TITLE     An expressed sequence tag database of T-cell-enriched activated
            chicken splenocytes: sequence analysis of 5251 clones
  JOURNAL   Genomics 66 (2), 144-151 (2000)
   PUBMED   10860659
REFERENCE   6  (bases 1 to 1033)
  AUTHORS   Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
            Jullienne A, Moukhtar MS and Lasmoles F.
  TITLE     Sequence and expression of the chicken calcitonin gene
  JOURNAL   FEBS Lett. 223 (1), 63-68 (1987)
   PUBMED   3666142
REFERENCE   7  (bases 1 to 1033)
  AUTHORS   Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
            Matsuo,H.
  TITLE     Isolation and determination of the amino acid sequence of chicken
            calcitonin I from chicken ultimobranchial glands
  JOURNAL   J. Biochem. 100 (2), 459-467 (1986)
   PUBMED   3782060
REFERENCE   8  (bases 1 to 1033)
  AUTHORS   Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
            and Moukhtar,M.S.
  TITLE     Isolation and partial characterization of the calcitonin gene in a
            lower vertebrate. Predicted structure of avian calcitonin
            gene-related peptide
  JOURNAL   FEBS Lett. 203 (1), 7-10 (1986)
   PUBMED   3487468
REFERENCE   9  (bases 1 to 1033)
  AUTHORS   Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
            Moukhtar,M.S.
  TITLE     Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
            direct evidence for the expression of a lower vertebrate
            calcitonin-like gene in man and rat
  JOURNAL   EMBO J. 4 (10), 2603-2607 (1985)
   PUBMED   4054101
REFERENCE   10 (bases 1 to 1033)
  AUTHORS   Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
  TITLE     Structure of chicken calcitonin predicted by partial nucleotide
            sequence of its precursor
  JOURNAL   FEBS Lett. 180 (1), 113-116 (1985)
   PUBMED   3838160
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000235.1, BU262345.1 and AI980061.1.
            
            Transcript Variant: This variant (4) differs in the 5' UTR and
            includes an alternate 3' coding region and 3' UTR, compared to
            variant 1. The encoded isoform (3) is shorter and has a distinct
            C-terminus, compared to isoform 1. This isoform is cleaved to yield
            calcitonin gene-related peptide (CGRP).
            
            Sequence Note: This RefSeq record was created from transcripts and
            genomic sequence data because no single transcript from the same
            breed was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU262345.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201366, SAMEA2201368
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               AADN04000235.1     2647646-2647762
            118-626             BU262345.1         115-623
            627-635             AADN04000235.1     2659325-2659333
            636-1003            AI980061.1         1-368
            1004-1033           AADN04000235.1     2659702-2659731
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Red Jungle Fowl"
     gene            1..1033
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="calcitonin related polypeptide alpha"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
     misc_feature    60..62
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="upstream in-frame stop codon"
     CDS             144..521
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="isoform 3 preproprotein is encoded by transcript
                     variant 4; calcitonin gene-related peptide;
                     calcitonin/calcitonin-related polypeptide, alpha"
                     /codon_start=1
                     /product="calcitonin gene-related peptide isoform 3
                     preproprotein"
                     /protein_id="NP_001258895.1"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
                     /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
                     EARRLLNALVKEFIQMTAEELEQASEGNSVTAQKRACNTATCVTHRLADFLSRSGGVG
                     KNNFVPTNVGSKAFGRRRRSVQI"
     sig_peptide     144..218
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     381..491
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /product="Calcitonin gene-related peptide"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P10286.2)"
     misc_feature    489..491
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phenylalanine amide. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P10286.2); amidation site"
ORIGIN      
        1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
       61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
      121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
      181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
      241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
      301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
      361 gcgtaacagc acagaaaagg gcatgcaaca cagctacctg cgtgacccat cgtctggcag
      421 acttcctgag caggtcagga ggagtgggca agaacaactt tgtcccaacc aacgtgggct
      481 ctaaggcttt cggcaggcga agaagaagcg ttcaaatata agaagctgaa tgacaacatg
      541 cctacggttg atgtgcaatt gaagactcaa cttcaatttc taatgaatgg aactcttctc
      601 cacaaatcaa gacagccaaa aagaagatta attttgcatc ctaatattga aagcattttg
      661 tttaagatga aaatgagaac acttctgtta tgtatagtac aagggactca agttattcaa
      721 gttaaattat tgtatattct ttttatatgc aactccattt caaataaaat gtgacagcat
      781 ctattattta tttatcttct agcatatatg tgatccatgc tatttatcct ggcactgctg
      841 ccaaaactcg gggagttata ctgaactgct gcctagcgag gcgtgtgtgt ataacatggt
      901 gtgctgtgcc ttggtgttaa acacttaact aacctgattg tacagtatgt ttaaaagcaa
      961 aacaaaagcc aacctcttaa ctattgtatc atttgtgaat ttaagcaaaa ttaaaaaaaa
     1021 gtatttttag ata
//

LOCUS       NM_001271965            1036 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus calcitonin related polypeptide alpha (CALCA),
            transcript variant 3, mRNA.
ACCESSION   NM_001271965
VERSION     NM_001271965.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
  TITLE     Calcitonin directly increases adrenocorticotropic
            hormone-stimulated corticosterone production in the hen adrenal
            gland
  JOURNAL   Poult. Sci. 88 (10), 2199-2205 (2009)
   PUBMED   19762876
  REMARK    GeneRIF: Calcitonin acts directly on adrenocortical cells via its
            receptor binding and increases responsiveness of ACTH on
            corticosterone production in the laying hen.
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
            and Ramachandran R.
  TITLE     Identification of calcitonin expression in the chicken ovary:
            influence of follicular maturation and ovarian steroids
  JOURNAL   Biol. Reprod. 77 (4), 626-635 (2007)
   PUBMED   17582014
  REMARK    GeneRIF: Ovarian CALCA is possibly involved in regulating
            follicular maturation in the chicken ovary.
REFERENCE   3  (bases 1 to 1036)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   4  (bases 1 to 1036)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   5  (bases 1 to 1036)
  AUTHORS   Tirunagaru VG, Sofer L, Cui J and Burnside J.
  TITLE     An expressed sequence tag database of T-cell-enriched activated
            chicken splenocytes: sequence analysis of 5251 clones
  JOURNAL   Genomics 66 (2), 144-151 (2000)
   PUBMED   10860659
REFERENCE   6  (bases 1 to 1036)
  AUTHORS   Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
            Jullienne A, Moukhtar MS and Lasmoles F.
  TITLE     Sequence and expression of the chicken calcitonin gene
  JOURNAL   FEBS Lett. 223 (1), 63-68 (1987)
   PUBMED   3666142
REFERENCE   7  (bases 1 to 1036)
  AUTHORS   Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
            Matsuo,H.
  TITLE     Isolation and determination of the amino acid sequence of chicken
            calcitonin I from chicken ultimobranchial glands
  JOURNAL   J. Biochem. 100 (2), 459-467 (1986)
   PUBMED   3782060
REFERENCE   8  (bases 1 to 1036)
  AUTHORS   Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
            and Moukhtar,M.S.
  TITLE     Isolation and partial characterization of the calcitonin gene in a
            lower vertebrate. Predicted structure of avian calcitonin
            gene-related peptide
  JOURNAL   FEBS Lett. 203 (1), 7-10 (1986)
   PUBMED   3487468
REFERENCE   9  (bases 1 to 1036)
  AUTHORS   Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
            Moukhtar,M.S.
  TITLE     Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
            direct evidence for the expression of a lower vertebrate
            calcitonin-like gene in man and rat
  JOURNAL   EMBO J. 4 (10), 2603-2607 (1985)
   PUBMED   4054101
REFERENCE   10 (bases 1 to 1036)
  AUTHORS   Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
  TITLE     Structure of chicken calcitonin predicted by partial nucleotide
            sequence of its precursor
  JOURNAL   FEBS Lett. 180 (1), 113-116 (1985)
   PUBMED   3838160
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU262345.1, BU203257.1, AADN04000235.1 and AI980061.1.
            
            Transcript Variant: This variant (3) differs in the 5' UTR and
            includes an alternate 3' coding region and 3' UTR, compared to
            variant 1. The encoded isoform (2) is shorter and has a distinct
            C-terminus, compared to isoform 1. This isoform is cleaved to yield
            calcitonin gene-related peptide (CGRP).
            
            Sequence Note: This RefSeq record was created from transcripts and
            genomic sequence data because no single transcript from the same
            breed was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU213401.1, BU203257.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201366, SAMEA2201375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1                 BU262345.1         1-1
            2-65                BU203257.1         3-66
            66-70               AADN04000235.1     2647711-2647715
            71-211              BU203257.1         73-213
            212-213             AADN04000235.1     2655456-2655457
            214-728             BU203257.1         217-731
            729-1006            AI980061.1         91-368
            1007-1036           AADN04000235.1     2659702-2659731
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Leghorn"
     gene            1..1036
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="calcitonin related polypeptide alpha"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
     misc_feature    60..62
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="upstream in-frame stop codon"
     CDS             144..524
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="isoform 2 preproprotein is encoded by transcript
                     variant 3; calcitonin gene-related peptide;
                     calcitonin/calcitonin-related polypeptide, alpha"
                     /codon_start=1
                     /product="calcitonin gene-related peptide isoform 2
                     preproprotein"
                     /protein_id="NP_001258894.1"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
                     /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
                     EARRLLNALVKEFIQMTAEELEQASEGNSSVTAQKRACNTATCVTHRLADFLSRSGGV
                     GKNNFVPTNVGSKAFGRRRRSVQI"
     sig_peptide     144..218
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     384..494
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /product="Calcitonin gene-related peptide"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P10286.2)"
     misc_feature    492..494
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phenylalanine amide. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P10286.2); amidation site"
ORIGIN      
        1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
       61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
      121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
      181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
      241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
      301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
      361 gcagcgtaac agcacagaaa agggcatgca acacagctac ctgcgtgacc catcgtctgg
      421 cagacttcct gagcaggtca ggaggagtgg gcaagaacaa ctttgtccca accaacgtgg
      481 gctctaaggc tttcggcagg cgaagaagaa gcgttcaaat ataagaagct gaatgacaac
      541 atgcctacgg ttgatgtgca attgaagact caacttcaat ttctaatgaa tggaactctt
      601 ctccacaaat caagacagcc aaaaagaaga ttaattttgc atcctaatat tgaaagcatt
      661 ttgtttaaga tgaaaatgag aacacttctg ttatgtatag tacaagggac tcaagttatt
      721 caagttaaat tattgtatat tctttttata tgcaactcca tttcaaataa aatgtgacag
      781 catctattat ttatttatct tctagcatat atgtgatcca tgctatttat cctggcactg
      841 ctgccaaaac tcggggagtt atactgaact gctgcctagc gaggcgtgtg tgtataacat
      901 ggtgtgctgt gccttggtgt taaacactta actaacctga ttgtacagta tgtttaaaag
      961 caaaacaaaa gccaacctct taactattgt atcatttgtg aatttaagca aaattaaaaa
     1021 aaagtatttt tagata
//

LOCUS       NM_001271964             912 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus calcitonin related polypeptide alpha (CALCA),
            transcript variant 2, mRNA.
ACCESSION   NM_001271964
VERSION     NM_001271964.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
  TITLE     Calcitonin directly increases adrenocorticotropic
            hormone-stimulated corticosterone production in the hen adrenal
            gland
  JOURNAL   Poult. Sci. 88 (10), 2199-2205 (2009)
   PUBMED   19762876
  REMARK    GeneRIF: Calcitonin acts directly on adrenocortical cells via its
            receptor binding and increases responsiveness of ACTH on
            corticosterone production in the laying hen.
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
            and Ramachandran R.
  TITLE     Identification of calcitonin expression in the chicken ovary:
            influence of follicular maturation and ovarian steroids
  JOURNAL   Biol. Reprod. 77 (4), 626-635 (2007)
   PUBMED   17582014
  REMARK    GeneRIF: Ovarian CALCA is possibly involved in regulating
            follicular maturation in the chicken ovary.
REFERENCE   3  (bases 1 to 912)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   4  (bases 1 to 912)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   5  (bases 1 to 912)
  AUTHORS   Tirunagaru VG, Sofer L, Cui J and Burnside J.
  TITLE     An expressed sequence tag database of T-cell-enriched activated
            chicken splenocytes: sequence analysis of 5251 clones
  JOURNAL   Genomics 66 (2), 144-151 (2000)
   PUBMED   10860659
REFERENCE   6  (bases 1 to 912)
  AUTHORS   Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
            Jullienne A, Moukhtar MS and Lasmoles F.
  TITLE     Sequence and expression of the chicken calcitonin gene
  JOURNAL   FEBS Lett. 223 (1), 63-68 (1987)
   PUBMED   3666142
REFERENCE   7  (bases 1 to 912)
  AUTHORS   Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
            Matsuo,H.
  TITLE     Isolation and determination of the amino acid sequence of chicken
            calcitonin I from chicken ultimobranchial glands
  JOURNAL   J. Biochem. 100 (2), 459-467 (1986)
   PUBMED   3782060
REFERENCE   8  (bases 1 to 912)
  AUTHORS   Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
            and Moukhtar,M.S.
  TITLE     Isolation and partial characterization of the calcitonin gene in a
            lower vertebrate. Predicted structure of avian calcitonin
            gene-related peptide
  JOURNAL   FEBS Lett. 203 (1), 7-10 (1986)
   PUBMED   3487468
REFERENCE   9  (bases 1 to 912)
  AUTHORS   Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
            Moukhtar,M.S.
  TITLE     Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
            direct evidence for the expression of a lower vertebrate
            calcitonin-like gene in man and rat
  JOURNAL   EMBO J. 4 (10), 2603-2607 (1985)
   PUBMED   4054101
REFERENCE   10 (bases 1 to 912)
  AUTHORS   Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
  TITLE     Structure of chicken calcitonin predicted by partial nucleotide
            sequence of its precursor
  JOURNAL   FEBS Lett. 180 (1), 113-116 (1985)
   PUBMED   3838160
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU262345.1, BU213401.1, BU335410.1, EU367492.1 and AADN04000235.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR,
            compared to variant 1. Variants 1 and 2 encode the same isoform
            (1), which is cleaved to yield calcitonin.
            
            Sequence Note: This RefSeq record was created from transcripts and
            genomic sequence data because no single transcript from the same
            breed was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU335410.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201361, SAMEA2201362
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1                 BU262345.1         1-1
            2-103               BU213401.1         1-102
            104-186             BU335410.1         1-83
            187-560             EU367492.1         44-417
            561-912             AADN04000235.1     2656930-2657281
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Leghorn"
     gene            1..912
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="calcitonin related polypeptide alpha"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
     misc_feature    60..62
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="upstream in-frame stop codon"
     CDS             144..560
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="isoform 1 preproprotein is encoded by transcript
                     variant 2; calcitonin gene-related peptide;
                     calcitonin/calcitonin-related polypeptide, alpha"
                     /codon_start=1
                     /product="calcitonin isoform 1 preproprotein"
                     /protein_id="NP_001258893.1"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
                     /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
                     EARRLLNALVKEFIQMTAEELEQASEGNSLDRPISKRCASLSTCVLGKLSQELHKLQT
                     YPRTDVGAGTPGKKRNVLNDLDHERYANYGETLGNN"
     sig_peptide     144..218
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    480..482
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Proline amide. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P07660.2); amidation site"
ORIGIN      
        1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
       61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
      121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
      181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
      241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
      301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
      361 gcctggatag acctatttcc aaacgctgtg ccagtctgag tacttgtgtg ctgggcaaac
      421 tgtctcaaga attgcacaaa ttgcaaactt accctcgtac tgacgtcggg gctggaactc
      481 ctggcaagaa aagaaatgtg ctgaatgacc tggaccatga acgctatgca aactatgggg
      541 aaaccctagg aaacaactag acgtgcttaa ttccgccctt ctccccccct cttttttttt
      601 ttttttcctt aacctgatgc atgtcgatct aactttgatt gctaactctg ctatgttctt
      661 ttgattctgt ttttgacaga gaatgtttga ggtggaccta atgttaggaa gacagaacat
      721 aacacacaca tcaagctagg ggaaaaataa atacaaatag acagcgctgc ctcgatttca
      781 aataatctta gatattgatt tttaaaaaca aatctagacg aggctcttca tttctggcta
      841 ctaaatgtac acgtagactc tttttgtgcc tgcccatgca cttgttcaat aaacctattt
      901 ttctataagg at
//

LOCUS       NM_001113708             843 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus calcitonin related polypeptide alpha (CALCA),
            transcript variant 1, mRNA.
ACCESSION   NM_001113708 XM_420997
VERSION     NM_001113708.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
  TITLE     Calcitonin directly increases adrenocorticotropic
            hormone-stimulated corticosterone production in the hen adrenal
            gland
  JOURNAL   Poult. Sci. 88 (10), 2199-2205 (2009)
   PUBMED   19762876
  REMARK    GeneRIF: Calcitonin acts directly on adrenocortical cells via its
            receptor binding and increases responsiveness of ACTH on
            corticosterone production in the laying hen.
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
            and Ramachandran R.
  TITLE     Identification of calcitonin expression in the chicken ovary:
            influence of follicular maturation and ovarian steroids
  JOURNAL   Biol. Reprod. 77 (4), 626-635 (2007)
   PUBMED   17582014
  REMARK    GeneRIF: Ovarian CALCA is possibly involved in regulating
            follicular maturation in the chicken ovary.
REFERENCE   3  (bases 1 to 843)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   4  (bases 1 to 843)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   5  (bases 1 to 843)
  AUTHORS   Tirunagaru VG, Sofer L, Cui J and Burnside J.
  TITLE     An expressed sequence tag database of T-cell-enriched activated
            chicken splenocytes: sequence analysis of 5251 clones
  JOURNAL   Genomics 66 (2), 144-151 (2000)
   PUBMED   10860659
REFERENCE   6  (bases 1 to 843)
  AUTHORS   Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
            Jullienne A, Moukhtar MS and Lasmoles F.
  TITLE     Sequence and expression of the chicken calcitonin gene
  JOURNAL   FEBS Lett. 223 (1), 63-68 (1987)
   PUBMED   3666142
REFERENCE   7  (bases 1 to 843)
  AUTHORS   Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
            Matsuo,H.
  TITLE     Isolation and determination of the amino acid sequence of chicken
            calcitonin I from chicken ultimobranchial glands
  JOURNAL   J. Biochem. 100 (2), 459-467 (1986)
   PUBMED   3782060
REFERENCE   8  (bases 1 to 843)
  AUTHORS   Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
            and Moukhtar,M.S.
  TITLE     Isolation and partial characterization of the calcitonin gene in a
            lower vertebrate. Predicted structure of avian calcitonin
            gene-related peptide
  JOURNAL   FEBS Lett. 203 (1), 7-10 (1986)
   PUBMED   3487468
REFERENCE   9  (bases 1 to 843)
  AUTHORS   Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
            Moukhtar,M.S.
  TITLE     Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
            direct evidence for the expression of a lower vertebrate
            calcitonin-like gene in man and rat
  JOURNAL   EMBO J. 4 (10), 2603-2607 (1985)
   PUBMED   4054101
REFERENCE   10 (bases 1 to 843)
  AUTHORS   Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
  TITLE     Structure of chicken calcitonin predicted by partial nucleotide
            sequence of its precursor
  JOURNAL   FEBS Lett. 180 (1), 113-116 (1985)
   PUBMED   3838160
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000235.1 and BM490287.1.
            On Dec 20, 2012 this sequence version replaced gi:118091210.
            
            Transcript Variant: This variant (1) represents the shortest
            transcript and encodes the longest isoform (1). Variants 1 and 2
            encode the same isoform (1), which is cleaved to yield calcitonin.
            
            Sequence Note: This RefSeq record was created from transcripts and
            genomic sequence data because no single transcript from the same
            breed was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CV890417.1, CV037669.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201361
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AADN04000235.1     2654365-2654373
            10-467              BM490287.1         1-458
            468-843             AADN04000235.1     2656906-2657281
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
                     /breed="Red Jungle Fowl"
     gene            1..843
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="calcitonin related polypeptide alpha"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
     misc_feature    48..50
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="upstream in-frame stop codon"
     CDS             75..491
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /note="isoform 1 preproprotein is encoded by transcript
                     variant 1; calcitonin gene-related peptide;
                     calcitonin/calcitonin-related polypeptide, alpha"
                     /codon_start=1
                     /product="calcitonin isoform 1 preproprotein"
                     /protein_id="NP_001107180.1"
                     /db_xref="CGNC:49721"
                     /db_xref="GeneID:396256"
                     /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
                     EARRLLNALVKEFIQMTAEELEQASEGNSLDRPISKRCASLSTCVLGKLSQELHKLQT
                     YPRTDVGAGTPGKKRNVLNDLDHERYANYGETLGNN"
     sig_peptide     75..149
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    411..413
                     /gene="CALCA"
                     /gene_synonym="CALC; CGRP"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Proline amide. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P07660.2); amidation site"
ORIGIN      
        1 gcggctcggc ggcagcattc ggcctccgct ccgtgcggca ccgcagctga gacccgcacc
       61 gccgagagga aatcatggtc atgctgaaga tttcatcttt ccttgctgtt tatgccttgg
      121 ttgtgtgcca gatggacagc ttccaggcag ccccagtcag acctggcttg gagtccatca
      181 cagatcgagt gacgctcagt gattacgaag ctcggagatt attaaatgcg ctggtgaaag
      241 agttcataca gatgacggca gaagagctgg agcaagcctc tgaggggaac agcctggata
      301 gacctatttc caaacgctgt gccagtctga gtacttgtgt gctgggcaaa ctgtctcaag
      361 aattgcacaa attgcaaact taccctcgta ctgacgtcgg ggctggaact cctggcaaga
      421 aaagaaatgt gctgaatgac ctggaccatg aacgctatgc aaactatggg gaaaccctag
      481 gaaacaacta gacgtgctta attccgccct tctccccccc tctttttttt tttttttcct
      541 taacctgatg catgtcgatc taactttgat tgctaactct gctatgttct tttgattctg
      601 tttttgacag agaatgtttg aggtggacct aatgttagga agacagaaca taacacacac
      661 atcaagctag gggaaaaata aatacaaata gacagcgctg cctcgatttc aaataatctt
      721 agatattgat ttttaaaaac aaatctagac gaggctcttc atttctggct actaaatgta
      781 cacgtagact ctttttgtgc ctgcccatgc acttgttcaa taaacctatt tttctataag
      841 gat
//

LOCUS       NM_001271936            2756 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus iron-sulfur cluster assembly 1 (ISCA1), mRNA.
ACCESSION   NM_001271936 NM_001012946 XM_425036
VERSION     NM_001271936.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2756)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   2  (bases 1 to 2756)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU398918.1 and AJ720560.1.
            On Dec 18, 2012 this sequence version replaced gi:61098433.
            
            Sequence Note: This RefSeq record was created from transcripts of
            different breeds because no single transcript from the same breed
            was available for the full length of the gene. The extent of this
            transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720560.1, BU110305.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201368, SAMEA2201375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                BU398918.1         1-41
            42-2756             AJ720560.1         1-2715
FEATURES             Location/Qualifiers
     source          1..2756
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="Z"
                     /map="Z"
                     /breed="Leghorn"
     gene            1..2756
                     /gene="ISCA1"
                     /gene_synonym="HBLD2"
                     /note="iron-sulfur cluster assembly 1"
                     /db_xref="CGNC:9567"
                     /db_xref="GeneID:427463"
     CDS             95..484
                     /gene="ISCA1"
                     /gene_synonym="HBLD2"
                     /note="iron sulfur assembly protein IscA; HESB-like
                     domain-containing protein 2"
                     /codon_start=1
                     /product="iron-sulfur cluster assembly 1 homolog,
                     mitochondrial"
                     /protein_id="NP_001258865.1"
                     /db_xref="CGNC:9567"
                     /db_xref="GeneID:427463"
                     /translation="MASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKQLLKDQPE
                     HVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYV
                     EDKLSSEFVFNNPNIKGTCGCGESFNI"
     transit_peptide 95..130
                     /gene="ISCA1"
                     /gene_synonym="HBLD2"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Mitochondrion. {ECO:0000255}; propagated from
                     UniProtKB/Swiss-Prot (Q5ZJ74.1)"
     mat_peptide     131..481
                     /gene="ISCA1"
                     /gene_synonym="HBLD2"
                     /product="Iron-sulfur cluster assembly 1 homolog,
                     mitochondrial"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5ZJ74.1)"
ORIGIN      
        1 ggcggatggc ggaagcgcgt cgggaggggt ggtgtcgcgg cgtgacgtcg gtggtgccca
       61 tggcagaggg cagaggacgg ggtggagggg cgtgatggca tcgtcggtgg tgcgggccac
      121 ggtgcgcgcc gtcagcaaga ggaagatcca ggccacccgc gccgccctca ctctgacccc
      181 gtcagccgtc cagaagataa aacaacttct taaagaccag cctgagcatg taggtgtgaa
      241 agtaggtgtt cgtacaaggg gatgcaatgg actttcttat acattagaat atacaaagtc
      301 taaaggagac tctgatgaag aagtagttca agatggggtt agagtgttta ttgagaagaa
      361 agcgcagctg acactcctag gaactgaaat ggactatgta gaagataaat tgtccagtga
      421 atttgtcttc aataatccaa acattaaagg aacatgtggc tgtggagaaa gctttaacat
      481 ttgaaatctc aggactactt ctttgacttt aaacatcaca agacacttgc tagttggctt
      541 tcagaagcag atcaattttc ttcagtttct agggtgtgta aagtctggac accactaagg
      601 aaaataaagt taagtcatgt tgaatatgta aattgtgtgt taaattgcag cactgatgca
      661 gttatgctgt aacttgtgat gagttggaat ccgaaaggta agaacagtaa gtgctatcat
      721 aatgtcactg tacttttaca tgccaaggaa ataaaactct aatattcttt tcctttgcaa
      781 ttttctttgt ccactccact cattccccat ccagaactga tgcaatctgc aaaagtatat
      841 tgccagtata ttctgagttg atttaaagga gggaaaaaag aaaaatcacc gtttatagat
      901 gttttatata cacagacata tggtcttcag tttcaaagtt cactgattat gtaaatgctt
      961 actttccttt cttagatttc tgatactttc atgtttttat gcgtaggttt tctggtagcc
     1021 tactttcctc caaatccaga gaagtccaaa aagaagtttg tatattagtg tagtggtagg
     1081 ctgttgcagc actgcttgta gaaatactca aaaatgtact cactgaattt taatcccgtt
     1141 ccttgccttg ttgaaggcac agcctatgtt gtacttagtg attttcaaaa acataaaata
     1201 tattgaggta ctggagtgct aaggcaggat acagcccttg ttcctcacat ttctgttgtt
     1261 tctttcgtga cttaaatggc agaggtgtta aaaattatcc agattttgat tctgtattca
     1321 cagaatgtgt ctgtattctc attatgctat ctgtctacca aagccataag ccgctttttc
     1381 tgggagagaa atcttaactt ttttttaacc gtgcgtgcta ctcgttctgt tagaactcta
     1441 aactctgctt agtaactgtg tagcactagg atttttcatt tcaaaagctt acagtaacct
     1501 ctatgtaacg gctaaccaaa ggttaattta gtaacaggaa accactcatc atttaaaaaa
     1561 aaaaaaaaaa gcttttattg agtaattatt ttaaaaataa ttctgtcagt aattaaaaaa
     1621 atatatatca gattactcct aattagatta ttccctttct gaagcattgt ttttcaagct
     1681 gatggtcttc cactggaaat caggcagaag tgtaaacatt tctccaggcc ttccaagagc
     1741 tgataggaga aaagtacagt tccatccttt tatctttaat ttccctgatt gtctaaagag
     1801 ggcactgtgc agctaagcta cttccttttg tagacaagat agtatcttgt taatctggga
     1861 aactaacctg aacacttagt cagaagagtg gagttagaaa gtagaggatt ctggggactg
     1921 ggctcttagc atcatgtatg cttgcctgta acaacttggc agtagtgaca tactaaagat
     1981 gtagacttgc agccagttag atctggcttg agaaaatatg tagagacaag aataaaaatg
     2041 aaaaacttac atcgttcttg atatgtactg cataggaatt gaaggccaga atttccagag
     2101 ctatagttta atattagatg cttgaatttc agttgtatac tatgtcacct tttggtataa
     2161 aaacactttt tcctttagta gtcaactgtt atacacagtt actttatttt atacagtaat
     2221 ccaggagtaa ctggtgtaac actggttagg tgaatttata gtgccgtaaa cgctttcgtc
     2281 ttgccaaaca aaaatccggt taatgtgata gtatgtctaa aacttcaagc taagggcatt
     2341 tcttcagatt ggtgtttctg tgctccttgc tagcagataa gaccatgaat gtggtagcac
     2401 tggtgtttgc taagagtgct ttgactttac tcatttcact tgtttcagtg tgcatctggt
     2461 tttggggatg tttttggacc tgtgcacaca cattaatctt tttcgtgtgt tttgtgtata
     2521 tgccttgaat ggaagtttga attttcatac tctcatgaaa taatctttta aaatgtgtta
     2581 atttactgac ccataacgca cagtctgtta aagtaagctt ctgcttaagt gctatttact
     2641 gttctatagg cacatggttt tgtcagttga tacaattttg tgcaatactg tatgtagagt
     2701 tctgagttat tataataaat attgcctgtt ggtaaatgtg aaaaaaaaaa aaaaaa
//

LOCUS       NM_001271894            5056 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus podocalyxin like (PODXL), mRNA.
ACCESSION   NM_001271894 XM_003640324 XM_416475
VERSION     NM_001271894.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 5056)
  AUTHORS   Nielsen JS, Graves ML, Chelliah S, Vogl AW, Roskelley CD and
            McNagny KM.
  TITLE     The CD34-related molecule podocalyxin is a potent inducer of
            microvillus formation
  JOURNAL   PLoS ONE 2 (2), E237 (2007)
   PUBMED   17311105
  REMARK    GeneRIF: Recombinant chicken podocalyxin recruits NHERF-1 to the
            apical domain of human MCF-7 cells and promotes microvillus
            formation. Podocalyxin.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5056)
  AUTHORS   McNagny KM, Pettersson I, Rossi F, Flamme I, Shevchenko A, Mann M
            and Graf T.
  TITLE     Thrombomucin, a novel cell surface protein that defines
            thrombocytes and multipotent hematopoietic progenitors
  JOURNAL   J. Cell Biol. 138 (6), 1395-1407 (1997)
   PUBMED   9298993
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000326.1 and Y13978.1.
            On or before Dec 12, 2012 this sequence version replaced
            gi:363727360, gi:363727362.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            breed was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: Y13978.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AADN04000326.1     968732-968735       c
            5-1466              Y13978.1           15-1476
            1467-1467           AADN04000326.1     934002-934002       c
            1468-1909           Y13978.1           1478-1919
            1910-5056           AADN04000326.1     928033-931179       c
FEATURES             Location/Qualifiers
     source          1..5056
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Red Jungle Fowl"
     gene            1..5056
                     /gene="PODXL"
                     /gene_synonym="MEP21; PC; PCLP-1"
                     /note="podocalyxin like"
                     /db_xref="CGNC:49459"
                     /db_xref="GeneID:395755"
     CDS             50..1765
                     /gene="PODXL"
                     /gene_synonym="MEP21; PC; PCLP-1"
                     /note="thrombomucin; podocalyxin-like protein 1"
                     /codon_start=1
                     /product="podocalyxin precursor"
                     /protein_id="NP_001258823.1"
                     /db_xref="CGNC:49459"
                     /db_xref="GeneID:395755"
                     /translation="MRAPLLLPLLPLLLFGVSSGNNDKTTHSTTVSPETTKQITTITV
                     TTSQVQGSISASKPSSTAPTAVMSFTKAQEAATSSKQHDSSTSSIPPPSTSITPSIIT
                     TSPQGKTPSTPALTHTPDQNTKTTGRQDDTSHVSVASTSASQQVSSSASAAVPTTTSA
                     VTSSATQQKVSPTDSSEILLKPSASPNSTQVTSPSRTPKGFLSTVTTSPHIADNGSTA
                     LNQLKSTVSSSEVPVSSFLDKDHSVSSSTSATNQHLSLSSHRPTSPVPKFECSTPHSG
                     SVPSTSSKTSLSSPSSSTKNATVTTTMTTAKAAYTSQGDGSVTHKSGVTAQSPTSAPL
                     PTPTLKDHMKSKSPDQTHSNVSPPNEVICEDQIGEVRPILNLKEEKTCDDWKKASNEA
                     FFEVFCSGRRHAFNSTRDRCTVKLASSNHRRWAVHVIVHRVLDPAAVFEELKEKRNEL
                     EKLGITNVTYLNQEMEEEIKDQFSTPLIITIVTLAGSLLLIAAIYGCCHQRFSQKKSQ
                     QRLTEELQTMENGYHDNPTLEVMETGSEMQEKKVNLNGELGDSWIVPLDTIMKEDLEE
                     EDTHL"
     sig_peptide     50..109
                     /gene="PODXL"
                     /gene_synonym="MEP21; PC; PCLP-1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 aacggggaga gcgccgggag ccggagcggg gacggccgca cagagcacca tgcgggcacc
       61 gctgctgctg ccgctgctcc cgctgctgct gttcggtgtc agctctggca ataatgataa
      121 aactacacat tcgaccacag tgagtccaga aacaactaag cagatcacca ctattacagt
      181 caccaccagc caggtgcaag ggagtatctc tgcaagcaaa ccaagcagca cagctcccac
      241 cgctgtgatg tccttcacca aagctcaaga ggcagccact tcaagcaaac aacatgactc
      301 ttcaacatca tccatcccac caccatcaac cagcatcacc cccagcatca tcactacaag
      361 cccacaggga aaaacaccat ccactcctgc attgacacac accccagatc aaaacaccaa
      421 gaccacaggc agacaagatg acacatcaca tgtctcagtg gcatcaacca gtgcatctca
      481 gcaggtcagc tcttcagcca gcgccgctgt cccaacaacc acctctgctg tcacctccag
      541 tgctacacag cagaaggtga gccctacaga cagctcagaa atcttactca aacccagtgc
      601 aagtcctaat tccactcaag taaccagccc ttcacgcacc ccaaaaggct tcctgtctac
      661 tgtcacaaca tctccacaca tagcagacaa tggaagcact gctttaaacc agttgaaaag
      721 tactgtgtca agttctgaag tcccagtgag cagctttttg gacaaggacc acagtgtctc
      781 ttcttctaca tctgccacca accagcatct ctcactttcc agtcatcgtc ccacttctcc
      841 agtcccgaaa tttgaatgtt ctacccctca tagtggatcc gtgccctcta ccagcagtaa
      901 aacatctctg tcttcgccat ctagcagcac aaagaatgcc acagtcacaa ccaccatgac
      961 aactgctaaa gcagcataca caagccaggg agatggatct gtgacacaca aatctggagt
     1021 tactgctcag agccccacca gtgcaccact gccaacaccg accctgaaag accacatgaa
     1081 gagcaagagt cctgaccaga cacactcgaa tgtttctccc ccaaatgagg tgatttgtga
     1141 agaccagata ggagaggtgc ggcccatcct aaatctgaaa gaagagaaaa cttgtgacga
     1201 ctggaagaaa gccagtaatg aggccttctt cgaggtcttc tgctcaggca ggcggcacgc
     1261 attcaacagc acgagagaca ggtgcacggt gaaactggcc tcctccaatc atcgtcgctg
     1321 ggctgtgcat gtcattgtgc atcgcgttct ggaccctgca gcagtctttg aagagctgaa
     1381 agaaaagagg aatgagttag agaagcttgg catcaccaac gtcacctacc tcaaccagga
     1441 gatggaggaa gagatcaagg atcagttcag cacacccctc ataatcacca ttgtcaccct
     1501 ggctggctcc ctgctgctca tcgcagcaat ctacggctgc tgtcaccaac gcttctccca
     1561 aaagaagagc cagcagcgcc tgacagagga gctacagaca atggagaatg gctaccatga
     1621 taaccccaca ctggaggtga tggaaacggg ctctgaaatg caggagaaga aggtgaacct
     1681 taacggggag ctgggggaca gctggatcgt tcctcttgac accatcatga aggaggacct
     1741 agaggaagag gatacgcatt tatagggtgc aggatttgag caagcaaaaa acaaccccct
     1801 gaaacaccta atccctttcc ctaaaaaaca gaaaacaaac ataaccctcc tgtacatgta
     1861 cacaattcca aaggaaggca gaattccaaa caaaccccag aaaacccctt gtgagctaat
     1921 cacagccacc acacagggtg aaggatggaa gagaaggaca caagaagaca cctccatggc
     1981 acatcaccaa catgacacag tggccacatc cagtccagca gctctgtcac ccatgggtgc
     2041 tcctggggac ctgtccagca gattggccaa tcctagcagg gatggctttg ctgctctgct
     2101 ctctccaaac agggatgctt gaggctttct agcagcaggg atgctgtatc ccctcccgtt
     2161 ccccaagtgc atcctccagc ttccaagtga ttcgaaaagt aaaaagaaat gtagtgagga
     2221 tgggagaggg agcacagctt gtgatagcca gctggcactt agaagataga gctagaaaaa
     2281 tcctctggcc catgctgttt aatcatcgtc ctcccctaca gctcccttgg aaaacaccca
     2341 gggactgagc acaaagagct ggaatgctcc atttgctcct ttcttatcca ctttccatcc
     2401 tcacccaact gctctttaaa aatgcacact ggccacactt tatggcataa gcaaatgcat
     2461 gcatccaggc atggctggac tgggggtgtt gaggccaaat cccacactgc ctttgtcagc
     2521 cccacaaagg gctggggcag gttctggtta cagaccagaa gagatgaagg ggatagtgca
     2581 gcaccttcca gtgagaggga gaggaaaagg tgtcactcct tgattttgta tctctaaggg
     2641 agtgtttaat gagacaaaga ccaaccgaat gctgtaggtg gttttggttg taaaggagcc
     2701 cagctgtaac acagaccagt tctatggttg catttagcta cggaagcatc cgatcacctc
     2761 ccagtagtga tgcagcacac ccattttctc ctgaggctgg tgctgatgcg tgcagcgatg
     2821 ctttgttctg gcagcgaatt ctgtgctcat gttgtcttgt gctaactaca gaaacaatac
     2881 aagagcagca gaggtgtgag ccaggtaact tggctgcagt cagagttttc catccgttca
     2941 gctcttggtg tttcctctcc atgaggttgg tgatctccat cctcatcctc aaggttttcc
     3001 tcttcagaag tacttaaaat agcagacatc tgtgaagaag cctccagcaa ggcttgtact
     3061 gaacctcggt ttcctgtcaa ggtctccctt tgcgataaat cttcaaaggg aaaaaaaaaa
     3121 aaaaaggagc agaaaatggc tggactaagg ccatttgtgg atttcccatt cctgccacag
     3181 ttcctcagtg gctctagaag gagagcttca cagcaggcag tctggtgtgg aagggacctg
     3241 aagtcccttg ggtgagggca tctcctgtca tctcatgcat catcacagca cgccgaggtt
     3301 ggaacgaacc tctgggttca tctggtctaa tccctgcacc agcagggaca cccagagctc
     3361 tgcccaggac cacgtccagg tgggtttgaa gatctccaag ggagaaatgc tcacattgag
     3421 gtgctgtgca gcaaatccac agcagtcctg gtgaggcaga ggagctccag gtcaatgcaa
     3481 tggagaagcc attcctaagg ctgtcccaga agatgggcaa agataaagag gtgaggagaa
     3541 atgaaaacaa tggcaaaact ctgctctagc tcatcagagt tgctcacaaa tagagtggtc
     3601 agagcagctt gctcagctcc aggacagaag ctggcagaag atgcatcttc tcccatgggc
     3661 cagctatttt ccttctctcc cgcactgaag gacatagttg aaagcgttca agcctatcta
     3721 tttttgtatg taaatattac tgctattcat tagcaatgta ttccgcacac ttcacttatc
     3781 tgtgcactgc agtacgggga agcaattttg gagggggaaa attaaaaaac aaaaaaaaaa
     3841 tactaaaaaa gctaaaggcc tgtctggtag gggattgcaa ctcaacagat agcaggagaa
     3901 catctgatga agctgctcgg ataaccccat gctgctgcac gtcagcatcg tgttaacatt
     3961 ggcaaattgg tcttggggtg ggcagcagca cgttcagctc ttaatgtcca aaccagcctt
     4021 aaggaactgc tctggttgtt tgtaatgctt ttggaagcat gttgcttccc agctgcccag
     4081 gatgggtctt tggactcata tttctgtcct tagcataaaa taaaagcagt acgtgcctaa
     4141 ggtccccttc cagtgaagag atgccaaagt gctttaatga atcaggtcca aagactttcc
     4201 cagagaaccc tatgaaggct tgaaatcaag caaccttaaa tctttcagag cagagaccgg
     4261 tggagatagt aactgctcgg caagtgctta cagtgattta tatttgaata ggaattgtac
     4321 atttatttat ttttccagac accatatttt taaaccacta atattttata gtagattttc
     4381 cttcccctat ttaaagaact atttccttgg gaaaaaaaaa ataataaagt ttttatgttg
     4441 gtaacattct ttttgcaaaa aaataaaaca tcaggtagga aatgcagcat cttcagcctt
     4501 aacaattccc ttcatagact gtagccacaa ctgttagacc aaaaagatct acccatgcat
     4561 ttcctccctg cccctctctc cttccccttg ctcctcttct cttccccaaa atagctttaa
     4621 cacccaatat gctgtacaag gactattacc ttttggtaag acttttgtaa gcagttcaga
     4681 tgttcttgca agagactttt ctatttgcag attcacaagg agcatgtaaa tactttagga
     4741 ccatttatct cccactcaca gtgccatgac ccaaccgagc aggttgatgc tgcgtcttgc
     4801 ctacagccga agatgtaacc cacaatgggc tgcagaagga gaacctattt cccgaggcag
     4861 ctatccattg aaccttgcaa atattgtaga gctctcatgt actgtatagc agcatctctc
     4921 gtggggacag gagtctgatt tacactggaa tttaatgagg aactggattg tagagattat
     4981 tcttgcattt tcctacaaat atattttgaa agcatcatgt atttctgtca ataaacattc
     5041 gtatgtaaga gattca
//

LOCUS       NM_205450                772 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus troponin C2, fast skeletal type (TNNC2), mRNA.
ACCESSION   NM_205450
VERSION     NM_205450.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Knowles AC, Irving M and Sun YB.
  TITLE     Conformation of the troponin core complex in the thin filaments of
            skeletal muscle during relaxation and active contraction
  JOURNAL   J. Mol. Biol. 421 (1), 125-137 (2012)
   PUBMED   22579625
  REMARK    GeneRIF: A model of the orientation of the C-terminal lobe of
            troponin C (TnC) in skeletal muscle.
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Pearson DS, Swartz DR and Geeves MA.
  TITLE     Fast pressure jumps can perturb calcium and magnesium binding to
            troponin C F29W
  JOURNAL   Biochemistry 47 (46), 12146-12158 (2008)
   PUBMED   18942859
  REMARK    GeneRIF: Fast pressure jumps can perturb calcium and magnesium
            binding to troponin C F29W.(
REFERENCE   3  (bases 1 to 772)
  AUTHORS   Fidalgo da Silva E, Freire MM, Barrabin H, Sorenson MM, Tikunova S,
            Johnson JD, Chandra M, Pearlstone JR and Scofano HM.
  TITLE     Troponin C/calmodulin chimeras as erythrocyte plasma membrane
            Ca2+-ATPase activators
  JOURNAL   Int. J. Biochem. Cell Biol. 38 (2), 209-221 (2006)
   PUBMED   16213185
  REMARK    GeneRIF: Data show that a recombinant troponin C/calmodulin
            chimera, in which the carboxyl-terminal domain of TnC is replaced
            by that of CaM, has the same ability as CaM to bind and transmit
            the signal to calcium sites on the enzyme.
REFERENCE   4  (bases 1 to 772)
  AUTHORS   Murakami K, Yumoto F, Ohki SY, Yasunaga T, Tanokura M and
            Wakabayashi T.
  TITLE     Structural basis for Ca2+-regulated muscle relaxation at
            interaction sites of troponin with actin and tropomyosin
  JOURNAL   J. Mol. Biol. 352 (1), 178-201 (2005)
   PUBMED   16061251
  REMARK    GeneRIF: Results describe the solution structures of a 'mobile'
            actin-binding domain (approximately 6.1 kDa) in the troponin
            ternary complex.
REFERENCE   5  (bases 1 to 772)
  AUTHORS   Satyshur KA, Pyzalska D, Greaser M, Rao ST and Sundaralingam M.
  TITLE     Structure of chicken skeletal muscle troponin C at 1.78 A
            resolution
  JOURNAL   Acta Crystallogr. D Biol. Crystallogr. 50 (PT 1), 40-49 (1994)
   PUBMED   15299475
REFERENCE   6  (bases 1 to 772)
  AUTHORS   Shaw GS, Hodges RS and Sykes BD.
  TITLE     Determination of the solution structure of a synthetic two-site
            calcium-binding homodimeric protein domain by NMR spectroscopy
  JOURNAL   Biochemistry 31 (40), 9572-9580 (1992)
   PUBMED   1390738
REFERENCE   7  (bases 1 to 772)
  AUTHORS   Golosinska K, Pearlstone JR, Borgford T, Oikawa K, Kay CM,
            Carpenter MR and Smillie LB.
  TITLE     Determination of and corrections to sequences of turkey and chicken
            troponins-C. Effects of Thr-130 to Ile mutation on Ca2+ affinity
  JOURNAL   J. Biol. Chem. 266 (24), 15797-15809 (1991)
   PUBMED   1908459
REFERENCE   8  (bases 1 to 772)
  AUTHORS   Reinach FC and Karlsson R.
  TITLE     Cloning, expression, and site-directed mutagenesis of chicken
            skeletal muscle troponin C
  JOURNAL   J. Biol. Chem. 263 (5), 2371-2376 (1988)
   PUBMED   2963002
REFERENCE   9  (bases 1 to 772)
  AUTHORS   Satyshur KA, Rao ST, Pyzalska D, Drendel W, Greaser M and
            Sundaralingam M.
  TITLE     Refined structure of chicken skeletal muscle troponin C in the
            two-calcium state at 2-A resolution
  JOURNAL   J. Biol. Chem. 263 (4), 1628-1647 (1988)
   PUBMED   3338985
REFERENCE   10 (bases 1 to 772)
  AUTHORS   Wilkinson,J.M.
  TITLE     The amino acid sequence of troponin C from chicken skeletal muscle
  JOURNAL   FEBS Lett. 70 (1), 254-256 (1976)
   PUBMED   992069
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from M19027.1.
            On Aug 31, 2012 this sequence version replaced gi:45382066.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: M19027.1, BU217608.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201369, SAMEA2201373
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-772               M19027.1           5-776
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="20"
                     /map="20"
     gene            1..772
                     /gene="TNNC2"
                     /note="troponin C2, fast skeletal type"
                     /db_xref="CGNC:49802"
                     /db_xref="GeneID:396434"
     CDS             39..530
                     /gene="TNNC2"
                     /note="troponin C (TNC); troponin C type 2 (fast)"
                     /codon_start=1
                     /product="troponin C, skeletal muscle"
                     /protein_id="NP_990781.1"
                     /db_xref="CGNC:49802"
                     /db_xref="GeneID:396434"
                     /translation="MASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELG
                     TVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANC
                     FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMME
                     GVQ"
ORIGIN      
        1 aggaagaggt gactccctgc gggaggagag cagcaaagat ggcgtcaatg acggaccagc
       61 aggcggaggc ccgcgccttc ctcagcgagg agatgattgc tgagttcaaa gctgcctttg
      121 acatgtttga tgcggacggt ggtggggaca tcagcaccaa ggagttgggc acggtgatga
      181 ggatgctggg ccagaacccc accaaagagg agctggatgc catcatcgag gaggtggacg
      241 aggatggcag cggcaccatc gacttcgagg agttcctggt gatgatggtg cgccagatga
      301 aagaggacgc caagggcaag tctgaggagg agctggccaa ctgcttccgc atcttcgaca
      361 agaacgctga tgggttcatc gacatcgagg agctgggtga gattctcagg gccactgggg
      421 agcacgtcat cgaggaggac atagaagacc tcatgaagga ttcagacaag aacaatgacg
      481 gccgcattga cttcgatgag ttcctgaaga tgatggaggg tgtgcagtaa gggatcagac
      541 attcctgggg ccggatgcgg cagccagccc tgctcctctg cccaggagcg gctccgctgc
      601 agcacctggc cttgctgccc acccgctgga gccctgcagc agctcgtgcc cctcggccgg
      661 cggctgagct tttccttgac tctgacagat gtggtttatg gatgaacctc attaaaaggg
      721 gaaaggctga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//

LOCUS       NM_204650                384 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus avian beta-defensin 3 (AvBD3), mRNA.
ACCESSION   NM_204650
VERSION     NM_204650.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Cuperus T, Coorens M, van Dijk A and Haagsman HP.
  TITLE     Avian host defense peptides
  JOURNAL   Dev. Comp. Immunol. 41 (3), 352-369 (2013)
   PUBMED   23644014
  REMARK    Review article
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Sonoda Y, Abdel Mageed AM, Isobe N and Yoshimura Y.
  TITLE     Induction of avian beta-defensins by CpG oligodeoxynucleotides and
            proinflammatory cytokines in hen vaginal cells in vitro
  JOURNAL   Reproduction 145 (6), 621-631 (2013)
   PUBMED   23625580
  REMARK    GeneRIF: Data suggest that DEFB1 and DEFB3 are involved in
            mechanisms by which the vaginal mucosa forms a more efficient
            defense system against bacterial infection; proinflammatory
            cytokines induce DEFB1 and DEFB3 in vagina mucosa cells.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 384)
  AUTHORS   Zhang HH, Yang XM, Xie QM, Ma JY, Luo YN, Cao YC, Chen F and Bi YZ.
  TITLE     The potent adjuvant effects of chicken beta-defensin-1 when
            genetically fused with infectious bursal disease virus VP2 gene
  JOURNAL   Vet. Immunol. Immunopathol. 136 (1-2), 92-97 (2010)
   PUBMED   20334934
  REMARK    GeneRIF: potent adjuvant effects of beta-defensin-1 when
            genetically fused with infectious bursal disease virus VP2 gene
REFERENCE   4  (bases 1 to 384)
  AUTHORS   Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
            Lalmanach AC.
  TITLE     Differential modulation of beta-defensin gene expression by
            Salmonella Enteritidis in intestinal epithelial cells from
            resistant and susceptible chicken inbred lines
  JOURNAL   Dev. Comp. Immunol. 33 (9), 959-966 (2009)
   PUBMED   19539093
  REMARK    GeneRIF: intestinal epithelium express beta-defensin antimicrobial
            peptides that may play a role in immunoprotection against
            Salmonella Enteritidis.
REFERENCE   5  (bases 1 to 384)
  AUTHORS   Shimizu M, Watanabe Y, Isobe N and Yoshimura Y.
  TITLE     Expression of avian beta-defensin 3, an antimicrobial peptide, by
            sperm in the male reproductive organs and oviduct in chickens: an
            immunohistochemical study
  JOURNAL   Poult. Sci. 87 (12), 2653-2659 (2008)
   PUBMED   19038823
  REMARK    GeneRIF: AvBD-3 is synthesized by late stage of spermatids in the
            testis, and this molecule is retained by the sperm during the
            passage of male reproductive tract, and even in the sperm storage
            tubules of oviduct.
REFERENCE   6  (bases 1 to 384)
  AUTHORS   Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
            Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
            Lehrer,R.I.
  TITLE     Avian beta-defensin nomenclature: a community proposed update
  JOURNAL   Immunol. Lett. 110 (1), 86-89 (2007)
   PUBMED   17467809
REFERENCE   7  (bases 1 to 384)
  AUTHORS   Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
  TITLE     Effects of age, egg-laying activity, and Salmonella-inoculation on
            the expressions of gallinacin mRNA in the vagina of the hen oviduct
  JOURNAL   J. Reprod. Dev. 52 (2), 211-218 (2006)
   PUBMED   16394622
  REMARK    GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
            laying hens increases with age but decreases in the regressed
            oviduct during the non-laying phase, and may increase in response
            to Salmonella enteritidis (SE) and lipopolysaccharide
REFERENCE   8  (bases 1 to 384)
  AUTHORS   Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
            Zhang G.
  TITLE     A genome-wide screen identifies a single beta-defensin gene cluster
            in the chicken: implications for the origin and evolution of
            mammalian defensins
  JOURNAL   BMC Genomics 5 (1), 56 (2004)
   PUBMED   15310403
  REMARK    GeneRIF: The chicken genome encodes only beta-defensins. The 13
            chicken beta-defensin genes are clustered densely within a 86-Kb
            distance on the chromosome 3q3.5-q3.7. The deduced peptides share
            the characteristic defensin motif.
            Publication Status: Online-Only
REFERENCE   9  (bases 1 to 384)
  AUTHORS   Zhao C, Nguyen T, Liu L, Sacco RE, Brogden KA and Lehrer RI.
  TITLE     Gallinacin-3, an inducible epithelial beta-defensin in the chicken
  JOURNAL   Infect. Immun. 69 (4), 2684-2691 (2001)
   PUBMED   11254635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF181952.1.
            On Aug 31, 2012 this sequence version replaced gi:45382830.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF181952.1, DQ677634.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201364
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-384               AF181952.1         4-387
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..384
                     /gene="AvBD3"
                     /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
                     /note="avian beta-defensin 3"
                     /db_xref="CGNC:12490"
                     /db_xref="GeneID:395363"
     CDS             3..245
                     /gene="AvBD3"
                     /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
                     /note="beta-defensin prepropeptide; gallinacin-3;
                     antimicrobial peptide-3; defensin, beta 1; beta-defensin 3
                     antimicrobial peptide"
                     /codon_start=1
                     /product="gallinacin-3 precursor"
                     /protein_id="NP_989981.1"
                     /db_xref="CGNC:12490"
                     /db_xref="GeneID:395363"
                     /translation="MRIVYLLIPFFLLFLQGAAGTATQCRIRGGFCRVGSCRFPHIAI
                     GKCATFISCCGRAYEVDALNSVRTSPWLLAPGNNPH"
     sig_peptide     3..62
                     /gene="AvBD3"
                     /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     69..242
                     /gene="AvBD3"
                     /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
                     /product="Gallinacin-3"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9DG58.1)"
ORIGIN      
        1 ccatgcggat cgtgtacctg ctcatcccct tcttcctctt gtttctccag ggtgctgcag
       61 gaactgccac tcagtgcaga ataagaggag gattctgtcg tgttgggagc tgccgcttcc
      121 cacacatagc tattgggaaa tgtgcaacat ttatttcctg ctgtggaaga gcatatgagg
      181 ttgatgccct gaattctgtg aggacatcgc cgtggcttct cgctcctgga aacaaccccc
      241 attgacctct ccccttccca cctctgcagt ctcccatggt atgaccgtgg cagtggaagc
      301 tggagacacc tcgctgtggg cctgcagttg tttggccaga tgctgctttt ccctgctgaa
      361 taaaggcgtg cagtttggca ttgc
//

LOCUS       NM_205307               2182 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus Raf-1 proto-oncogene, serine/threonine kinase (RAF1),
            mRNA.
ACCESSION   NM_205307
VERSION     NM_205307.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2182)
  AUTHORS   Magarinos M, Aburto MR, Sanchez-Calderon H, Munoz-Agudo C, Rapp UR
            and Varela-Nieto I.
  TITLE     RAF kinase activity regulates neuroepithelial cell proliferation
            and neuronal progenitor cell differentiation during early inner ear
            development
  JOURNAL   PLoS ONE 5 (12), E14435 (2010)
   PUBMED   21203386
  REMARK    GeneRIF: RAF kinase activity is essential to establish the balance
            between cell proliferation and death in neuroepithelial otic
            precursors, and for otic neuron differentiation and axonal growth
            at the acoustic-vestibular ganglion
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2182)
  AUTHORS   Brummer T, Stehelin D, Misawa Y and Reth M.
  TITLE     A revised and complete map of the chicken c-mil/raf-1 locus
  JOURNAL   Oncogene 23 (17), 3128-3131 (2004)
   PUBMED   14968114
  REMARK    GeneRIF: a complete map of the c-mil/raf-1 gene and a revision of
            the exon numbers
REFERENCE   3  (bases 1 to 2182)
  AUTHORS   Brummer T, Shaw PE, Reth M and Misawa Y.
  TITLE     Inducible gene deletion reveals different roles for B-Raf and Raf-1
            in B-cell antigen receptor signalling
  JOURNAL   EMBO J. 21 (21), 5611-5622 (2002)
   PUBMED   12411479
  REMARK    GeneRIF: Inducible gene deletion of the c-mil/raf-1 gene in chicken
            DT40 B cells revealed that, in addition to B-Raf, Raf-1 acts as an
            accessory ERK activator following engagement of the B cell antigen
            receptor.
REFERENCE   4  (bases 1 to 2182)
  AUTHORS   Dozier C, Denhez F, Henry C, Coll J, Begue A, Quatannens B, Saule S
            and Stehelin D.
  TITLE     Alternative splicing of RNAs transcribed from the chicken c-mil
            gene
  JOURNAL   Mol. Cell. Biol. 8 (4), 1835-1838 (1988)
   PUBMED   2837658
REFERENCE   5  (bases 1 to 2182)
  AUTHORS   Koenen M, Sippel AE, Trachmann C and Bister K.
  TITLE     Primary structure of the chicken c-mil protein:identification of
            domains shared with or absent from the retroviral v-mil protein
  JOURNAL   Oncogene 2 (2), 179-185 (1988)
   PUBMED   3285296
REFERENCE   6  (bases 1 to 2182)
  AUTHORS   Jansen,H.W. and Bister,K.
  TITLE     Nucleotide sequence analysis of the chicken gene c-mil, the
            progenitor of the retroviral oncogene v-mil
  JOURNAL   Virology 143 (2), 359-367 (1985)
   PUBMED   2998016
REFERENCE   7  (bases 1 to 2182)
  AUTHORS   Flordellis,C.S., Kan,N.C., Lautenberger,J.A., Samuel,K.P.,
            Garon,C.F. and Papas,T.S.
  TITLE     Analysis of the cellular proto-oncogene mht/raf: relationship to
            the 5' sequences of v-mht in avian carcinoma virus MH2 and v-raf in
            murine sarcoma virus 3611
  JOURNAL   Virology 141 (2), 267-274 (1985)
   PUBMED   3002017
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from X07017.1.
            On Aug 30, 2012 this sequence version replaced gi:45384313.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X07017.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2182              X07017.1           3-2184
FEATURES             Location/Qualifiers
     source          1..2182
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="12"
                     /map="12"
     gene            1..2182
                     /gene="RAF1"
                     /note="Raf-1 proto-oncogene, serine/threonine kinase"
                     /db_xref="CGNC:3714"
                     /db_xref="GeneID:396245"
     misc_feature    41..43
                     /gene="RAF1"
                     /note="upstream in-frame stop codon"
     CDS             71..2014
                     /gene="RAF1"
                     /EC_number="2.7.11.1"
                     /note="c-mil protein; C-RAF; MIL proto-oncogene
                     serine/threonine-protein kinase; v-raf-1 murine leukemia
                     viral oncogene homolog 1"
                     /codon_start=1
                     /product="RAF proto-oncogene serine/threonine-protein
                     kinase"
                     /protein_id="NP_990638.1"
                     /db_xref="CGNC:3714"
                     /db_xref="GeneID:396245"
                     /translation="MEHIQGAWKTISNGFGLKDSVFDGPNCISPTIVQQFGYQRRASD
                     DGKISDTSKTSNTIRVFLPNKQRTVVNVRNGMTLHDCLMKALKVRGLQPECCAVFRLV
                     TEPKGKKVRLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLL
                     NGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSNISDSGVPALPPLTMRRMR
                     ESVSRIPVSSQHRYSTPHVFTFNTSNPSSEGTLSQRQRSTSTPNVHMVSTTMPVDSRI
                     IEDAIRNHSESASPSALSGSPNNMSPTGWSQPKTPVPAQRERAPGTNTQEKNKIRPRG
                     QRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRN
                     EVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIAR
                     QTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGS
                     ILWMAPEVIRMQDSNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA
                     SPDLSKLYKNCPKAMKRLVADCLKKVREERPLFPQILSSIELLQHSLPKINRSASEPS
                     LHRASHTEDINSCTLTSTRLPVF"
     misc_feature    197..199
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
     misc_feature    845..847
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
     misc_feature    872..874
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphothreonine, by autocatalysis. {ECO:0000250};
                     propagated from UniProtKB/Swiss-Prot (P05625.1);
                     phosphorylation site"
     misc_feature    1082..1084
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
     misc_feature    1565..1567
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
     misc_feature    1931..1933
                     /gene="RAF1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
ORIGIN      
        1 catagatgat gcacttcatc attttgtcat aggacttcac tgacataaag gaaaacgaaa
       61 gactgcatcc atggagcaca ttcagggagc ttggaagact atcagtaatg gttttggact
      121 caaggattct gtctttgatg gcccaaactg catttcaccg accattgtcc agcagtttgg
      181 ttatcagcgc cgagcatctg atgatggcaa gatatcagat acttccaaaa ccagtaatac
      241 cattcgagtt ttcttgccca acaagcaacg tacagtggta aatgtgcgaa atgggatgac
      301 cttacatgat tgtctcatga aggcacttaa agtaagaggt ctgcagccag aatgctgtgc
      361 agtttttcgt cttgttactg aaccaaaagg taaaaaagtg cgtttggatt ggaacactga
      421 tgctgcctcc ttgattggtg aggaactgca ggtggacttt cttgatcacg ttccgctcac
      481 tacacacaat tttgctcgga agacatttct aaagcttgct ttctgtgaca tctgccagaa
      541 gttcctccta aatgggtttc ggtgtcagac gtgtggttat aaattccacg agcactgcag
      601 cactaaagtt ccaaccatgt gcgtcgactg gagcaatatc aggcaactct tattgttccc
      661 aaattcaaat atcagtgaca gtggtgtccc tgcactacct cccttgacaa tgagacggat
      721 gcgggagtct gtctcccgga tacctgttag ctcccagcac aggtattcta cacctcatgt
      781 ctttacattc aacacatcaa atccttcctc tgagggcacc ctttcccaaa gacagcgatc
      841 tacatccaca ccaaatgtcc acatggttag cactacaatg ccagtagaca gccggataat
      901 tgaggatgca attcgaaacc atagtgaatc agcttcaccc tccgctctgt ctgggagtcc
      961 taacaatatg agcccgactg gctggtctca gcccaaaacg ccagtcccag cccagaggga
     1021 gagagccccc ggaacgaata cacaggagaa aaataaaatt aggcctcgtg gacaaagaga
     1081 ttctagttat tactgggaaa tagaagcaag cgaagtcatg ctttctacca gaatagggtc
     1141 aggttctttt ggaactgttt acaaaggcaa atggcatggg gatgtagcag tgaaaatatt
     1201 aaaggttgta gatccaaccc cagaacagtt tcaggctttc agaaacgaag tggctgtatt
     1261 aaggaagacc cggcatgtta atattttgct cttcatgggc tacatgacta aagataacct
     1321 ggccattgtc acacagtggt gtgaaggcag cagtctgtat aaacacctgc acgttcaaga
     1381 gaccaagttc caaatgttcc agctcattga cattgctcgg cagacagcgc agggaatgga
     1441 ctatttgcat gcaaagaata tcatccacag agacatgaaa tccaataata tatttcttca
     1501 tgaaggcctc acagtgaaaa taggagactt tggtctagca actgtaaaat ccaggtggag
     1561 tggatcgcag caggtggagc aacccactgg ttccattttg tggatggcac cagaagtgat
     1621 acggatgcaa gacagcaatc cgttcagttt tcagtcagat gtctactcct atggaatagt
     1681 attgtatgag ctaatgacag gagagctgcc atactcccac ataaacaacc gcgaccagat
     1741 tattttcatg gttggtcgag gatatgcttc tccagacctc agcaagttgt acaagaactg
     1801 ccccaaagca atgaagaggc tcgtagcaga ttgtttgaag aaagttaggg aagaaagacc
     1861 cttgtttccg caaatactgt cttccattga attgctgcaa cattctttac ccaaaatcaa
     1921 ccggagtgct tccgaaccat ctctgcaccg cgcatcccat acagaggaca taaattcttg
     1981 cacgttaaca tccacaagac tgcctgtttt ttagaattgt gctccccttc ccttaatctc
     2041 tccagtgatg ggaaaggaac agaagtaaga gaagttgtgc ttttaatgcc tcagtgtaca
     2101 ggatcagtgc cagcaggatc atccgcatcc ccgtttaaga acaagctgct aaggatgttt
     2161 gcagttctta ccctgcaggg ac
//

LOCUS       NM_001257373            1096 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus mitochondrial ribosome associated GTPase 1 (MTG1),
            mRNA.
ACCESSION   NM_001257373 XM_003641467
VERSION     NM_001257373.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU380401.1, CR389870.1, BU362947.1 and BU282820.1.
            On Apr 11, 2012 this sequence version replaced gi:363735154.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR389870.1, BU259549.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201376 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                BU380401.1         1-14
            15-55               CR389870.1         14-54
            56-56               BU362947.1         54-54
            57-509              CR389870.1         56-508
            510-510             BU362947.1         508-508
            511-1089            CR389870.1         510-1088
            1090-1096           BU282820.1         756-762
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="6"
                     /map="6"
                     /breed="Leghorn"
     gene            1..1096
                     /gene="MTG1"
                     /note="mitochondrial ribosome associated GTPase 1"
                     /db_xref="CGNC:59226"
                     /db_xref="GeneID:791224"
     CDS             16..1005
                     /gene="MTG1"
                     /note="mitochondrial GTPase 1 homolog"
                     /codon_start=1
                     /product="mitochondrial ribosome-associated GTPase 1"
                     /protein_id="NP_001244302.1"
                     /db_xref="CGNC:59226"
                     /db_xref="GeneID:791224"
                     /translation="MRRWVGALRAAATVASGPCLESGGFRTRFDFGSRDAASWFPGHM
                     AKGLRQMRASLRRADCLVEVHDARIPLSGRNPVLQEVLGIRPHLLVLNKMDLADPRQQ
                     SRVLEQLRQQGCSYVVFTDCQRDSNVKKIVPLVAKLVNSSPRYHRAESTEYSIMVIGV
                     PNVGKSSLINSLRRLHLKKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGVLPP
                     KLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLNQQQQFGYMELYGLPEASDNIRH
                     VLKYVAVALGKTQKVKVLTGTGNVNMTMLDYSAAAYEFLRAFRAGRLGRLTLD"
ORIGIN      
        1 cgcaccggaa gtgtcatgag gcgctgggtg ggagcgctgc gggccgccgc caccgtcgcc
       61 tcagggccgt gcttggagtc cggcgggttc cgcacccgct tcgatttcgg cagccgcgat
      121 gcggcctcct ggttccctgg gcacatggcc aaagggctgc ggcagatgcg ggcctccctg
      181 cggcgtgccg actgcctcgt cgaagtgcac gacgctcgca tcccactgtc aggccgtaat
      241 cctgtgctgc aggaggtgct gggcatccgc ccgcatcttt tggtgctgaa caagatggac
      301 ctggctgacc cacgccagca gtcaagagtc ctggagcaac tgaggcagca gggatgctcg
      361 tatgttgtct tcactgattg tcagcgggac agcaatgtca agaagatcgt gcccctggtt
      421 gccaagctag tcaacagcag cccacgctac cacagggctg agagtactga gtacagcatc
      481 atggtgatcg gtgtgcccaa cgtaggcaaa tcatcgctta tcaactcttt gcggaggttg
      541 cacctcaaaa agggaaaagc cacagcagtg ggcggtgagc caggtgtcac caaggcggtg
      601 ctgacccgga tccaggtgtg cgagactccc ctggtgtatc tggtggacac gccaggtgtg
      661 ctgcccccaa agttggccga tgtggagacg gggatgaagc tggcattgtg tggagcgatc
      721 cgtgaccact tggtgggtga ggacatcatg gctgactacc tgctgtatgt actgaaccag
      781 cagcagcagt ttgggtacat ggagctctat ggactgcccg aggccagtga caacatcagg
      841 catgtgctga agtatgttgc ggtcgccctg ggcaagacgc agaaggtgaa ggtgctgaca
      901 ggcacaggga atgtcaacat gacgatgctc gactactcgg ctgctgccta tgagttcctg
      961 cgggccttcc gtgctgggcg cctgggtaga ctgacactgg actgagggtc ctggagtaga
     1021 gcaggacatc ccacatctcc gccagctcca ggtggtggtt tggtgtgatt aaagctgctt
     1081 tgttcctgga tgggtc
//

LOCUS       NM_001128828            6982 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript
            variant 1, mRNA.
ACCESSION   NM_001128828 XM_425812
VERSION     NM_001128828.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 6982)
  AUTHORS   Nakata D and Troy FA 2nd.
  TITLE     Degree of polymerization (DP) of polysialic acid (polySia) on
            neural cell adhesion molecules (N-CAMS): development and
            application of a new strategy to accurately determine the DP of
            polySia chains on N-CAMS
  JOURNAL   J. Biol. Chem. 280 (46), 38305-38316 (2005)
   PUBMED   16172115
  REMARK    GeneRIF: analysis of polymerization of polysialic acid on neural
            cell adhesion molecules
REFERENCE   2  (bases 1 to 6982)
  AUTHORS   Milev P, Maurel P, Haring M, Margolis RK and Margolis RU.
  TITLE     TAG-1/axonin-1 is a high-affinity ligand of neurocan,
            phosphacan/protein-tyrosine phosphatase-zeta/beta, and N-CAM
  JOURNAL   J. Biol. Chem. 271 (26), 15716-15723 (1996)
   PUBMED   8663515
REFERENCE   3  (bases 1 to 6982)
  AUTHORS   Colwell G, Li B, Forrest D and Brackenbury R.
  TITLE     Conserved regulatory elements in the promoter region of the N-CAM
            gene
  JOURNAL   Genomics 14 (4), 875-882 (1992)
   PUBMED   1478668
REFERENCE   4  (bases 1 to 6982)
  AUTHORS   Rao Y, Wu XF, Gariepy J, Rutishauser U and Siu CH.
  TITLE     Identification of a peptide sequence involved in homophilic binding
            in the neural cell adhesion molecule NCAM
  JOURNAL   J. Cell Biol. 118 (4), 937-949 (1992)
   PUBMED   1380002
REFERENCE   5  (bases 1 to 6982)
  AUTHORS   Cunningham,B.A., Hemperly,J.J., Murray,B.A., Prediger,E.A.,
            Brackenbury,R. and Edelman,G.M.
  TITLE     Neural cell adhesion molecule: structure, immunoglobulin-like
            domains, cell surface modulation, and alternative RNA splicing
  JOURNAL   Science 236 (4803), 799-806 (1987)
   PUBMED   3576199
REFERENCE   6  (bases 1 to 6982)
  AUTHORS   Hemperly,J.J., Edelman,G.M. and Cunningham,B.A.
  TITLE     cDNA clones of the neural cell adhesion molecule (N-CAM) lacking a
            membrane-spanning region consistent with evidence for membrane
            attachment via a phosphatidylinositol intermediate
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 83 (24), 9822-9826 (1986)
   PUBMED   3467341
  REMARK    Erratum:[Proc Natl Acad Sci U S A 1987 May;84(9):3069]
REFERENCE   7  (bases 1 to 6982)
  AUTHORS   Cole,G.J., Loewy,A., Cross,N.V., Akeson,R. and Glaser,L.
  TITLE     Topographic localization of the heparin-binding domain of the
            neural cell adhesion molecule N-CAM
  JOURNAL   J. Cell Biol. 103 (5), 1739-1744 (1986)
   PUBMED   2430978
REFERENCE   8  (bases 1 to 6982)
  AUTHORS   Murray,B.A., Owens,G.C., Prediger,E.A., Crossin,K.L.,
            Cunningham,B.A. and Edelman,G.M.
  TITLE     Cell surface modulation of the neural cell adhesion molecule
            resulting from alternative mRNA splicing in a tissue-specific
            developmental sequence
  JOURNAL   J. Cell Biol. 103 (4), 1431-1439 (1986)
   PUBMED   3771645
REFERENCE   9  (bases 1 to 6982)
  AUTHORS   Hemperly,J.J., Murray,B.A., Edelman,G.M. and Cunningham,B.A.
  TITLE     Sequence of a cDNA clone encoding the polysialic acid-rich and
            cytoplasmic domains of the neural cell adhesion molecule N-CAM
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 83 (9), 3037-3041 (1986)
   PUBMED   3458261
  REMARK    Erratum:[Proc Natl Acad Sci U S A 1988 Mar;85(6):2008]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000117.1.
            On Apr 6, 2012 this sequence version replaced gi:193220937.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer protein (isoform 1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-242               AADN04000117.1     1215672-1215913     c
            243-317             AADN04000117.1     1179523-1179597     c
            318-536             AADN04000117.1     1177762-1177980     c
            537-680             AADN04000117.1     1177055-1177198     c
            681-818             AADN04000117.1     1176052-1176189     c
            819-936             AADN04000117.1     1175462-1175579     c
            937-1106            AADN04000117.1     1174938-1175107     c
            1107-1249           AADN04000117.1     1174679-1174821     c
            1250-1400           AADN04000117.1     1167323-1167473     c
            1401-1585           AADN04000117.1     1166565-1166749     c
            1586-1682           AADN04000117.1     1166116-1166212     c
            1683-1853           AADN04000117.1     1165618-1165788     c
            1854-1985           AADN04000117.1     1165055-1165186     c
            1986-2110           AADN04000117.1     1153742-1153866     c
            2111-2291           AADN04000117.1     1152847-1153027     c
            2292-2499           AADN04000117.1     1143238-1143445     c
            2500-2616           AADN04000117.1     1142932-1143048     c
            2617-3399           AADN04000117.1     1140940-1141722     c
            3400-6982           AADN04000117.1     1135018-1138600     c
FEATURES             Location/Qualifiers
     source          1..6982
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
                     /breed="Red Jungle Fowl"
     gene            1..6982
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /note="neural cell adhesion molecule 1"
                     /db_xref="CGNC:5910"
                     /db_xref="GeneID:428253"
     CDS             191..3520
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /EC_number="2.7.11.1"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1"
                     /codon_start=1
                     /product="neural cell adhesion molecule 1 isoform 1
                     precursor"
                     /protein_id="NP_001122300.2"
                     /db_xref="CGNC:5910"
                     /db_xref="GeneID:428253"
                     /translation="MLPAAALPWTLFFLGAAASLQVDIVPSQGEISVGESKFFLCQVA
                     GEAKYKDISWFSPNGEKLTPNQQRISVVRNDDFSSTLTIYNANIDDAGIYKCVVSSVE
                     EGDSEATVNVKIFQKLMFKNAPTPQEFKEGDDAVIVCDVVSSLPPTIIWKHKGRDVIL
                     KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPSVRARQ
                     STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKK
                     VDKSDEAEYICIAENKAGEQDATIHLKVFAKPKITYVENKTAMELEDQITLTCEASGD
                     PIPSITWKTSTRNISNEEKTLDGRIVVRSHARVSSLTLKEIQYTDAGEYVCTASNTIG
                     QDSQAMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAVISWFRDGQLLPSSNY
                     SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESSEFILVQADTPSSPSIDRV
                     EPYSSTARVEFDEPEATGGVPILKYKAEWRALGEGEWHSRLYDAKEANVEGTITISGL
                     KPETTYSVRLSAVNGKGVGEISLPSDFKTQPVREPSAPKLEGQMGEDGNSIKVNVIKQ
                     DDGGSPIRHYLIKYKAKHSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVIAENQQGK
                     SKPAHYAFRTSAQPTVIPASTSPTSGLGTAAIVGILIVIFVLLLVAVDVTCYFLNKCG
                     LLMCIAVNLCGKSGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTE
                     PNETTPLTEPEHTADTAATVEDMLPSVTTGTTNSDTITETFATAQNSPTSETTTLTSS
                     IAPPATAIPDSNAMSPGQATPAKAGASPVSPPPPSSTPKVAPLVDLSDTPSSAPATNN
                     LSSSVLSNQGAVLSPSTVANMAETSKAAAGNKSAAPTPANLTSPPAPSEPKQEVSSTK
                     SPEKEAAQPSTVKSPTETAKNPSNPKSEAASGGTTNPSQNEDFKMDEGTFKTPDIDLA
                     KDVFAALGTTTPASVASGQARELASSTADSSVPAAPAKTEKTPVEDKSEVQATETKTP
                     PAEVKTVPNEATQTNENESKA"
     sig_peptide     191..247
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    644..658
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     Region: Heparin-binding. {ECO:0000255}"
     misc_feature    671..685
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     Region: Heparin-binding. {ECO:0000255}"
     misc_feature    2324..2377
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     transmembrane region"
ORIGIN      
        1 gtcacggcgg cggcgccggg aggcggccgg ggcgcagcgg gcggagcggg gacacgcgcg
       61 gagcggagcg gagcggcgcg aaggggacgc ggggcaaaaa cgggaagatc catccggagg
      121 gccgcgtggt gctccgcccg cacggaacgg ctatttcgga gcggcccctc tcgccccccc
      181 gccggctgcg atgctgcccg ccgccgcgct gccctggacg ttgttttttc tcggagccgc
      241 agcctctcta caagtggata ttgttccaag tcagggagag atcagcgttg gagaatccaa
      301 gttcttctta tgtcaagtgg caggggaagc caaatacaaa gacatttcct ggttttcccc
      361 taacggtgag aagctgacgc ccaaccaaca gcgcatctca gtggtgcgaa atgatgactt
      421 ctcctccacc ctcaccatct acaacgccaa cattgatgat gctggcatct ataaatgtgt
      481 tgtcagcagc gtggaggagg gagactctga agccaccgtc aatgtgaaaa ttttccaaaa
      541 gctcatgttc aagaatgccc ccactcctca ggaattcaag gaaggggatg atgctgtgat
      601 tgtgtgtgat gtggtcagct cgctgcctcc taccatcatc tggaaacaca aaggcaggga
      661 tgtcatccta aaaaaagatg ttcggtttat agtgctgtcc aacaactacc tgcagatccg
      721 gggaatcaag aaaacagatg aagggacgta ccgctgtgag ggccgcatcc tggctcgtgg
      781 ggagatcaac ttcaaagata ttcaggtcat tgtaaatgta cctccttctg tgcgtgccag
      841 gcagagcact atgaacgcca ctgccaacct cagccagtct gtcaccttag catgtgatgc
      901 tgatggcttt cctgagccaa ccatgacgtg gacaaaggat ggagagccaa tagagcagga
      961 ggataacgaa gagaaataca gttttaacta tgatgggtcc gagctgatca tcaagaaggt
     1021 ggataagagt gacgaagcag agtacatctg catcgctgag aacaaggctg gcgagcagga
     1081 tgccaccatt catctcaaag tctttgcaaa acccaaaatc acatatgtgg agaataaaac
     1141 agctatggag ctggaggatc agatcacact gacctgtgag gcctctgggg acccaatccc
     1201 ttccatcacg tggaaaactt ccacccggaa catcagcaat gaagagaaga ccctggatgg
     1261 gcgcatcgtg gtgcgcagcc acgcgcgggt atcgtccctg actctcaaag aaatccagta
     1321 cacagacgcc ggagagtacg tgtgcacggc cagcaacacc atcgggcagg actcacaggc
     1381 catgtacctc gaagtgcagt atgctcccaa gcttcagggc cctgtggctg tctatacctg
     1441 ggaagggaat caagtgaaca tcacctgtga ggtatttgct tatcccagtg ctgtcatctc
     1501 ctggttccga gatggacagc tgcttcccag ctcaaactac agcaacatca agatctacaa
     1561 cactccatca gcaagctacc tggaggtgac accagactct gaaaatgact ttggcaacta
     1621 caactgcact gctgtgaacc gcattggcca ggaatcctca gagttcattc ttgtgcaggc
     1681 ggatactccg tcctctcctt ctattgacag agtggagccc tactctagta ctgcccgtgt
     1741 ggagttcgat gagcctgaag ctactggtgg ggtgcccatc ctcaaataca aagcagagtg
     1801 gagagcactg ggtgaaggag aatggcactc aagattgtat gatgcaaaag aggcaaatgt
     1861 ggagggcacg atcactatca gtggcctgaa acctgagaca acctactcag tgagactgtc
     1921 tgcagtcaat ggcaagggtg tgggtgagat tagcctgcca tccgacttca agacacagcc
     1981 agttcgggaa cccagtgcac ccaaactgga agggcagatg ggagaagacg gaaactccat
     2041 caaagtgaac gttatcaagc aggatgatgg tggctcccca atcaggcatt acctgatcaa
     2101 atacaaagct aaacattcct cagaatggaa accagagatc agactgcctt ctggcagtga
     2161 ccacgtcatg ctcaagtctc tggactggaa tgcagagtat gaggtttatg tgatagctga
     2221 aaaccagcag gggaagtcca aacccgctca ctacgctttc cggacatctg ctcagcctac
     2281 tgtcatccca gccagcacta gccctacgtc aggcctgggg actgctgcca tcgtaggcat
     2341 tctcattgtt atctttgtgc tgctcctggt ggctgtggac gtcacctgct acttcctgaa
     2401 caaatgtggc ctgctcatgt gcattgctgt caacttatgt ggcaagtctg gaccaggagc
     2461 caagggcaaa gacatggagg agggcaaagc tgccttctcg aaagatgagt ccaaggagcc
     2521 tattgtggaa gtgcggactg aagaggagcg gacccccaac catgatgggg gaaaacacac
     2581 agagcccaac gagaccaccc cactaacaga accagagcac accgccgata ctgcagctac
     2641 tgttgaggac atgctgcctt ctgtaactac gggcaccact aactctgaca ctatcactga
     2701 aacttttgcc actgctcaga acagccccac gagcgagacc accaccctga cctccagtat
     2761 tgccccgcca gccacggcca ttcctgactc aaacgccatg tcgcctggcc aggctactcc
     2821 agccaaagcg ggagcctccc ctgtctctcc accaccaccc tcctctacgc ccaaagtggc
     2881 cccccttgtt gatctcagcg ataccccaag ctctgctcca gctactaata atttgtcttc
     2941 aagtgtcctg tccaaccaag gtgcagtgct gagccccagc actgttgcta acatggccga
     3001 gacctccaaa gcagcagctg gtaacaagtc agctgcccca acccctgcaa acctcactag
     3061 tcctccagct ccatcagagc ccaagcagga ggtctcaagc accaagagcc ccgagaaaga
     3121 agctgcgcag cccagtacag tgaagagccc aacagagaca gccaagaatc caagcaatcc
     3181 gaagagtgag gctgcttcag gcggcaccac aaacccctcc cagaatgagg actttaaaat
     3241 ggacgaaggg accttcaaga caccagacat tgatcttgca aaggatgttt ttgcagctct
     3301 tggcactact actcctgcca gtgtggctag tgggcaagct cgtgagcttg cttcttccac
     3361 tgcagacagc tctgtacctg ctgcacctgc aaagaccgag aaaaccccag tagaagacaa
     3421 atctgaagtg caagcaacgg aaactaagac acctccagca gaagtgaaga cggtccccaa
     3481 cgaagccaca caaacaaatg agaatgagag caaagcatga tcagcgacag atgaaaaacc
     3541 atggcagaac gacttcaccc aagcatttac aacacgaaac acaacacaca tctcattcct
     3601 ctagtgtctg ttgccttttt tttaaaaaac aaacaaacaa acaaaacaga aaatgcataa
     3661 atggggaggg gggggttctc tctttttttc tttttctttt tcttaagatt tttaggaagg
     3721 ttctatttgt tgtgtacttg cttttaaaaa gtaacacgtt ttaaaaacag ggttaaaccc
     3781 atcaccagat cgggggctca gctgtcccct ggtatgttca aacaagcaga attgcagaat
     3841 accacttaga gcatcgctga ggagctcaga gtcacccagt cgtagacgaa aggaaaaaaa
     3901 gagaaaagaa aaaagaagac cctgttcttt ccttggttag aatagtagat ttaaccactg
     3961 tactgcttgc ctgcttggta caggcggtac ttagtgaaca aagtccacaa tttattttta
     4021 tacttttcag tcgagtttga aatatgtaaa gcctcataaa taagttataa tttctgttca
     4081 ccttgtgttc agtatgcaaa gtgtcgtgag cattttgtgg ctgaattctg ttctcctcgt
     4141 tagacattga ttttggggtt tattattttt gttaggaaga atgccaaaat tgcagcttcg
     4201 ggggatgtat ttcaatttgc agtattcaga ctctacattt ctttaaattt tatgttaatt
     4261 tttgccaact tttgttctct ccagtgttta caattgacat ttttttaact tttgttgtgt
     4321 ttaaatgtat ttgtaaaata gctgcctttt ttttaaagta aatccagact ctagctacta
     4381 ggttagcagc atgcttgctt tgcaaaggga gacattttga aatatcgatg tttacagtag
     4441 tttccccctt tatctttttt aattattatt attattataa ttattattat tatttcttac
     4501 tggagtaaga aaaaagagta atgctggtct ttggtttgtt ttaggggggt ggggcgtggg
     4561 gaatattcca accacttgtc accaatcgag gtctgtatcc agcaatccac ataaacacac
     4621 ttcactttga acgagagagt tgctggagag agtttcctta tatacttaaa tttattaaga
     4681 gtgtaagtcc cttgctggac ctgggcctga atgcataaga aaaatatcat ctctgctttt
     4741 ttaggacatt cttctctttc cttcatggaa ccctcccaga gctttgagaa gcagaagagg
     4801 gattgtacag ttagggctgg gctggtcttg tctccactgt ttgactacat ccatttctct
     4861 gtagaatgtt gataactgcc atttcctttg accccagaaa ctgatttaaa agcaatgcct
     4921 ttccgcactt aaataaagtt tccttttgag gagtggtaac actaaaaaca gaacatcctg
     4981 ctctcatgtg ggtgatgttc atgagcagag ggtgcttggc agcatgcagg tgtccttact
     5041 cattgcaggg aagttggact agatgaccct taagggtccc ttccaaccca aacgattcta
     5101 tgactctcca taagacccct tctgcaaagt cagctccagc acattgtgtc tgataagtca
     5161 tccgtgtatg ctttgcatca tccaggccat gtatccatgg ctgagtgctt gggcatcagt
     5221 gccaacgctc ccattgatgt ccctgctctt ctcatcatgc ttttagcagt cagagaaagg
     5281 ggctgatgtc acacatgcgt tgttgtggtc gtcactggga gtcatggagt aacactgaga
     5341 cttcagggtg ggaagaagag aaggttgagc agcaggaagg cagaggaaga ccagcccatt
     5401 gtatagaggt gctccttctc tgggggtttt gctttgtttg tttttctttt attttccatt
     5461 cttttttttt ttttttttct actttagatc tgcaagcttg tgcactgtgg gtgcgtgact
     5521 tttagtgtga aacgtgtttt ttgtcatagt attgaaataa ttgaaaaaaa aaaaaagctt
     5581 caacatagtt tggatgtgga aggtgtagcg gataggtcag atttaaaata tatatattca
     5641 ggaaaaaaaa aaagagaaca acttctagga ggaacacaag cctttaaatg acaaacccga
     5701 gctgatgatg gcatcattgc atcgcgccat ggggacgagc agaagggtga tggggttggg
     5761 gagatcatgc ttggctcggg tgaactgagc cactatcgtt ggtgtgtcct tctgagtatg
     5821 cagtctttta cagtggcatc acatgatttc aaacagtgta aaacagtggt tttgtcattt
     5881 gctaagtgtg gggtttttgc attttttcct cagctcctgg ggatggaagt ggaggatggc
     5941 tggctatgca ggcacagaca ctcaggcaat accatcccag gcagaacagc agggcaggac
     6001 aggttcccac ttgagagcct tgtgtcagat tcagcccatg cttgacccat gacagcagcg
     6061 ttgatgtaag taaggcgaaa tttggtccgt ggtccctagg accttatata tcatgcctcc
     6121 ccgagcagca acaggagcaa acgctgctca gcgcagtgac ccggagtatg tccagtgcca
     6181 ctgatcagca cccattgggt ggcactgtgg tggctgtcac ccagactggt gtttctgcca
     6241 tgtaaggcca ccagcccagg gccccatcca gcacccggcc gtgtcacagt gcccggtacc
     6301 tgctgggttg tgtcctgtgg atggagcctc tgtgctgctc ccttagtgcc cctgtgacct
     6361 ccccatcccc agaaccctta gattaatttt ggagagtgtt tttatacttg cccttaatgg
     6421 agaataattt gttttaactt ataaatatcc cattcccaag gtagcttagg cttcattgct
     6481 tttatttaaa cctttgaaga gggaccaacc tgatgccgtt tgcgctgtat atgtttatat
     6541 atgtatccat gccatacata tatatatcta tatggcaact cagactgatc agcttctagt
     6601 tgtggagtga catttcatgc tgcaccatac gtaacgatga tgaggtaata gtgcatccag
     6661 ttgttcagct tttagagtgg aattttattt tcacactttt ctatggagcc ttcaaacccc
     6721 aggttttcac actaggctgt tttgatagtt gttctcagac ctccactgac atccttaccc
     6781 agcattccct acttttgggg gccttctatc ttgttaaaaa aacaaaaaaa caaaaaatct
     6841 ttttaccgag tgaaacatca gttccacctt tattcccatt ctcactggtg taaatactga
     6901 tactaactga ggattttgac tttgcattct gtcagaatac tgtgttcaaa taaaaattac
     6961 aaaaaaaaaa taccaacaaa aa
//

LOCUS       NM_001252284            2790 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus myelin protein zero like 2 (MPZL2), mRNA.
ACCESSION   NM_001252284
VERSION     NM_001252284.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            AADN04000117.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU399092.1, BX932694.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-354               AADN04000117.1     800833-801186       c
            355-521             AADN04000117.1     798706-798872       c
            522-732             AADN04000117.1     797908-798118       c
            733-2790            AADN04000117.1     795605-797662       c
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
                     /breed="Red Jungle Fowl"
     gene            1..2790
                     /gene="MPZL2"
                     /gene_synonym="eva; EVA1"
                     /note="myelin protein zero like 2"
                     /db_xref="CGNC:51090"
                     /db_xref="GeneID:419779"
     misc_feature    132..134
                     /gene="MPZL2"
                     /gene_synonym="eva; EVA1"
                     /note="upstream in-frame stop codon"
     CDS             300..881
                     /gene="MPZL2"
                     /gene_synonym="eva; EVA1"
                     /note="epithelial V-like antigen 1"
                     /codon_start=1
                     /product="myelin protein zero-like protein 2 precursor"
                     /protein_id="NP_001239213.1"
                     /db_xref="CGNC:51090"
                     /db_xref="GeneID:419779"
                     /translation="MPGPTWLGAVLVLGVQLRALWPVAAIEVYTSKEVYAVNGTSLRL
                     KCTFSSSSPISPLLSVTWNFQPEDLSSHEPVFYYLKEPYTPSAGRFKGRITWDGHIER
                     HDVSIVIWDLQPTDNGTFTCQVKNPRDIDGTIGEVRLRVVQKVNFSEIHFLAIAIGSA
                     CGLMIIVVTLVIICRHRRKKQQEKMIEVADTEL"
     sig_peptide     300..374
                     /gene="MPZL2"
                     /gene_synonym="eva; EVA1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 ggatgattgc aacacaaaag agcaggggaa tatgggaggc agaagaaatt aatcttacct
       61 tgaaaatctg cctgctttac acgcagaagt gaaccgtctg actgccccac ctcaccttca
      121 gtgcagggca gtgacggggc aggaagacgt attgccttcc aggccaagct gagaaaaagg
      181 aatttactca accggcccgg gaaggctttg agaaactcat cttttatccg gttttcaaga
      241 gcctgaaaca aacttccccc tgtgctgctc agcccgcaga gcacggactt gtttccccga
      301 tgcctggccc cacctggctg ggggctgtgc tcgtccttgg ggtacagctc cgagcactgt
      361 ggcctgttgc agccatagaa gtttatactt ctaaggaggt gtatgctgtg aatggaacta
      421 gcctacggct caaatgcacc ttctccagca gcagccctat tagcccactg ctgtcagtga
      481 cctggaactt ccagcccgag gacctaagct ctcatgagcc agtattttat tatctcaagg
      541 agccctacac gccgtctgct ggacgattta aagggcgaat cacttgggat gggcatattg
      601 agcgtcatga tgtttccatc gttatctggg atttacagcc cactgacaat ggaacattca
      661 cctgccaagt gaagaaccca cgagacatcg atggcaccat tggagaagtg cgactcagag
      721 ttgtgcagaa agtgaatttc tcagaaatcc acttccttgc catagccatt gggtctgcat
      781 gtggtctgat gatcattgtg gtgacacttg tgattatctg tcggcatcgt cggaagaaac
      841 agcaagagaa gatgatcgag gtggcagaca ctgaactgta agcacaaaag gggagaggga
      901 gaaaggcttc tgggaaagct tgtcaaatat atcttcatgg gcattctgaa tcattggctt
      961 gggtcctata ttaagcatct acaatgcaaa actgccaaca taattagcaa taattggctg
     1021 cttacttgca gtcagaacag agccccaggg acgaatgaac tttggagtct tcattttgct
     1081 cttctacttt gaggtggctc cttactcaga gtagaagccc atacaaattc ctgttatata
     1141 ctatgtatgt tgtatgtagc tcagaacctc actgctgctc aggatatctg atgctgattt
     1201 tctttttttt tccttttttt attattgttt tgtcactttt ttcatagcag cagagaaaag
     1261 gagaagctga agaatattgg agagaaggaa atcactccat tagaagacta gaggtctctg
     1321 atagtatata caatgcaggt atctaatcaa acattctcta attaatgtgt tggtgttact
     1381 gcagactttc tagacagttt tatttacgta tttcacatcc attctgcagt cagcaggcca
     1441 cagtggccat aaatatgaac aactaagacc acagacacat gttgctcttg aggaaccttc
     1501 agaggaagac tgaaaactga ataggcggtc gtgacagagc ttaaccttaa tctctcttaa
     1561 ccataagagg gatttctcca ccttattgct gaggatcatt gcaggaaagc aattattgct
     1621 gctttccatg ttgtgcttgc tctgtggaga gaggaataaa ttccctttca ctagttttga
     1681 atatgctttt tgattcactt aatctttaat tccttataat cgctacagga agactgaaac
     1741 tctttccaga tttgctggcc ttactgaaat atttcagccc agtttttccc cattcaattt
     1801 ctgaggtcaa cagatgcttc ccccatgttt gttttcaaca ataatcatga gtaatgaatg
     1861 ttttgttttt cttccaatcc tccttctcag gtacttctaa agcagatggt gaaagcttgt
     1921 aattttggat cttagaacaa agctgaatta cagacgcctg atgctggaag tgtggtatcc
     1981 ctgctcaacc tgaaattctt gcaagaaaag agagtgacct taacataagt tgtaaagtgt
     2041 tatttccttc actgaagaac aacaggaaga ccttgcccca cgaacaggga gccgtcctta
     2101 atctccacag ctgccaaacg tgaacaaatt ggttgtgagg atgcaatgtc agccgatttg
     2161 aaccaaacgc cgagatgagt gactggatag atatttgctg tgtctgagca ggcacacgct
     2221 cgtgcacctt aaaaattgaa aggtaccttt gtgctgccag attattgtgt ctggtgtcac
     2281 ctaaaggaag accattaggt gagggatcag aggagctgct acaacgtact ttaagtcgct
     2341 ttgctactgt aagtggaaag tgttacagat aaggaatgtc tgctgtttcc tgttagggat
     2401 aactggacca gtgggtgtgt ttttcacgcc agtaggcttt gtccatggaa tagctgagaa
     2461 aacatcctcc cactggcaca gcactgtttc tctggatgtt gcttaaagcc ccacatagca
     2521 ccagcacatc ttacccctgt aaatccacct gtttaacaca ttccctgtat tttcatcgaa
     2581 cctcaagcaa acggaacccc gggtcactaa aaccactgag ctatttgggt gtttaaccaa
     2641 cactaaatca aaatatcagc ctgtttattc aaagagtaac tttatggctt tataactctt
     2701 gagtgtaaca tgctgaccaa gttatctgtt tgtacagttt tgttttctat cgtgtccatc
     2761 ataaataaac gcggtttgtg ggtagaagtg
//

LOCUS       NM_001006305             971 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus NFU1 iron-sulfur cluster scaffold (NFU1), mRNA.
ACCESSION   NM_001006305 XM_417664
VERSION     NM_001006305.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
            HS, Cho BW and Han JY.
  TITLE     Analysis of chicken embryonic gonad expressed sequenced tags
  JOURNAL   Anim. Genet. 37 (1), 85-86 (2006)
   PUBMED   16441308
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol. 6 (1), R6 (2005)
   PUBMED   15642098
REFERENCE   3  (bases 1 to 971)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN210054.1, CV862347.1 and BU403624.1.
            On Sep 27, 2011 this sequence version replaced gi:57529446.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ721119.1, BU330969.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-679               CN210054.1         1-679
            680-905             CV862347.1         613-838
            906-968             CV862347.1         839-901
            969-971             BU403624.1         705-707
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="22"
                     /map="22"
                     /breed="Leghorn"
     gene            1..971
                     /gene="NFU1"
                     /gene_synonym="HIRIP5"
                     /note="NFU1 iron-sulfur cluster scaffold"
                     /db_xref="CGNC:14"
                     /db_xref="GeneID:419513"
     CDS             30..788
                     /gene="NFU1"
                     /gene_synonym="HIRIP5"
                     /note="HIRA interacting protein 5"
                     /codon_start=1
                     /product="NFU1 iron-sulfur cluster scaffold homolog,
                     mitochondrial"
                     /protein_id="NP_001006305.2"
                     /db_xref="CGNC:14"
                     /db_xref="GeneID:419513"
                     /translation="MAAARWLGAAAGLGGRICHTMLKGHNLTTQQPFHQLARRKQLLP
                     SAVLHNTVRCMFIQTQDTPNPNSLKFIPGKEVLESRTMEFSSPAAAFCSPLARQLFRI
                     EGVKSVFFGPDFITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEAPRTDTAQS
                     EEDDEVVLMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLK
                     NGIQNMLQFYIPEVEGVEQVVDDDDDVEKEANST"
ORIGIN      
        1 gcggagcggc ggccgtgagg aacgccaaga tggcggctgc gcggtggctc ggcgcggctg
       61 cggggctggg cggccggatt tgtcacacga tgttaaaagg tcataacctg acaactcaac
      121 agcccttcca ccaacttgca aggaggaaac agcttcttcc atctgcagtg ttgcataata
      181 cagtaagatg catgtttatt caaactcagg acacaccaaa cccaaacagc ctgaagttta
      241 ttccaggcaa agaagtgctg gagtccagga ctatggagtt ttccagccca gctgcagcat
      301 tttgctcacc tctagcaagg cagttattca gaattgaagg agttaaaagc gttttctttg
      361 ggccagactt catcaccatc accaaggaga gtgaagacct ggattggaac ttgctgaaac
      421 cagatattta tgcaactata atggatttct ttgcctcagg tttacctgta cttactgaag
      481 aggcacctag gacagataca gctcagtcag aagaagacga tgaagttgtg ttaatgatta
      541 aagaactgct ggatacaaga ataaggccaa cagtgcaaga agatggtggt gatgttattt
      601 ataaaggctt tgaggatggc attgtgcagc tgaagttgca gggttcatgc accagctgtc
      661 ccagttccat catcaccctg aagaacggga tacagaacat gctccagttc tacatccctg
      721 aagtggaagg cgtggaacag gttgttgatg atgatgatga tgtggagaaa gaagcaaatt
      781 ctacgtgagc ttccatcatc cgtggccaaa tcagtattta tttcatgtac gtaaatcagc
      841 ctcgttctgt ggaacaacca aatctgcctt tctcatcaga aaaagagtca cacttccacc
      901 tgtgagagtg tctgctcagt gtcagcagcg tgttcactaa tttattaaat gctgtctgtt
      961 caaacaaaga a
//

LOCUS       NM_001024456            3708 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus N-ethylmaleimide sensitive factor, vesicle fusing
            ATPase (NSF), mRNA.
ACCESSION   NM_001024456 XM_418094
VERSION     NM_001024456.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR406350.1.
            On Sep 21, 2011 this sequence version replaced gi:118102798.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR406350.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="27"
                     /map="27"
                     /breed="Leghorn"
     gene            1..3708
                     /gene="NSF"
                     /note="N-ethylmaleimide sensitive factor, vesicle fusing
                     ATPase"
                     /db_xref="CGNC:715"
                     /db_xref="GeneID:419972"
     CDS             6..2228
                     /gene="NSF"
                     /EC_number="3.6.4.6"
                     /codon_start=1
                     /product="vesicle-fusing ATPase"
                     /protein_id="NP_001019627.1"
                     /db_xref="CGNC:715"
                     /db_xref="GeneID:419972"
                     /translation="MAGRPMQAARCPTDELSLTNCAVVNDTDFPSGQHVVVKTSPNHK
                     YIFTLRTHPSVVPGNIAFSLPQRKWAGLSIGQEIDVSLYTFDKSKQCIATMTIEIDFL
                     QKKNIDSNPYDTDKMAAEFIQQFNSQAFSVGQQLVFSFNDKLFGLLVKSMEGMDPSIL
                     KGESGASKKQKIEVGLVFGNSQVAFEKAENSSLNLIGKSKTKENRQSIINPDWNFEKM
                     GIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLMARQIGKM
                     LNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGVHIIIFDEIDAIC
                     KQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVK
                     MEIGLPDEKGRFQILHIHTVRMREHQLLAEDVDIAELAVETKNFSGAELEGLVRAAQS
                     TAMNRHIKASTKVEVDMEKAESLRVTRGDFFASLENDIKPAFGTNQEDYASYIMNGII
                     KWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK
                     ICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQ
                     ALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLMEALEL
                     LGNFKDKERSTIAQNVKGKSVWIGIKKLLMLIEMSLQMDPEYRVKKFLALLREEGTVP
                     "
ORIGIN      
        1 acaagatggc ggggcggcct atgcaagcag cacgatgtcc cactgatgaa ctgtcattaa
       61 cgaactgtgc ggtggtgaat gacacagact tcccatctgg acaacacgtt gtggtgaaga
      121 cttctcccaa tcacaaatac atcttcacac tgagaacaca tccctctgtt gttcctggca
      181 acatcgcctt cagcttgccc cagagaaaat gggctggact ttccatagga caagagatag
      241 acgtttccct gtacactttc gacaagtcta agcagtgtat tgccacgatg acgattgaga
      301 tagactttct gcagaagaag aacattgact ccaacccata tgacacagac aagatggctg
      361 ctgagttcat ccagcagttc aacagccagg ccttctctgt agggcagcag cttgtgttca
      421 gttttaacga caaacttttc ggcctgttgg taaagtccat ggaaggaatg gatcccagca
      481 tcctcaaagg agagtctgga gcaagcaaaa agcagaagat tgaggtgggt ttggtttttg
      541 gaaacagcca agtggccttt gaaaaagctg agaattcctc tctcaatctg attggtaaat
      601 caaagaccaa agagaaccgc cagtccatca tcaacccaga ctggaatttt gagaaaatgg
      661 gcattggggg cctcgacaaa gagttctcag atatcttccg acgagctttt gcttctcgag
      721 tttttccacc tgaaattgtg gagcaaatgg gctgcaagca tgtgaaaggc attctgctgt
      781 atggacctcc aggctgtggt aaaacgctta tggccagaca gattggcaag atgctgaatg
      841 ccagagaacc aaaagtggtc aacgggccag aaatcctcaa taaatacgtg ggcgagtctg
      901 aggccaacat ccgcaagctg tttgctgatg cagaagagga acaaagaagg cttggagcaa
      961 acagtggtgt tcatatcatc attttcgatg agattgatgc aatctgcaag cagcgaggaa
     1021 gcatggcagg aagcactgga gttcacgata ccgttgtcaa ccagctgctg tctaaaattg
     1081 atggagtgga gcaactcaat aacatcctgg tgattggaat gaccaacaga cctgacctga
     1141 ttgatgaagc tctgctgaga ccagggagac tggaggtgaa aatggagatt ggtttgccag
     1201 atgagaaggg tcgattccag attctccata tccacacagt aaggatgcgg gaacaccagc
     1261 tgctggctga agatgtggac attgcagaac tggcagttga gacaaaaaac ttcagtggtg
     1321 ctgaattaga aggtttagtt cgagctgctc agtctactgc aatgaacaga catatcaagg
     1381 ccagcaccaa agtggaagta gacatggaga aggcagaaag cttacgtgtg acaagaggag
     1441 acttctttgc atccttggag aatgatatca aaccagcatt tggaaccaac caggaagact
     1501 acgcgagtta tatcatgaat ggcattatta agtggggtga tccagtaacg agggtgttgg
     1561 atgatgggga gctgcttgtt caacaaacca agaacagtga ccgtactccg ctggttagcg
     1621 ttcttctaga aggtccccca cacagtggga agactgcatt agcagcaaag atagctgagg
     1681 aatccaactt ccctttcatc aagatctgtt ctcctgataa gatgattgga ttttcagaaa
     1741 cagccaaatg ccaggctatg aagaagatct ttgatgatgc atacaagtcc cagctcagct
     1801 gcgtcgttgt ggatgacatt gagagacttc tagattatgt tccaattggg ccacgttttt
     1861 ctaatctggt gttgcaagcc cttcttgtgc tgctgaagaa ggccccccct cagggtcgca
     1921 agctcctgat cattggaacc accagtcgca aagatgtcct gcaggaaatg gaaatgctga
     1981 atgctttcag caccacgatc catgtaccca acattgcaac aggggaacag ctgatggaag
     2041 ctttggagct cctgggtaac tttaaagata aggaacgcag caccattgca cagaacgtca
     2101 aagggaaatc tgtttggatc ggtatcaaga agctgctgat gctgatagag atgtcactac
     2161 aaatggatcc tgagtatcgg gtgaaaaaat tcttggctct tctgagagaa gaaggaacag
     2221 ttccctagac tgaagatgga ccaagtgcaa gatcagcagc tggaaaagtg accaacctgg
     2281 agaatataca ctgggatctt tactcttctg tgttcaacac actggacaaa gtgaaacact
     2341 cccctttttc caagaaccca atgtggaatt tgcatgttta gtgcaataca gtatctttat
     2401 tctttgtctt taatatacag atatcatgtg tcttctagaa cactgtgctt ctgtctctgt
     2461 gcaggcaagg ctgcgttctc atttgatttt agcatggggg aaatgttcta taagttttga
     2521 agcaacgctc acttatgtcc agcatccagt tactacagta ggaaagaaaa tgtgagttct
     2581 agtaaatcct gtggtgaagg cttattaaaa tactcctctg tgttctgatt tgatgaatgc
     2641 tttcttgttc ggttatgtca tcctatgcct cactgaacac tgagcagggc tgctaaccca
     2701 gagtcagtga ccacagtaat gaaacttcag aatttccaaa atgtaaatac ccattttctt
     2761 ttatgcccag gtgttttctg gctaatgata ataaggactg gaagaaggca gggaagtcta
     2821 ttgatcagaa caaaggaaaa acttcagaat ctggtatttt aaagcattga aacttgttct
     2881 caattcaaaa accggtttag tggtgctgat tccaacctga aagctctgta tgagtactct
     2941 gtatatgatg gttttggcat tagttggcct cactacatcc cagttttctg ccacattacc
     3001 aaaggatgaa gttcctcctt ggagatgaag ccaagctcta tggatgcacg agatgtgcat
     3061 tgccatgctt ttgcacttaa actaaggaat gtatcaaact ttgctatgtg gtctttcccc
     3121 aatagtcttt ttgcatcaat gaggtgctgt tatgatgact gcacgaggat actcccctgt
     3181 ggttccttgg ctccacatgt ttaataaggt tcatggaaca tacctcaatt tggtggggca
     3241 cgcaatcaaa gccatttatg aggtgttagt cagtgtagct tccttgactt gacaggacat
     3301 gctgttaagg gctagcagct tgtatccagc gaggtgttcc cagggaagga gggtgctttg
     3361 cgttttttca ggcccaaagg taaaggtact gcagtcctta ttgcatactt agggcaatca
     3421 gagtgtttca gtcactccac tctggtttct tttcctttgg cagtgctgtt gtattgtgat
     3481 gacattgcga gtcccagtgg ttattattcc ctctcattct gtgtatgatc ttgtgacttt
     3541 gtttgttcct ttctttcctc tgctagtccc tgtgacagca gcactcgtta acttatttca
     3601 gagtaaatga tgtaaacctt attgtgtcta tgtccagagc tatattgatg aataaatatc
     3661 ttgttcagtt gcacattatt ggattcaata aaaaaaagca caactgtg
//

LOCUS       NM_001242604            6232 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript
            variant 2, mRNA.
ACCESSION   NM_001242604 XM_001234121 XM_015298042
VERSION     NM_001242604.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 6232)
  AUTHORS   Nakata D and Troy FA 2nd.
  TITLE     Degree of polymerization (DP) of polysialic acid (polySia) on
            neural cell adhesion molecules (N-CAMS): development and
            application of a new strategy to accurately determine the DP of
            polySia chains on N-CAMS
  JOURNAL   J. Biol. Chem. 280 (46), 38305-38316 (2005)
   PUBMED   16172115
  REMARK    GeneRIF: analysis of polymerization of polysialic acid on neural
            cell adhesion molecules
REFERENCE   2  (bases 1 to 6232)
  AUTHORS   Milev P, Maurel P, Haring M, Margolis RK and Margolis RU.
  TITLE     TAG-1/axonin-1 is a high-affinity ligand of neurocan,
            phosphacan/protein-tyrosine phosphatase-zeta/beta, and N-CAM
  JOURNAL   J. Biol. Chem. 271 (26), 15716-15723 (1996)
   PUBMED   8663515
REFERENCE   3  (bases 1 to 6232)
  AUTHORS   Colwell G, Li B, Forrest D and Brackenbury R.
  TITLE     Conserved regulatory elements in the promoter region of the N-CAM
            gene
  JOURNAL   Genomics 14 (4), 875-882 (1992)
   PUBMED   1478668
REFERENCE   4  (bases 1 to 6232)
  AUTHORS   Rao Y, Wu XF, Gariepy J, Rutishauser U and Siu CH.
  TITLE     Identification of a peptide sequence involved in homophilic binding
            in the neural cell adhesion molecule NCAM
  JOURNAL   J. Cell Biol. 118 (4), 937-949 (1992)
   PUBMED   1380002
REFERENCE   5  (bases 1 to 6232)
  AUTHORS   Cunningham,B.A., Hemperly,J.J., Murray,B.A., Prediger,E.A.,
            Brackenbury,R. and Edelman,G.M.
  TITLE     Neural cell adhesion molecule: structure, immunoglobulin-like
            domains, cell surface modulation, and alternative RNA splicing
  JOURNAL   Science 236 (4803), 799-806 (1987)
   PUBMED   3576199
REFERENCE   6  (bases 1 to 6232)
  AUTHORS   Hemperly,J.J., Edelman,G.M. and Cunningham,B.A.
  TITLE     cDNA clones of the neural cell adhesion molecule (N-CAM) lacking a
            membrane-spanning region consistent with evidence for membrane
            attachment via a phosphatidylinositol intermediate
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 83 (24), 9822-9826 (1986)
   PUBMED   3467341
  REMARK    Erratum:[Proc Natl Acad Sci U S A 1987 May;84(9):3069]
REFERENCE   7  (bases 1 to 6232)
  AUTHORS   Cole,G.J., Loewy,A., Cross,N.V., Akeson,R. and Glaser,L.
  TITLE     Topographic localization of the heparin-binding domain of the
            neural cell adhesion molecule N-CAM
  JOURNAL   J. Cell Biol. 103 (5), 1739-1744 (1986)
   PUBMED   2430978
REFERENCE   8  (bases 1 to 6232)
  AUTHORS   Murray,B.A., Owens,G.C., Prediger,E.A., Crossin,K.L.,
            Cunningham,B.A. and Edelman,G.M.
  TITLE     Cell surface modulation of the neural cell adhesion molecule
            resulting from alternative mRNA splicing in a tissue-specific
            developmental sequence
  JOURNAL   J. Cell Biol. 103 (4), 1431-1439 (1986)
   PUBMED   3771645
REFERENCE   9  (bases 1 to 6232)
  AUTHORS   Hemperly,J.J., Murray,B.A., Edelman,G.M. and Cunningham,B.A.
  TITLE     Sequence of a cDNA clone encoding the polysialic acid-rich and
            cytoplasmic domains of the neural cell adhesion molecule N-CAM
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 83 (9), 3037-3041 (1986)
   PUBMED   3458261
  REMARK    Erratum:[Proc Natl Acad Sci U S A 1988 Mar;85(6):2008]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000117.1.
            On or before Feb 10, 2016 this sequence version replaced
            gi:971431482, gi:118102015.
            
            Transcript Variant: This variant (2) lacks several alternate
            in-frame exons compared to variant 1. The resulting protein
            (isoform 2) is shorter compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-242               AADN04000117.1     1215672-1215913     c
            243-317             AADN04000117.1     1179523-1179597     c
            318-536             AADN04000117.1     1177762-1177980     c
            537-680             AADN04000117.1     1177055-1177198     c
            681-818             AADN04000117.1     1176052-1176189     c
            819-936             AADN04000117.1     1175462-1175579     c
            937-1106            AADN04000117.1     1174938-1175107     c
            1107-1249           AADN04000117.1     1174679-1174821     c
            1250-1279           AADN04000117.1     1170826-1170855     c
            1280-1430           AADN04000117.1     1167323-1167473     c
            1431-1615           AADN04000117.1     1166565-1166749     c
            1616-1712           AADN04000117.1     1166116-1166212     c
            1713-1883           AADN04000117.1     1165618-1165788     c
            1884-2015           AADN04000117.1     1165055-1165186     c
            2016-2018           AADN04000117.1     1159682-1159684     c
            2019-2143           AADN04000117.1     1153742-1153866     c
            2144-2324           AADN04000117.1     1152847-1153027     c
            2325-2532           AADN04000117.1     1143238-1143445     c
            2533-2649           AADN04000117.1     1142932-1143048     c
            2650-6232           AADN04000117.1     1135018-1138600     c
FEATURES             Location/Qualifiers
     source          1..6232
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
     gene            1..6232
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /note="neural cell adhesion molecule 1"
                     /db_xref="CGNC:5910"
                     /db_xref="GeneID:428253"
     CDS             191..2770
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /EC_number="2.7.11.1"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2"
                     /codon_start=1
                     /product="neural cell adhesion molecule 1 isoform 2
                     precursor"
                     /protein_id="NP_001229533.1"
                     /db_xref="CGNC:5910"
                     /db_xref="GeneID:428253"
                     /translation="MLPAAALPWTLFFLGAAASLQVDIVPSQGEISVGESKFFLCQVA
                     GEAKYKDISWFSPNGEKLTPNQQRISVVRNDDFSSTLTIYNANIDDAGIYKCVVSSVE
                     EGDSEATVNVKIFQKLMFKNAPTPQEFKEGDDAVIVCDVVSSLPPTIIWKHKGRDVIL
                     KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPSVRARQ
                     STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKK
                     VDKSDEAEYICIAENKAGEQDATIHLKVFAKPKITYVENKTAMELEDQITLTCEASGD
                     PIPSITWKTSTRNISNEEKASWTRPEKQETLDGRIVVRSHARVSSLTLKEIQYTDAGE
                     YVCTASNTIGQDSQAMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAVISWFR
                     DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESSEFILVQAD
                     TPSSPSIDRVEPYSSTARVEFDEPEATGGVPILKYKAEWRALGEGEWHSRLYDAKEAN
                     VEGTITISGLKPETTYSVRLSAVNGKGVGEISLPSDFKTQPVQGEPSAPKLEGQMGED
                     GNSIKVNVIKQDDGGSPIRHYLIKYKAKHSSEWKPEIRLPSGSDHVMLKSLDWNAEYE
                     VYVIAENQQGKSKPAHYAFRTSAQPTVIPASTSPTSGLGTAAIVGILIVIFVLLLVAV
                     DVTCYFLNKCGLLMCIAVNLCGKSGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEER
                     TPNHDGGKHTEPNETTPLTEPEKTPVEDKSEVQATETKTPPAEVKTVPNEATQTNENE
                     SKA"
     sig_peptide     191..247
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    644..658
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     Region: Heparin-binding. {ECO:0000255}"
     misc_feature    671..685
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     Region: Heparin-binding. {ECO:0000255}"
     misc_feature    2357..2410
                     /gene="NCAM1"
                     /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
                     transmembrane region"
ORIGIN      
        1 gtcacggcgg cggcgccggg aggcggccgg ggcgcagcgg gcggagcggg gacacgcgcg
       61 gagcggagcg gagcggcgcg aaggggacgc ggggcaaaaa cgggaagatc catccggagg
      121 gccgcgtggt gctccgcccg cacggaacgg ctatttcgga gcggcccctc tcgccccccc
      181 gccggctgcg atgctgcccg ccgccgcgct gccctggacg ttgttttttc tcggagccgc
      241 agcctctcta caagtggata ttgttccaag tcagggagag atcagcgttg gagaatccaa
      301 gttcttctta tgtcaagtgg caggggaagc caaatacaaa gacatttcct ggttttcccc
      361 taacggtgag aagctgacgc ccaaccaaca gcgcatctca gtggtgcgaa atgatgactt
      421 ctcctccacc ctcaccatct acaacgccaa cattgatgat gctggcatct ataaatgtgt
      481 tgtcagcagc gtggaggagg gagactctga agccaccgtc aatgtgaaaa ttttccaaaa
      541 gctcatgttc aagaatgccc ccactcctca ggaattcaag gaaggggatg atgctgtgat
      601 tgtgtgtgat gtggtcagct cgctgcctcc taccatcatc tggaaacaca aaggcaggga
      661 tgtcatccta aaaaaagatg ttcggtttat agtgctgtcc aacaactacc tgcagatccg
      721 gggaatcaag aaaacagatg aagggacgta ccgctgtgag ggccgcatcc tggctcgtgg
      781 ggagatcaac ttcaaagata ttcaggtcat tgtaaatgta cctccttctg tgcgtgccag
      841 gcagagcact atgaacgcca ctgccaacct cagccagtct gtcaccttag catgtgatgc
      901 tgatggcttt cctgagccaa ccatgacgtg gacaaaggat ggagagccaa tagagcagga
      961 ggataacgaa gagaaataca gttttaacta tgatgggtcc gagctgatca tcaagaaggt
     1021 ggataagagt gacgaagcag agtacatctg catcgctgag aacaaggctg gcgagcagga
     1081 tgccaccatt catctcaaag tctttgcaaa acccaaaatc acatatgtgg agaataaaac
     1141 agctatggag ctggaggatc agatcacact gacctgtgag gcctctgggg acccaatccc
     1201 ttccatcacg tggaaaactt ccacccggaa catcagcaat gaagagaagg cttcgtggac
     1261 ccggcccgag aaacaagaga ccctggatgg gcgcatcgtg gtgcgcagcc acgcgcgggt
     1321 atcgtccctg actctcaaag aaatccagta cacagacgcc ggagagtacg tgtgcacggc
     1381 cagcaacacc atcgggcagg actcacaggc catgtacctc gaagtgcagt atgctcccaa
     1441 gcttcagggc cctgtggctg tctatacctg ggaagggaat caagtgaaca tcacctgtga
     1501 ggtatttgct tatcccagtg ctgtcatctc ctggttccga gatggacagc tgcttcccag
     1561 ctcaaactac agcaacatca agatctacaa cactccatca gcaagctacc tggaggtgac
     1621 accagactct gaaaatgact ttggcaacta caactgcact gctgtgaacc gcattggcca
     1681 ggaatcctca gagttcattc ttgtgcaggc ggatactccg tcctctcctt ctattgacag
     1741 agtggagccc tactctagta ctgcccgtgt ggagttcgat gagcctgaag ctactggtgg
     1801 ggtgcccatc ctcaaataca aagcagagtg gagagcactg ggtgaaggag aatggcactc
     1861 aagattgtat gatgcaaaag aggcaaatgt ggagggcacg atcactatca gtggcctgaa
     1921 acctgagaca acctactcag tgagactgtc tgcagtcaat ggcaagggtg tgggtgagat
     1981 tagcctgcca tccgacttca agacacagcc agttcaaggg gaacccagtg cacccaaact
     2041 ggaagggcag atgggagaag acggaaactc catcaaagtg aacgttatca agcaggatga
     2101 tggtggctcc ccaatcaggc attacctgat caaatacaaa gctaaacatt cctcagaatg
     2161 gaaaccagag atcagactgc cttctggcag tgaccacgtc atgctcaagt ctctggactg
     2221 gaatgcagag tatgaggttt atgtgatagc tgaaaaccag caggggaagt ccaaacccgc
     2281 tcactacgct ttccggacat ctgctcagcc tactgtcatc ccagccagca ctagccctac
     2341 gtcaggcctg gggactgctg ccatcgtagg cattctcatt gttatctttg tgctgctcct
     2401 ggtggctgtg gacgtcacct gctacttcct gaacaaatgt ggcctgctca tgtgcattgc
     2461 tgtcaactta tgtggcaagt ctggaccagg agccaagggc aaagacatgg aggagggcaa
     2521 agctgccttc tcgaaagatg agtccaagga gcctattgtg gaagtgcgga ctgaagagga
     2581 gcggaccccc aaccatgatg ggggaaaaca cacagagccc aacgagacca ccccactaac
     2641 agaaccagag aaaaccccag tagaagacaa atctgaagtg caagcaacgg aaactaagac
     2701 acctccagca gaagtgaaga cggtccccaa cgaagccaca caaacaaatg agaatgagag
     2761 caaagcatga tcagcgacag atgaaaaacc atggcagaac gacttcaccc aagcatttac
     2821 aacacgaaac acaacacaca tctcattcct ctagtgtctg ttgccttttt tttaaaaaac
     2881 aaacaaacaa acaaaacaga aaatgcataa atggggaggg gggggttctc tctttttttc
     2941 tttttctttt tcttaagatt tttaggaagg ttctatttgt tgtgtacttg cttttaaaaa
     3001 gtaacacgtt ttaaaaacag ggttaaaccc atcaccagat cgggggctca gctgtcccct
     3061 ggtatgttca aacaagcaga attgcagaat accacttaga gcatcgctga ggagctcaga
     3121 gtcacccagt cgtagacgaa aggaaaaaaa gagaaaagaa aaaagaagac cctgttcttt
     3181 ccttggttag aatagtagat ttaaccactg tactgcttgc ctgcttggta caggcggtac
     3241 ttagtgaaca aagtccacaa tttattttta tacttttcag tcgagtttga aatatgtaaa
     3301 gcctcataaa taagttataa tttctgttca ccttgtgttc agtatgcaaa gtgtcgtgag
     3361 cattttgtgg ctgaattctg ttctcctcgt tagacattga ttttggggtt tattattttt
     3421 gttaggaaga atgccaaaat tgcagcttcg ggggatgtat ttcaatttgc agtattcaga
     3481 ctctacattt ctttaaattt tatgttaatt tttgccaact tttgttctct ccagtgttta
     3541 caattgacat ttttttaact tttgttgtgt ttaaatgtat ttgtaaaata gctgcctttt
     3601 ttttaaagta aatccagact ctagctacta ggttagcagc atgcttgctt tgcaaaggga
     3661 gacattttga aatatcgatg tttacagtag tttccccctt tatctttttt aattattatt
     3721 attattataa ttattattat tatttcttac tggagtaaga aaaaagagta atgctggtct
     3781 ttggtttgtt ttaggggggt ggggcgtggg gaatattcca accacttgtc accaatcgag
     3841 gtctgtatcc agcaatccac ataaacacac ttcactttga acgagagagt tgctggagag
     3901 agtttcctta tatacttaaa tttattaaga gtgtaagtcc cttgctggac ctgggcctga
     3961 atgcataaga aaaatatcat ctctgctttt ttaggacatt cttctctttc cttcatggaa
     4021 ccctcccaga gctttgagaa gcagaagagg gattgtacag ttagggctgg gctggtcttg
     4081 tctccactgt ttgactacat ccatttctct gtagaatgtt gataactgcc atttcctttg
     4141 accccagaaa ctgatttaaa agcaatgcct ttccgcactt aaataaagtt tccttttgag
     4201 gagtggtaac actaaaaaca gaacatcctg ctctcatgtg ggtgatgttc atgagcagag
     4261 ggtgcttggc agcatgcagg tgtccttact cattgcaggg aagttggact agatgaccct
     4321 taagggtccc ttccaaccca aacgattcta tgactctcca taagacccct tctgcaaagt
     4381 cagctccagc acattgtgtc tgataagtca tccgtgtatg ctttgcatca tccaggccat
     4441 gtatccatgg ctgagtgctt gggcatcagt gccaacgctc ccattgatgt ccctgctctt
     4501 ctcatcatgc ttttagcagt cagagaaagg ggctgatgtc acacatgcgt tgttgtggtc
     4561 gtcactggga gtcatggagt aacactgaga cttcagggtg ggaagaagag aaggttgagc
     4621 agcaggaagg cagaggaaga ccagcccatt gtatagaggt gctccttctc tgggggtttt
     4681 gctttgtttg tttttctttt attttccatt cttttttttt ttttttttct actttagatc
     4741 tgcaagcttg tgcactgtgg gtgcgtgact tttagtgtga aacgtgtttt ttgtcatagt
     4801 attgaaataa ttgaaaaaaa aaaaaagctt caacatagtt tggatgtgga aggtgtagcg
     4861 gataggtcag atttaaaata tatatattca ggaaaaaaaa aaagagaaca acttctagga
     4921 ggaacacaag cctttaaatg acaaacccga gctgatgatg gcatcattgc atcgcgccat
     4981 ggggacgagc agaagggtga tggggttggg gagatcatgc ttggctcggg tgaactgagc
     5041 cactatcgtt ggtgtgtcct tctgagtatg cagtctttta cagtggcatc acatgatttc
     5101 aaacagtgta aaacagtggt tttgtcattt gctaagtgtg gggtttttgc attttttcct
     5161 cagctcctgg ggatggaagt ggaggatggc tggctatgca ggcacagaca ctcaggcaat
     5221 accatcccag gcagaacagc agggcaggac aggttcccac ttgagagcct tgtgtcagat
     5281 tcagcccatg cttgacccat gacagcagcg ttgatgtaag taaggcgaaa tttggtccgt
     5341 ggtccctagg accttatata tcatgcctcc ccgagcagca acaggagcaa acgctgctca
     5401 gcgcagtgac ccggagtatg tccagtgcca ctgatcagca cccattgggt ggcactgtgg
     5461 tggctgtcac ccagactggt gtttctgcca tgtaaggcca ccagcccagg gccccatcca
     5521 gcacccggcc gtgtcacagt gcccggtacc tgctgggttg tgtcctgtgg atggagcctc
     5581 tgtgctgctc ccttagtgcc cctgtgacct ccccatcccc agaaccctta gattaatttt
     5641 ggagagtgtt tttatacttg cccttaatgg agaataattt gttttaactt ataaatatcc
     5701 cattcccaag gtagcttagg cttcattgct tttatttaaa cctttgaaga gggaccaacc
     5761 tgatgccgtt tgcgctgtat atgtttatat atgtatccat gccatacata tatatatcta
     5821 tatggcaact cagactgatc agcttctagt tgtggagtga catttcatgc tgcaccatac
     5881 gtaacgatga tgaggtaata gtgcatccag ttgttcagct tttagagtgg aattttattt
     5941 tcacactttt ctatggagcc ttcaaacccc aggttttcac actaggctgt tttgatagtt
     6001 gttctcagac ctccactgac atccttaccc agcattccct acttttgggg gccttctatc
     6061 ttgttaaaaa aacaaaaaaa caaaaaatct ttttaccgag tgaaacatca gttccacctt
     6121 tattcccatt ctcactggtg taaatactga tactaactga ggattttgac tttgcattct
     6181 gtcagaatac tgtgttcaaa taaaaattac aaaaaaaaaa taccaacaaa aa
//

LOCUS       NM_001004378            1139 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus receptor for activated C kinase 1 (RACK1), mRNA.
ACCESSION   NM_001004378 XM_415332
VERSION     NM_001004378.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Shiina T, Briles WE, Goto RM, Hosomichi K, Yanagiya K, Shimizu S,
            Inoko H and Miller MM.
  TITLE     Extended gene map reveals tripartite motif, C-type lectin, and Ig
            superfamily type genes within a subregion of the chicken MHC-B
            affecting infectious disease
  JOURNAL   J. Immunol. 178 (11), 7162-7172 (2007)
   PUBMED   17513765
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   3  (bases 1 to 1139)
  AUTHORS   Ruby T, Bed'Hom B, Wittzell H, Morin V, Oudin A and Zoorob R.
  TITLE     Characterisation of a cluster of TRIM-B30.2 genes in the chicken
            MHC B locus
  JOURNAL   Immunogenetics 57 (1-2), 116-128 (2005)
   PUBMED   15744538
REFERENCE   4  (bases 1 to 1139)
  AUTHORS   Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N and Klein
            J.
  TITLE     The phylogenetic relationship of tetrapod, coelacanth, and lungfish
            revealed by the sequences of forty-four nuclear genes
  JOURNAL   Mol. Biol. Evol. 21 (8), 1512-1524 (2004)
   PUBMED   15128875
REFERENCE   5  (bases 1 to 1139)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
REFERENCE   6  (bases 1 to 1139)
  AUTHORS   Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
            Korn B and Buerstedde JM.
  TITLE     A large database of chicken bursal ESTs as a resource for the
            analysis of vertebrate gene function
  JOURNAL   Genome Res. 10 (12), 2062-2069 (2000)
   PUBMED   11116100
REFERENCE   7  (bases 1 to 1139)
  AUTHORS   Guillemot F, Billault A and Auffray C.
  TITLE     Physical linkage of a guanine nucleotide-binding protein-related
            gene to the chicken major histocompatibility complex
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 86 (12), 4594-4598 (1989)
   PUBMED   2499885
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ392770.1, CB017418.1, BU137661.1, M24193.1, CK608329.1 and
            AADN04000554.1.
            On Apr 29, 2011 this sequence version replaced gi:52138658.
            
            Sequence Note: This RefSeq record was created from transcripts of
            different strains and genomic sequence data because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CN210840.1, CN210893.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-360               AJ392770.1         1-360
            361-635             CB017418.1         2-276
            636-863             BU137661.1         379-606
            864-959             M24193.1           844-939
            960-1128            CK608329.1         15-183              c
            1129-1139           AADN04000554.1     50867-50877         c
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="16"
                     /map="16"
                     /breed="Leghorn"
     gene            1..1139
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /note="receptor for activated C kinase 1"
                     /db_xref="CGNC:61"
                     /db_xref="GeneID:417044"
     misc_feature    40..42
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /note="upstream in-frame stop codon"
     CDS             103..1056
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /note="guanine nucleotide-binding protein subunit
                     beta-2-like 1; guanine nucleotide-binding protein beta
                     subunit 2-like 1; guanine nucleotide binding 12.3; Guanine
                     nucleotide-binding protein beta subunit2-like 1; guanine
                     nucleotide binding protein (G protein), beta polypeptide
                     2-like 1; receptor of activated protein kinase C 1;
                     guanine nucleotide-binding protein subunit beta-like
                     protein 12.3; MHC B complex protein 12.3"
                     /codon_start=1
                     /product="receptor of activated protein C kinase 1"
                     /protein_id="NP_001004378.1"
                     /db_xref="CGNC:61"
                     /db_xref="GeneID:417044"
                     /translation="MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK
                     LTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV
                     GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS
                     SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML
                     WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS
                     TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR"
     misc_feature    106..108
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N-acetylthreonine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P63247.1); acetylation site"
     misc_feature    139..234
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 1"
     misc_feature    283..375
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 2"
     misc_feature    409..501
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 3"
     misc_feature    538..636
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 4"
     misc_feature    670..762
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 5"
     misc_feature    784..786
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphotyrosine. {ECO:0000250}; propagated from
                     UniProtKB/Swiss-Prot (P63247.1); phosphorylation site"
     misc_feature    793..882
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 6"
     misc_feature    943..1035
                     /gene="RACK1"
                     /gene_synonym="C12-3; c12.3; GNB2L1"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
                     Region: WD 7"
ORIGIN      
        1 ccctctttct ctttccgcgc tggcggccat cgcgggcggt aggaccggac cgggccgggc
       61 cctttattga atccgccgcc atccctccgc cccgccgccg ccatgacgga gcagatgacc
      121 ctccgcggta ccctgaaggg ccacaatggg tgggtgacgc agatcgccac caccccgcag
      181 ttcccggaca tgattctctc cgcgtcgcgg gacaaaacca tcatcatgtg gaagctgacc
      241 cgagatgaga ccaactacgg gatcccgcag cgcgccctgc gcggccactc gcactttgtc
      301 agcgatgtgg tcatctcctc cgatgggcag tttgcgctgt cgggctcctg ggatggcacc
      361 ctgaggctgt gggacctcac cacaggaacc accacccgcc gctttgttgg ccacaccaag
      421 gatgtgctga gcgtcgcctt ctcctccgac aaccgccaga tcgtttcggg ctccagggac
      481 aaaaccatca aactctggaa cactttgggt gtctgcaaat acacggtgca ggacgagagc
      541 cactctgagt gggtttcctg tgtgcgcttc tcccccaaca gcagcaaccc catcattgtc
      601 tcctgtggct gggacaagct ggtgaaggtt tggaacttgg ctaactgcaa actgaagaca
      661 aaccacatcg gccacacggg atatctgaac acagtgactg tctcccctga tggctccctc
      721 tgtgcttctg gaggcaagga cggccaggcc atgctgtggg acctgaatga aggcaagcac
      781 ctgtacacgc tggatggagg ggacatcatc aatgcgctgt gcttcagccc caaccgctac
      841 tggctctgcg ctgccaccgg ccccagcatc aagatctggg acctggaagg caaaatcatt
      901 gtggatgagc tgaagcagga ggtgatcagc accagcagca aagctgagcc tccccagtgc
      961 acctctctgg cgtggtctgc agatgggcag acgctgtttg ctggctacac agataacctc
     1021 gtccgggtgt ggcaagtcac cattggaacc agatgaggat gtggtaaaaa cacacagatt
     1081 ttatgcacaa aactcaataa aagagcgctc tgttgagctc atggctgcat tatatccca
//

LOCUS       NM_001201399             548 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus defensin beta 4A (DEFB4A), transcript variant 2,
            mRNA.
ACCESSION   NM_001201399
VERSION     NM_001201399.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Cuperus T, Coorens M, van Dijk A and Haagsman HP.
  TITLE     Avian host defense peptides
  JOURNAL   Dev. Comp. Immunol. 41 (3), 352-369 (2013)
   PUBMED   23644014
  REMARK    Review article
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
            Lalmanach AC.
  TITLE     Differential modulation of beta-defensin gene expression by
            Salmonella Enteritidis in intestinal epithelial cells from
            resistant and susceptible chicken inbred lines
  JOURNAL   Dev. Comp. Immunol. 33 (9), 959-966 (2009)
   PUBMED   19539093
  REMARK    GeneRIF: intestinal epithelium express beta-defensin antimicrobial
            peptides that may play a role in immunoprotection against
            Salmonella Enteritidis.
REFERENCE   3  (bases 1 to 548)
  AUTHORS   Kannan L, Rath NC, Liyanage R and Lay JO Jr.
  TITLE     Direct screening identifies mature beta-defensin 2 in avian
            heterophils
  JOURNAL   Poult. Sci. 88 (2), 372-379 (2009)
   PUBMED   19151352
  REMARK    GeneRIF: peptides are 36 amino acids long including a highly
            conserved region with 6 invariant cysteines forming the 3 disulfide
            bonds characteristic of defensins
REFERENCE   4  (bases 1 to 548)
  AUTHORS   Ahanda ML, Ruby T, Wittzell H, Bed'Hom B, Chausse AM, Morin V,
            Oudin A, Chevalier C, Young JR and Zoorob R.
  TITLE     Non-coding RNAs revealed during identification of genes involved in
            chicken immune responses
  JOURNAL   Immunogenetics 61 (1), 55-70 (2009)
   PUBMED   19009289
REFERENCE   5  (bases 1 to 548)
  AUTHORS   Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
            Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
            Lehrer,R.I.
  TITLE     Avian beta-defensin nomenclature: a community proposed update
  JOURNAL   Immunol. Lett. 110 (1), 86-89 (2007)
   PUBMED   17467809
REFERENCE   6  (bases 1 to 548)
  AUTHORS   Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
  TITLE     Effects of age, egg-laying activity, and Salmonella-inoculation on
            the expressions of gallinacin mRNA in the vagina of the hen oviduct
  JOURNAL   J. Reprod. Dev. 52 (2), 211-218 (2006)
   PUBMED   16394622
  REMARK    GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
            laying hens increases with age but decreases in the regressed
            oviduct during the non-laying phase, and may increase in response
            to Salmonella enteritidis (SE) and lipopolysaccharide
REFERENCE   7  (bases 1 to 548)
  AUTHORS   Bar-Shira E and Friedman A.
  TITLE     Development and adaptations of innate immunity in the
            gastrointestinal tract of the newly hatched chick
  JOURNAL   Dev. Comp. Immunol. 30 (10), 930-941 (2006)
   PUBMED   16430960
  REMARK    GeneRIF: Authors use expression of beta-defensins GAL1 and GLA2 to
            postulate in situ maturation of heterophils in hatchling gut
            tissue.
REFERENCE   8  (bases 1 to 548)
  AUTHORS   Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
            Zhang G.
  TITLE     A genome-wide screen identifies a single beta-defensin gene cluster
            in the chicken: implications for the origin and evolution of
            mammalian defensins
  JOURNAL   BMC Genomics 5 (1), 56 (2004)
   PUBMED   15310403
  REMARK    GeneRIF: The chicken genome encodes only beta-defensins. The 13
            chicken beta-defensin genes are clustered densely within a 86-Kb
            distance on the chromosome 3q3.5-q3.7. The deduced peptides share
            the characteristic defensin motif.
            Publication Status: Online-Only
REFERENCE   9  (bases 1 to 548)
  AUTHORS   Brockus CW, Jackwood MW and Harmon BG.
  TITLE     Characterization of beta-defensin prepropeptide mRNA from chicken
            and turkey bone marrow
  JOURNAL   Anim. Genet. 29 (4), 283-289 (1998)
   PUBMED   9745666
REFERENCE   10 (bases 1 to 548)
  AUTHORS   Harwig SS, Swiderek KM, Kokryakov VN, Tan L, Lee TD, Panyutich EA,
            Aleshina GM, Shamova OV and Lehrer RI.
  TITLE     Gallinacins: cysteine-rich antimicrobial peptides of chicken
            leukocytes
  JOURNAL   FEBS Lett. 342 (3), 281-285 (1994)
   PUBMED   8150085
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF250963.1, AADN04000288.1, DQ858325.1 and AF033336.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcripts of
            different strains and genomic sequence data because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF250963.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201383, SAMEA2812691
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               CF250963.1         3-159
            158-158             AADN04000288.1     322558-322558       c
            159-200             CF250963.1         161-202
            201-201             DQ858325.1         50-50
            202-411             CF250963.1         204-413
            412-548             AF033336.1         287-423
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="xinghua"
     gene            1..548
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="defensin beta 4A"
                     /db_xref="CGNC:49507"
                     /db_xref="GeneID:395840"
     misc_feature    128..130
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="upstream in-frame stop codon"
     CDS             152..346
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="gallinacin-2; antimicrobial peptide 2;
                     beta-defensin 2 antimicrobial peptide; avian beta-defensin
                     2"
                     /codon_start=1
                     /product="gallinacin-2 precursor"
                     /protein_id="NP_001188328.1"
                     /db_xref="CGNC:49507"
                     /db_xref="GeneID:395840"
                     /translation="MRILYLLFSLLFLALQASPGLSSPRRDMLFCKGGSCHFGGCPSH
                     LIKVGSCFGFRSCCKWPWNA"
     sig_peptide     152..217
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     236..343
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /product="Gallinacin-2"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P46158.2)"
ORIGIN      
        1 aaagccctct ggagggaaga gaccaagagg tgttctggtt tggcttttgg gctcatctaa
       61 tatccgctca gaagactgta gattccaggg actgcctgcc acatacattt cttcttcctt
      121 ttccctgtag cagctcagca gatctgcagc catgaggatt ctttacctgc ttttctctct
      181 cctcttcctg gcactccagg cttctccagg gttgtcttcg ccccggcggg acatgctgtt
      241 ctgtaaagga gggtcctgcc actttggagg gtgtcccagc catctaatca aagtcggaag
      301 ctgcttcggg ttccgttcct gctgcaaatg gccttggaat gcataaacac ttcatgagtc
      361 cattcaagag ctttgaaaat ttcttccagg catgtgcttt aaatgctaca gcaaagcctc
      421 agcagcaaga agacccctct catgtgttaa tgcaatatgt tttgtgttgt agagtaaata
      481 caaatatctt ctgcactgcc tttcttcctc ttgaataaat tgtcattgca tagcaaaaaa
      541 aaaaaaaa
//

LOCUS       NM_204992                484 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus defensin beta 4A (DEFB4A), transcript variant 1,
            mRNA.
ACCESSION   NM_204992
VERSION     NM_204992.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Cuperus T, Coorens M, van Dijk A and Haagsman HP.
  TITLE     Avian host defense peptides
  JOURNAL   Dev. Comp. Immunol. 41 (3), 352-369 (2013)
   PUBMED   23644014
  REMARK    Review article
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
            Lalmanach AC.
  TITLE     Differential modulation of beta-defensin gene expression by
            Salmonella Enteritidis in intestinal epithelial cells from
            resistant and susceptible chicken inbred lines
  JOURNAL   Dev. Comp. Immunol. 33 (9), 959-966 (2009)
   PUBMED   19539093
  REMARK    GeneRIF: intestinal epithelium express beta-defensin antimicrobial
            peptides that may play a role in immunoprotection against
            Salmonella Enteritidis.
REFERENCE   3  (bases 1 to 484)
  AUTHORS   Kannan L, Rath NC, Liyanage R and Lay JO Jr.
  TITLE     Direct screening identifies mature beta-defensin 2 in avian
            heterophils
  JOURNAL   Poult. Sci. 88 (2), 372-379 (2009)
   PUBMED   19151352
  REMARK    GeneRIF: peptides are 36 amino acids long including a highly
            conserved region with 6 invariant cysteines forming the 3 disulfide
            bonds characteristic of defensins
REFERENCE   4  (bases 1 to 484)
  AUTHORS   Ahanda ML, Ruby T, Wittzell H, Bed'Hom B, Chausse AM, Morin V,
            Oudin A, Chevalier C, Young JR and Zoorob R.
  TITLE     Non-coding RNAs revealed during identification of genes involved in
            chicken immune responses
  JOURNAL   Immunogenetics 61 (1), 55-70 (2009)
   PUBMED   19009289
REFERENCE   5  (bases 1 to 484)
  AUTHORS   Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
            Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
            Lehrer,R.I.
  TITLE     Avian beta-defensin nomenclature: a community proposed update
  JOURNAL   Immunol. Lett. 110 (1), 86-89 (2007)
   PUBMED   17467809
REFERENCE   6  (bases 1 to 484)
  AUTHORS   Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
  TITLE     Effects of age, egg-laying activity, and Salmonella-inoculation on
            the expressions of gallinacin mRNA in the vagina of the hen oviduct
  JOURNAL   J. Reprod. Dev. 52 (2), 211-218 (2006)
   PUBMED   16394622
  REMARK    GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
            laying hens increases with age but decreases in the regressed
            oviduct during the non-laying phase, and may increase in response
            to Salmonella enteritidis (SE) and lipopolysaccharide
REFERENCE   7  (bases 1 to 484)
  AUTHORS   Bar-Shira E and Friedman A.
  TITLE     Development and adaptations of innate immunity in the
            gastrointestinal tract of the newly hatched chick
  JOURNAL   Dev. Comp. Immunol. 30 (10), 930-941 (2006)
   PUBMED   16430960
  REMARK    GeneRIF: Authors use expression of beta-defensins GAL1 and GLA2 to
            postulate in situ maturation of heterophils in hatchling gut
            tissue.
REFERENCE   8  (bases 1 to 484)
  AUTHORS   Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
            Zhang G.
  TITLE     A genome-wide screen identifies a single beta-defensin gene cluster
            in the chicken: implications for the origin and evolution of
            mammalian defensins
  JOURNAL   BMC Genomics 5 (1), 56 (2004)
   PUBMED   15310403
  REMARK    GeneRIF: The chicken genome encodes only beta-defensins. The 13
            chicken beta-defensin genes are clustered densely within a 86-Kb
            distance on the chromosome 3q3.5-q3.7. The deduced peptides share
            the characteristic defensin motif.
            Publication Status: Online-Only
REFERENCE   9  (bases 1 to 484)
  AUTHORS   Brockus CW, Jackwood MW and Harmon BG.
  TITLE     Characterization of beta-defensin prepropeptide mRNA from chicken
            and turkey bone marrow
  JOURNAL   Anim. Genet. 29 (4), 283-289 (1998)
   PUBMED   9745666
REFERENCE   10 (bases 1 to 484)
  AUTHORS   Harwig SS, Swiderek KM, Kokryakov VN, Tan L, Lee TD, Panyutich EA,
            Aleshina GM, Shamova OV and Lehrer RI.
  TITLE     Gallinacins: cysteine-rich antimicrobial peptides of chicken
            leukocytes
  JOURNAL   FEBS Lett. 342 (3), 281-285 (1994)
   PUBMED   8150085
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF250963.1, AF033336.1, DQ858325.1 and BQ484799.1.
            On Jan 19, 2011 this sequence version replaced gi:45384507.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcripts of
            different strains because no single transcript from the same strain
            was available for the full length of the gene. The extent of this
            transcript is supported by transcript alignments and orthologous
            data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ484799.1, BU449525.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                CF250963.1         3-62
            61-136              AF033336.1         1-76
            137-137             DQ858325.1         50-50
            138-299             AF033336.1         78-239
            300-300             BQ484799.1         281-281
            301-484             AF033336.1         240-423
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="xinghua"
     gene            1..484
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="defensin beta 4A"
                     /db_xref="CGNC:49507"
                     /db_xref="GeneID:395840"
     misc_feature    58..60
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="upstream in-frame stop codon"
     CDS             88..282
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /note="gallinacin-2; antimicrobial peptide 2;
                     beta-defensin 2 antimicrobial peptide; avian beta-defensin
                     2"
                     /codon_start=1
                     /product="gallinacin-2 precursor"
                     /protein_id="NP_990323.2"
                     /db_xref="CGNC:49507"
                     /db_xref="GeneID:395840"
                     /translation="MRILYLLFSLLFLALQASPGLSSPRRDMLFCKGGSCHFGGCPSH
                     LIKVGSCFGFRSCCKWPWNA"
     sig_peptide     88..153
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     172..279
                     /gene="DEFB4A"
                     /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
                     /product="Gallinacin-2"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P46158.2)"
ORIGIN      
        1 aaagccctct ggagggaaga gaccaagagg tgttctggtt tggcttttgg gctcatctaa
       61 tatccgcagc tcagcagatc tgcagccatg aggattcttt acctgctttt ctctctcctc
      121 ttcctggcac tccaggcttc tccagggttg tcttcgcccc ggcgggacat gctgttctgt
      181 aaaggagggt cctgccactt tggagggtgt cccagccatc taatcaaagt cggaagctgc
      241 ttcgggttcc gttcctgctg caaatggcct tggaatgcat aaacacttca tgagtccatt
      301 caagagcttt gaaaatttct tccaggcatg tgctttaaat gctacagcaa agcctcagca
      361 gcaagaagac ccctctcatg tgttaatgca atatgttttg tgttgtagag taaatacaaa
      421 tatcttctgc actgcctttc ttcctcttga ataaattgtc attgcatagc aaaaaaaaaa
      481 aaaa
//

LOCUS       NM_001199613             934 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus anterior gradient 3, protein disulphide isomerase
            family member (AGR3), mRNA.
ACCESSION   NM_001199613 XM_418699
VERSION     NM_001199613.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000095.1 and BU228146.1.
            On Dec 11, 2010 this sequence version replaced gi:118085898.
            
            Sequence Note: This RefSeq record was created from transcripts from
            different strains and genomic sequence data because no single
            transcript from the same strain was available for the full length
            of the gene. The extent of this transcript is supported by
            transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN03354478,
                              SAMN03354485 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               AADN04000095.1     235528-235633
            107-209             BU228146.1         16-118
            210-210             AADN04000095.1     238485-238485
            211-593             BU228146.1         120-502
            594-934             AADN04000095.1     241999-242339
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
                     /breed="Red Jungle Fowl"
     gene            1..934
                     /gene="AGR3"
                     /note="anterior gradient 3, protein disulphide isomerase
                     family member"
                     /db_xref="CGNC:13935"
                     /db_xref="GeneID:420597"
     CDS             1..498
                     /gene="AGR3"
                     /note="anterior gradient protein 3 homolog; anterior
                     gradient homolog 3"
                     /codon_start=1
                     /product="anterior gradient protein 3 precursor"
                     /protein_id="NP_001186542.1"
                     /db_xref="CGNC:13935"
                     /db_xref="GeneID:420597"
                     /translation="MLHSTLALSLLLIAVSSNLAMAIKKEKRTPQTLSRGWGDEITWV
                     QTYEEGLYQAKKSNKPLMVIHHLEDCQYCQALKKAFAENEEIQEMAQDNFIMLNLMHE
                     TTDKNLSPDGQYVPRIMFIDPSLTVRADITGRYSNRLYTYEPQDIPFLIENMKKALRL
                     IQTEL"
     sig_peptide     1..66
                     /gene="AGR3"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
ORIGIN      
        1 atgctccatt caacattggc cttgtctctc ctgctaattg cagtctcatc caacctcgct
       61 atggcaatca aaaaggaaaa aagaacacct cagacgctat caagaggctg gggagatgaa
      121 ataacctggg tacaaactta tgaagaaggg ctttatcaag caaaaaaaag taacaagcca
      181 ctgatggtca ttcatcattt ggaagactgt caatactgcc aagcactgaa gaaagctttt
      241 gctgaaaatg aagagataca agaaatggcg caagataact tcattatgct gaatctcatg
      301 catgaaacca cagataaaaa cctgtcacct gatggacaat acgtgcctcg aatcatgttc
      361 atagacccat ctctcacggt gagagctgat atcacaggaa gatactctaa tcggctgtac
      421 acttacgaac cacaagacat accattctta atagaaaaca tgaagaaagc acttcgcctc
      481 attcagacag aactgtaatc aacagtgaaa tgatcatagc ctctagaagg cgaagctgca
      541 ccaagaattc caacattcta aaatatttta tttagcctct ttctctgcta tctatttgaa
      601 ctcttaccaa gcaggtaaac cagatttcat gagaaagtta tatgtatgat ttgaagagga
      661 aatataggag actatcatta ccatttggga aacagagaag aaatctatca aacagtttga
      721 agcagagtca gctacctgaa taattgaaag tgatggttta aggtgcaagc aactttgagt
      781 tgtatattat caattgaact gtagctttat tgtcagctac aacttccaat caagagctat
      841 agccaatact tcatgtctat ttacaataca tgatgtaagt tattagctac atcttacctc
      901 ctatttttta tttcatgtag cttgtaaatc ttta
//

LOCUS       NM_001199429            2333 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus nephrocystin 1 (NPHP1), mRNA.
ACCESSION   NM_001199429 XM_419298
VERSION     NM_001199429.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CN384177.1, AADN04000266.1, BU374887.1, BX935485.2, BX931832.2,
            BU434903.1 and BX271340.3.
            On Dec 9, 2010 this sequence version replaced gi:118087540.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMEA2201357,
                              SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                CN384177.1         1-30
            31-133              AADN04000266.1     617897-617999       c
            134-524             CN384177.1         134-524
            525-702             BU374887.1         104-281
            703-929             BX935485.2         1-227
            930-938             BX931832.2         510-518
            939-2132            BX935485.2         237-1430
            2133-2308           BU434903.1         498-673
            2309-2333           BX271340.3         583-607
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Leghorn"
     gene            1..2333
                     /gene="NPHP1"
                     /gene_synonym="nephrocystin-1"
                     /note="nephrocystin 1"
                     /db_xref="CGNC:6212"
                     /db_xref="GeneID:421223"
     misc_feature    50..52
                     /gene="NPHP1"
                     /gene_synonym="nephrocystin-1"
                     /note="upstream in-frame stop codon"
     CDS             179..2224
                     /gene="NPHP1"
                     /gene_synonym="nephrocystin-1"
                     /note="nephronophthisis 1 (juvenile)"
                     /codon_start=1
                     /product="nephrocystin-1"
                     /protein_id="NP_001186358.1"
                     /db_xref="CGNC:6212"
                     /db_xref="GeneID:421223"
                     /translation="MTGRRARSPLQRVQRQSRELRAQVEALRGEGADAAVGRRAALRQ
                     RCFQLQKLVDENINTLHSLKKADEPAPVGNYNQRKEEEEKLLLKLSQQLQKFCHILDQ
                     DNVATNDTVSEGRQKDPQREDKVKEEAESADDNGESSEEGESEETDEEDEDKLLDDPD
                     VKECIAVGNFNAQQDGDLTFTKGEVLLIHDKKADGWWVAENSKGERGLVPRTYLAVHN
                     EDEENQEESDEHIEVVDETADGTEIRKRTDSHWSAVRKAITESDTVEILATMGAVPTG
                     FRLSTLSQLLEEGNQFRASYFLQPKLTPSQLAFKDLVWDSEKNTICPIPTRVSLIVTL
                     CSCKTIPLPAASIQVLSRHVRLCLFDGNRVLSNIHTVRATWQPKNPQMWTFSPRVTGI
                     LPSLLDGDCFVRSNSLSSDIGLLLELGITYIRNSTGERRELSCGWAFQKLFTSDGMPV
                     PSKMYELLLNGGTPYERGVEVDPSLSRRAGSGVFHQLISLKKQPVLVVKLRSLSTQSK
                     DILNLLPETLIGSMCYIHLLIFYRQILGDALLRDRINMQSAELICNPILATFPQLVDQ
                     PDLMDALRSAWADRERTLKRSEKRDREFLKSVFILVYHDSAFPLLRSTLLPSYKWAEE
                     ESEASRWRVIADFLRKSQEKDGALQSLLSAENTHTAFDISELAYDFLGETRKNNPTV"
ORIGIN      
        1 accgcgcggg ggtgaccgag cagcgcgctg gcggcacgaa cgggagcatt aaatcagtgc
       61 ttgtacgttg ggctcgcagc gtgtttctac accccgcccg cacaccgggc tcgggcccag
      121 agcgcgcggg ctcccggaag tgacgtcatt tccgagcgcc gcccgttgcc tagcgaccat
      181 gacggggcgg cgggcgcgca gcccgctgca gcgagtgcag cgacagagcc gggagctgcg
      241 ggcacaggtg gaagcgctgc ggggagaggg cgcggacgca gccgtcgggc ggcgagcggc
      301 cctgaggcag agatgttttc agctgcagaa actggtggat gagaatataa atactcttca
      361 tagtttgaaa aaagctgacg agcctgcacc tgtggggaac tataatcaga ggaaagaaga
      421 agaagaaaag ctattgctaa agttgtccca gcagctgcag aaattttgtc atatcttgga
      481 tcaggataat gtggctacaa atgacacagt gagcgaggga cgtcagaaag atcctcaaag
      541 agaagacaaa gttaaagaag aggctgagag tgctgatgac aatggagaaa gcagtgagga
      601 aggagaaagt gaagaaacag atgaggaaga tgaggataaa ttgttggatg atcctgatgt
      661 taaagaatgc attgcagtgg gaaactttaa tgcacagcag gacggggatc tcacatttac
      721 gaaaggtgaa gtcctgctta tacatgataa gaaggcggat ggctggtggg tagccgagaa
      781 ctcaaaaggg gagagaggcc tcgtgcctag aacctatctt gcggtccata atgaagatga
      841 agaaaaccaa gaggaaagtg atgaacacat agaagtggtg gatgaaacag cagatggtac
      901 tgaaattaga aaaagaacag actctcactg gagcgctgta agaaaagcta tcaccgagag
      961 tgacacagta gagatattgg caaccatggg agctgttcct acaggattcc gtctatccac
     1021 actttcccag ctcttagaag aaggtaatca gttcagagca agttacttct tgcagcctaa
     1081 acttactcca tcccagctgg cttttaaaga tttggtgtgg gactctgaaa aaaatactat
     1141 ctgtcctata ccaactcgag tatccctgat tgtaactcta tgtagctgta aaacgattcc
     1201 tctcccagca gccagtattc aggttctcag tagacacgtt cgactctgtc tattcgatgg
     1261 caatcgggta ctgagtaaca ttcatacagt gagagctacg tggcaaccta aaaaccctca
     1321 aatgtggacc ttttctccaa gggtaacagg cattttaccc agcttactgg atggtgactg
     1381 ctttgtcagg tccaattcct tatcttcaga cattggttta ctacttgaac ttggcatcac
     1441 ttacattcgc aactcaacag gtgaacgacg agagctaagc tgtggctggg catttcagaa
     1501 gctttttact tctgatggaa tgcctgttcc ttccaaaatg tatgagctgc tattaaatgg
     1561 tggtactcct tatgagagag gtgttgaggt tgacccatca ctatcaagga gagcaggcag
     1621 tggtgttttt catcagctta tatcactcaa gaagcagcca gtgcttgtag tgaaactgag
     1681 gtcattaagc acacagtcaa aggacatcct gaatttgtta ccagaaacat taattggcag
     1741 tatgtgctac atccatctct tgatatttta tcgacaaata cttggtgatg cactcctgag
     1801 agacagaata aacatgcaaa gtgcagaatt aatctgtaat cctattttag caacttttcc
     1861 tcaactcgtg gatcagccag acctgatgga tgcactgcgg agtgcttggg cggacagaga
     1921 aagaactttg aagagatcag aaaagagaga tcgagaattc ctgaagtctg tgttcatcct
     1981 ggtgtaccat gactcagcct tccctctcct ccggtccact ttgctcccca gctacaagtg
     2041 ggcagaggag gagtccgaag cgtctcgctg gagagtgatt gctgacttcc tgagaaagag
     2101 ccaagagaaa gatggtgccc ttcagtctct gctgtccgca gaaaacactc acacagcctt
     2161 tgacatctca gagctggcct atgatttctt gggagaaacg aggaaaaata atcccacagt
     2221 atgaatggat tgtaggataa caatatagat aaatttttac caaagagaaa ttatgtgtac
     2281 tgtctgaatt gcaagaaata ttttcacaca ttaaaaataa cattttgagg gag
//

LOCUS       NM_001195561             781 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus prolyl-tRNA synthetase associated domain containing
            1, pseudogene (PRORSD1P), mRNA.
ACCESSION   NM_001195561 XM_419287
VERSION     NM_001195561.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000361.1.
            On Sep 17, 2010 this sequence version replaced gi:118087490.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX929534.2, BU227122.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201357, SAMEA2201358
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               AADN04000361.1     689096-689197       c
            103-781             AADN04000361.1     688074-688752       c
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
                     /breed="Red Jungle Fowl"
     gene            1..781
                     /gene="PRORSD1P"
                     /gene_synonym="PRORSD1"
                     /note="prolyl-tRNA synthetase associated domain containing
                     1, pseudogene"
                     /db_xref="CGNC:51437"
                     /db_xref="GeneID:421212"
     CDS             16..540
                     /gene="PRORSD1P"
                     /gene_synonym="PRORSD1"
                     /codon_start=1
                     /product="PrdX-deacylase domain 1"
                     /protein_id="NP_001182490.1"
                     /db_xref="CGNC:51437"
                     /db_xref="GeneID:421212"
                     /translation="MAAAPGLREALEQRLRDLGIAATTTEHPEVFTVEEMMAHVQHLK
                     GGHSKNLFLKDKKRKEFWLVTVLHDRQVDLNHLAKKLGVGSGNLRFADENAMLEKLQV
                     GQGCATPLALFCDHGDVRLVLDAGFLEGGHEKVYFHPMTNGATMGLSPEDFLKFVKST
                     GHDPIVVHFDEDIK"
ORIGIN      
        1 cgggaaagtg gtggcatggc ggcggcgccg gggctgcggg aggcgctgga gcagcggttg
       61 cgggatttgg gcatcgctgc caccaccacg gagcacccgg aggtgttcac ggttgaagaa
      121 atgatggccc acgtccaaca cttgaaagga gggcacagta aaaacctttt ccttaaagac
      181 aaaaagagga aagagttctg gctggtgact gtcctgcacg acaggcaggt ggatttaaac
      241 catctggcaa aaaaacttgg cgttggaagt ggaaacctga gatttgctga tgaaaacgcc
      301 atgctggaga agctccaggt gggccaaggc tgtgccacac cgctggctct gttctgtgac
      361 cacggagatg tgaggttggt gctggatgcc ggcttcctgg agggcggcca tgaaaaggtg
      421 tattttcatc caatgacaaa tggtgcgacc atgggcttaa gccctgagga cttcctgaag
      481 tttgtgaaat cgacaggcca cgatccaatc gtcgtgcatt ttgatgaaga cattaaatag
      541 ggtcacatgg ctcggtgttg atgttatagc gcaaaactgg tgggagtctc gtgataaata
      601 cagcttggaa gaacagggct gctcttttgt acagtgtaac atttagtgta agaaaatact
      661 acacttgggt tactgaaaat tcaacagaat attcttgaga agatgtctgc aatctgccag
      721 catccagcat gatgaaaagg cattatataa ataataatat gttaataaaa tgcataaagt
      781 g
//

LOCUS       NM_001195424            3105 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus ubiquitin conjugating enzyme E2 E3 (UBE2E3), mRNA.
ACCESSION   NM_001195424 XM_421975
VERSION     NM_001195424.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3105)
  AUTHORS   Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
            Burnside J, Aggrey SE, Simon J and Cogburn LA.
  TITLE     Chicken genomics resource: sequencing and annotation of 35,407 ESTs
            from single and multiple tissue cDNA libraries and CAP3 assembly of
            a chicken gene index
  JOURNAL   Physiol. Genomics 25 (3), 514-524 (2006)
   PUBMED   16554550
REFERENCE   2  (bases 1 to 3105)
  AUTHORS   Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
            WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
  TITLE     A comprehensive collection of chicken cDNAs
  JOURNAL   Curr. Biol. 12 (22), 1965-1969 (2002)
   PUBMED   12445392
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AADN04000048.1, CD217623.1, BU110886.1 and DR431499.1.
            On Sep 10, 2010 this sequence version replaced gi:118093495.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU442557.1, BU365019.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201366 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 AADN04000048.1     6785597-6785600     c
            5-267               CD217623.1         129-391
            268-691             BU110886.1         173-596
            692-3088            AADN04000048.1     6730619-6733015     c
            3089-3105           DR431499.1         3-19                c
FEATURES             Location/Qualifiers
     source          1..3105
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="7"
                     /map="7"
                     /breed="Red Jungle Fowl"
     gene            1..3105
                     /gene="UBE2E3"
                     /gene_synonym="yeast)"
                     /note="ubiquitin conjugating enzyme E2 E3"
                     /db_xref="CGNC:14325"
                     /db_xref="GeneID:424122"
     CDS             13..636
                     /gene="UBE2E3"
                     /gene_synonym="yeast)"
                     /EC_number="6.3.2.19"
                     /note="ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog,
                     yeast)"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 E3"
                     /protein_id="NP_001182353.1"
                     /db_xref="CGNC:14325"
                     /db_xref="GeneID:424122"
                     /translation="MSSDRQRSDDESPSTSSGSSDADQRDPPAPEPEEQEERKPSATQ
                     QKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPG
                     SVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTIS
                     KVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT"
     STS             839..1133
                     /gene="UBE2E3"
                     /gene_synonym="yeast)"
                     /standard_name="T03564"
                     /db_xref="UniSTS:72354"
ORIGIN      
        1 aagttcccca cgatgtccag tgacaggcag aggtcggacg atgagagccc cagtaccagc
       61 agcggcagct cagacgccga ccagagggac cccccggcac ctgaacctga ggagcaggag
      121 gaaaggaaac cctctgccac ccaacagaag aagaacacca aactctccag caaaactact
      181 gctaagctat ctactagtgc taaaagaatc cagaaggagc tagctgaaat aactcttgat
      241 cctcctccta actgcagtgc cggccctaaa ggagataaca tttatgaatg gagatcaact
      301 atacttggac ctccgggttc tgtatatgag gggggcgttt ttttcctgga tatcacattt
      361 tcatctgact atccattcaa gccaccaaag gttactttcc gcaccagaat ttatcactgc
      421 aacatcaaca gtcagggagt catctgtctg gatatcctga aggacaactg gagccctgct
      481 ttgactattt caaaggtcct gctgtctatt tgttctcttt tgacagactg caacccggct
      541 gatcctctgg ttggaagcat agccactcag tatctgacca acagagcaga acatgacagg
      601 atagccagac agtggaccaa gagatatgca acataaacaa caaactactt gtgcagtgtg
      661 aaggtgcaga aggcaacttt acagtgtgca acaaatcttt atagccttta caatacggac
      721 ttctgtgtat atgttatact gattctactc tgcttttatc cttttgaaga ctgggatact
      781 gcctcccaaa aaggtaaatg ctatcaagag tagaaatttg tagctgtaga ttagttatgt
      841 ttaaaatgcc tacttgcaag tcttgcttct ttgggatatc aaaatgtatt ttgtgatgta
      901 ctaaggatac tgttcctgaa gtcaaccaaa tattatagtg cattttagcc taattcatta
      961 tctgtatgaa gttattaaag gtagctgtag attactagga attatgtcat ttgtattaaa
     1021 cccagatcta tttccaatat gtggtacatg ctgttgtgga aactgtttta acttttacct
     1081 ttgtcagttt gtaatgaaag gatttccttt ttccctttgt agctcagaga gcacccagtg
     1141 tatcatctca aacacaataa acatgttccc caaggagtag tttctttgtt ttcctatttt
     1201 aaattaatat ttgaaaaaat ttaattatag taacaaggca gggctaatgt atcacagatc
     1261 cctgtggata atctttaaat taatatacat aagcaaaggc ttgctattaa atgtttaatg
     1321 cacacctgtg gattgtgtaa gttttccctg ggttttttgg tttgatttgg ttttattttt
     1381 acagaacaaa tgccattccc atattttcct taactgctca gctctttttc aagttgcaat
     1441 gagagcaccg catatgcttc ctccaaaagc taatgtagct ggttgcttca gggccagacc
     1501 tgttcttgta atagatggcc tggtcttgct acaaactcct ttttgcagga ccagagccca
     1561 gttacagata gtctggtgct tttgtgtcag agtaaagcaa gtcaggcttg ctaatctgga
     1621 gaaccacagt tgtccactga aaatggtctt ccaaagcatg gttaaacact agtctgtcca
     1681 gaagagaaag gagtagaata aacttcatca gatttttatg acagaaaaaa accagttgtg
     1741 ggggaaatta acctttgtta ctgaaaatgc aagatgtaaa acttttagac tacttttccc
     1801 cctcacctct tcactttctg gcgtggaaat ttttgtaaca tctgtaagta atgaagatgc
     1861 agctttatag cacatacagt ggaatcacca atagttttat aattcagctt ttgtaggttg
     1921 ccagtcacac catcgattat acaaaaagag atttgatccc tttaaatgat ttttaaaatt
     1981 acacctgatt ttcaagttta ctgtcccctt tactacctgg tgtttttgga gataatgtag
     2041 cacttccatc agtaggatgc tctgctcact taatatatga aaaatgaatg ttaagtttaa
     2101 ataataaagc aatagaaaaa atgttaaaga ttaaatctaa agttagccat cactatatag
     2161 atccctgttt tttgtatcac aacctttgat catgaattgt ccaccctact ttaaatattt
     2221 ctacagattc ctgaaggtgg cttgaagaac tgcgtatccc aaatatctca acctagaagc
     2281 cagtctctct tggtagctac aagatagctt tagacttcag gttataaagt gcaaaaggga
     2341 atgagaaaca ggggatctgg caggtgaata tgcctaagtc gggtaacaga ctaatgccag
     2401 gaaatgaagt gctggaaatc actgctgatg gtgaccagag tttctcattg tgtcgttgaa
     2461 catgtgagaa atagcacaga ttggcaaagc aacaaggggc tatcgcatcc gggctggaca
     2521 tctacggtct gctcactgct gtccagtagt gcactgctgt gctgcgcagt gctcgtacac
     2581 cactccggtg actttccagt gaagagcaaa ctatgtattt catgtgttaa ttatgttgcc
     2641 tacagaattt acagatattt atatcatgaa ataatatggt ataaagaaag acaggtttta
     2701 attctaattt taatgtattt tgtttttgta ttgtactgac aacttcatct actgaggtgt
     2761 acaaatgtga tgcctcgtca gtgttgcccc atcttgcctt ccttgcaatt ggatccttta
     2821 cactgaattc tcatcctttt tcttctcttt tttttccttt ctttctttct ttcttttttt
     2881 ttttttttgt tgttgttggt ttgtcatcat tctgttcttt tttaatgtag tttttttgtg
     2941 tgtaaatttt atatttactg aagtaaaggt tgtttttgtg taaacattta aactttaaga
     3001 aagaaaaaag aaaagctaat tttgtttctc aagttctctc tgctaaaaca tgcagtagaa
     3061 agaaatttgt attgttaaat aaatcaatta gttgttaaat gcgaa
//

LOCUS       NM_001111014            4041 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus glutamate ionotropic receptor AMPA type subunit 2
            (GRIA2), transcript variant 2, mRNA.
ACCESSION   NM_001111014
VERSION     NM_001111014.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4041)
  AUTHORS   Yoon YJ, White SL, Ni X, Gokin AP and Martin-Caraballo M.
  TITLE     Downregulation of GluA2 AMPA receptor subunits reduces the
            dendritic arborization of developing spinal motoneurons
  JOURNAL   PLoS ONE 7 (11), E49879 (2012)
   PUBMED   23226228
  REMARK    GeneRIF: Increased GluA2 expression and changes in the Ca(2+)
            permeability of AMPA receptors regulate the dendritic arborization
            of spinal cord motoneurons during embryonic development.
REFERENCE   2  (bases 1 to 4041)
  AUTHORS   Ni X, Sullivan GJ and Martin-Caraballo M.
  TITLE     Developmental characteristics of AMPA receptors in chick lumbar
            motoneurons
  JOURNAL   Dev Neurobiol 67 (11), 1419-1432 (2007)
   PUBMED   17497695
  REMARK    GeneRIF: These findings raise the possibility that Ca2+ influx
            through Ca(2+)-permeable AMPA receptors plays an important role
            during early embryonic development in chick spinal motoneurons.
REFERENCE   3  (bases 1 to 4041)
  AUTHORS   Migues PV, Cammarota M, Kavanagh J, Atkinson R, Powis DA and Rostas
            JA.
  TITLE     Maturational changes in the subunit composition of AMPA receptors
            and the functional consequences of their activation in chicken
            forebrain
  JOURNAL   Dev. Neurosci. 29 (3), 232-240 (2007)
   PUBMED   17047319
  REMARK    GeneRIF: Ca(2+) uptake in response to AMPA receptor activation
            decreases dramatically during maturation in chicken brain
            microslices without a change in tissue AMPA receptor content
REFERENCE   4  (bases 1 to 4041)
  AUTHORS   Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
            HS, Cho BW and Han JY.
  TITLE     Analysis of chicken embryonic gonad expressed sequenced tags
  JOURNAL   Anim. Genet. 37 (1), 85-86 (2006)
   PUBMED   16441308
REFERENCE   5  (bases 1 to 4041)
  AUTHORS   Mendieta J, Gago F and Ramirez G.
  TITLE     Binding of 5'-GMP to the GluR2 AMPA receptor: insight from targeted
            molecular dynamics simulations
  JOURNAL   Biochemistry 44 (44), 14470-14476 (2005)
   PUBMED   16262247
  REMARK    GeneRIF: Results show that 5'GMP appears to be a false agonist
            rather than a competitive antagonist of the GluR2 receptor.
REFERENCE   6  (bases 1 to 4041)
  AUTHORS   Aruscavage PJ and Bass BL.
  TITLE     A phylogenetic analysis reveals an unusual sequence conservation
            within introns involved in RNA editing
  JOURNAL   RNA 6 (2), 257-269 (2000)
   PUBMED   10688364
REFERENCE   7  (bases 1 to 4041)
  AUTHORS   Ravindranathan A, Parks TN and Rao MS.
  TITLE     Flip and flop isoforms of chick brain AMPA receptor subunits:
            cloning and analysis of expression patterns
  JOURNAL   Neuroreport 7 (15-17), 2707-2711 (1996)
   PUBMED   8981452
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            X89508.1, U59706.1, CV862778.1, CR385667.1, DR431149.1 and
            CR353879.1.
            On Jun 4, 2010 this sequence version replaced gi:161377424.
            
            Transcript Variant: This variant (2) uses an alternate exon in the
            3' coding region compared to transcript variant 1, and encodes an
            isoform (2, also known as flop isoform) that is the same length as
            isoform 1, but with few amino acid differences. RNA editing
            (CAG->CGG) changes Gln607Arg.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201363,
                              SAMEA2201366 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            undergoes RNA editing :: PMID: 10688364
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2504              X89508.1           1-2504
            2505-2793           U59706.1           415-703
            2794-2880           X89508.1           2794-2880
            2881-3398           CV862778.1         172-689
            3399-3744           CR385667.1         444-789
            3745-3882           DR431149.1         710-847
            3883-4041           CR353879.1         112-270
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
                     /breed="Leghorn"
     gene            1..4041
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="glutamate ionotropic receptor AMPA type subunit 2"
                     /db_xref="CGNC:7152"
                     /db_xref="GeneID:414894"
     CDS             216..2867
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; AMPA glutamate receptor 2; AMPA receptor
                     GluR2/B; glutamate receptor B flip isoform; glutamate
                     receptor, ionotropic, AMPA 2"
                     /codon_start=1
                     /product="glutamate receptor 2 isoform 2 precursor"
                     /protein_id="NP_001104484.1"
                     /db_xref="CGNC:7152"
                     /db_xref="GeneID:414894"
                     /translation="MQKIMHISVCLAPVLWGLIWGAHSNSIQIGGLFPRGADQEYSAF
                     RVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKKSVNTITS
                     FCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWTKFAYLYDSDRGLST
                     LQAVLDSAAEKKWQVTAINVGNINNDRKDETYRSLFQDLEVKKERRVILDCERDKVND
                     IVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSGFQIVDYDDPLVSKFIQR
                     WSTLEEKEYPGAHTSTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANP
                     AVPWGHGVEIERALKQVQVEGLTGNIKFDQNGKRINFTINVMELKSTGPRKIGYWSEV
                     DKMVVNPLDGPLGNESSGLENKTIIVTTILESPYVMMKKNHEMLEGNDRYEGYCVDLA
                     TEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREE
                     VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR
                     FSPYEWHTEEFEDGRETQTNESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGG
                     VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR
                     SKIAVFDKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD
                     TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGG
                     GDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNIN
                     PTSSQNSQNFATYKEGYNVYGIESVKI"
     sig_peptide     216..278
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
     mat_peptide     279..2864
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /product="glutamate receptor 2 isoform 2"
     misc_feature    2035
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="RNA editing at nt 2035 (CAG->CGG) changes
                     Gln607Arg; Region: RNA editing site"
     STS             2869..3118
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /standard_name="SHGC-67298"
                     /db_xref="UniSTS:89435"
ORIGIN      
        1 agagcggcgg aggcagctcg ggaacggtgt ctcccgctcg cggtgcccgg cctcggcctc
       61 gcctccctgc ccagggtctg ctcgcagccc ccggccgctc gaccggcgtg cggaggatcg
      121 aattcggcgg cggcggagga aggaaggaaa gaaagaagga aggaagaaag aagcgccgtt
      181 tctgtggctt tgtggatgct ctccttttcc tggaaatgca aaagattatg catatttctg
      241 tctgcctggc tcccgtgttg tggggactga tctggggggc ccattccaac agcatacaga
      301 tcggggggct gttcccgagg ggcgccgacc aggagtacag cgcgttccgg gtgggcatgg
      361 tgcagttctc cacctccgag ttcaggctca ctccccacat cgacaacctg gaggttgcca
      421 acagcttcgc cgtcaccaac gccttctgct cccagttttc cagaggagtc tttgctattt
      481 ttggattcta tgataagaag tctgtaaaca ccataacatc cttctgtggg actcttcatg
      541 tctccttcat aactccgagc ttcccgacag atggaacaca cccatttgtc attcagatga
      601 gacctgacct caagggagct ctccttagtt tgattgaata ctatcagtgg accaagtttg
      661 catatttata tgacagcgac agagggttat caacattgca agctgtgctg gattctgcag
      721 ctgaaaagaa gtggcaagtg actgctatca atgtaggaaa tattaacaat gacagaaaag
      781 atgaaaccta ccgttctcta tttcaagatc tagaagtgaa aaaggaaagg agagtgattt
      841 tggactgtga gcgtgataaa gtcaacgaca ttgttgatca ggtcatcaca attggtaaac
      901 atgttaaagg ataccattat attattgcaa atctgggatt tactgatgga gatttatcca
      961 aaattcagtt tggaggagct aatgtctcag gatttcagat agttgactat gatgatcctt
     1021 tggtgtcaaa atttatacaa cgttggtcaa cactggagga aaaagaatat cctggtgcac
     1081 acactagtac aataaagtat acatctgctc tgacctatga tgctgtgcaa gtgatgacag
     1141 aagctttccg taatttgcgt aaacagagga ttgagatctc cagaagagga aatgctggag
     1201 attgtcttgc aaatccagct gtaccctggg gtcatggtgt agaaatagaa agggcattga
     1261 aacaggttca ggtggaaggt ctaacaggga atataaagtt tgatcagaat ggaaagagaa
     1321 tcaattttac gataaatgtc atggaactca aaagtactgg ccctcggaag attggatatt
     1381 ggagtgaagt ggacaaaatg gttgtgaatc cacttgatgg ccctcttgga aatgaatctt
     1441 caggactaga aaataagact attattgtca ccactatttt ggagtcccca tatgttatga
     1501 tgaagaaaaa tcatgaaatg cttgaaggaa atgatcgata tgagggctat tgtgtggacc
     1561 tagctacaga aattgctaag cactgtggat tcaaatataa gctcacaatt gttggggatg
     1621 gcaagtatgg ggcaagggat gcagatacga aaatatggaa tgggatggtt ggagaacttg
     1681 tttatgggaa agctgatatt gcaattgctc cattaactat aacattggtg agagaagagg
     1741 tgattgactt ctcaaagccc tttatgagcc tggggatatc aataatgatc aagaaacctc
     1801 agaagtccaa gccaggagtg ttttcatttc ttgatccatt agcatatgaa atctggatgt
     1861 gcattgtttt tgcctacatt ggggtcagtg tagttttatt cctggtcagc agatttagtc
     1921 cgtacgagtg gcacacagag gaatttgaag atggaagaga aacacagact aatgaatcaa
     1981 ctaatgagtt tgggatattt aatagtctct ggttttccct gggtgccttt atgcggcaag
     2041 gatgcgatat ttcgccaaga tccctgtctg ggcgcattgt tggaggtgtg tggtggttct
     2101 ttaccctcat cataatctca tcctacacgg ctaacttagc tgccttcctg acggttgaga
     2161 ggatggtgtc tcccattgaa agtgcagagg atctttccaa gcaaacagaa attgcatatg
     2221 ggacattaga ttctggctcc actaaagagt tttttaggag atctaaaatt gcagtgtttg
     2281 ataaaatgtg gacctatatg aaaagtgcag agccatctgt gtttgtgagg actacagcag
     2341 aaggggtagc tcgagtacgg aagtccaaag gaaaatatgc ctacttgttg gagtcaacca
     2401 tgaatgagta catcgaacaa aggaaaccct gtgataccat gaaagttggt gggaatttgg
     2461 attccaaagg ctacggcatc gccacaccta aaggatcctc attaagaaat gcggttaacc
     2521 tcgcagtact aaaactgaat gaacaaggcc tgttggacaa attgaaaaac aaatggtggt
     2581 acgacaaagg agagtgcggc agcgggggag gtgattccaa ggagaagacc agtgccctca
     2641 gtctgagcaa cgtggcagga gtcttctata ttctcgtcgg gggacttggc ttggcaatgc
     2701 tggtggcttt gattgagttc tgttacaagt cgagagctga ggcgaagaga atgaaggtgg
     2761 caaagaacgc acagaatatt aacccaactt cctcacagaa ttcacagaat tttgcaactt
     2821 ataaggaagg ttacaacgta tatggaatcg aaagtgttaa aatttagggg atgaccttga
     2881 atgatgccat gaggagcaag gcaaggctgt cgatttcagg aagtactgga gaaaatggac
     2941 atgttatggc tccagaattt ccaaaagcag tgcatgcagt accttatgtg agtcctggca
     3001 tgagaatgaa tgtcagtgtg actgatctct cgtgattgat aagaaccttt tgagtgcctt
     3061 acacaatggt tttcttgtgc gtttattgtc aaagtggtga gaggcatcca gtatcttgaa
     3121 gacttttctt tcagccaaga attcttacat ttgtggagtt catcttggat tataatgaat
     3181 gattaattca aaacacaaca ccattttcta cacaacttca agatgaagct tgactgacat
     3241 gcacagctaa catggaagta ctgtattcta actgaagtcg ttgtacaggc aacacaccag
     3301 tttctgcagc caccgttgtt agttccttgg ttcatattga cttaagcaca cttgacatca
     3361 attgcatcaa gatgtgacat gttttataag aaaaaaaaga aaaagaaaca tttaaaaatg
     3421 aaaaaaaata tttttaggta ttttcacaaa caaaaactgg cttttaaata aatttgcttc
     3481 cataatggtt acatatgaca gataaaaaga aacaaaggaa tctagactgc ggggaagtgg
     3541 aatattgaaa caaggcttaa ggcatccgtt ccatattttt caaagccaaa tatgtaatgt
     3601 tgagaagaga agaaataata attaggaggt tcaaatcttg taatttagta ttgttattaa
     3661 aattttgctg tatatcctat tctttaacat ttggtgttaa tatcaaatta cttggcaatg
     3721 cttgacattt gaaataaact ttttctatgg ttttatttgc aagtgttcca ttaattttac
     3781 tagctacagt tagattataa agagtctaaa atgtaaaagg acactgtcaa ggttgggtta
     3841 atattttaga ttctgacagt gtcgctattc ccagctcatt tgaatcagtt cagctttttt
     3901 ttctgtggat gaacccaagc tgtgatgctc aaatacgcat tttgaactct gaagaacaag
     3961 gttgctctgg gttggagtgg tacttcatac cagcacatga ggagtcagac aggtgctgat
     4021 tcagaatcca gctcctctta a
//

LOCUS       NM_001001775            4041 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus glutamate ionotropic receptor AMPA type subunit 2
            (GRIA2), transcript variant 1, mRNA.
ACCESSION   NM_001001775 XM_420381
VERSION     NM_001001775.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4041)
  AUTHORS   Yoon YJ, White SL, Ni X, Gokin AP and Martin-Caraballo M.
  TITLE     Downregulation of GluA2 AMPA receptor subunits reduces the
            dendritic arborization of developing spinal motoneurons
  JOURNAL   PLoS ONE 7 (11), E49879 (2012)
   PUBMED   23226228
  REMARK    GeneRIF: Increased GluA2 expression and changes in the Ca(2+)
            permeability of AMPA receptors regulate the dendritic arborization
            of spinal cord motoneurons during embryonic development.
REFERENCE   2  (bases 1 to 4041)
  AUTHORS   Ni X, Sullivan GJ and Martin-Caraballo M.
  TITLE     Developmental characteristics of AMPA receptors in chick lumbar
            motoneurons
  JOURNAL   Dev Neurobiol 67 (11), 1419-1432 (2007)
   PUBMED   17497695
  REMARK    GeneRIF: These findings raise the possibility that Ca2+ influx
            through Ca(2+)-permeable AMPA receptors plays an important role
            during early embryonic development in chick spinal motoneurons.
REFERENCE   3  (bases 1 to 4041)
  AUTHORS   Migues PV, Cammarota M, Kavanagh J, Atkinson R, Powis DA and Rostas
            JA.
  TITLE     Maturational changes in the subunit composition of AMPA receptors
            and the functional consequences of their activation in chicken
            forebrain
  JOURNAL   Dev. Neurosci. 29 (3), 232-240 (2007)
   PUBMED   17047319
  REMARK    GeneRIF: Ca(2+) uptake in response to AMPA receptor activation
            decreases dramatically during maturation in chicken brain
            microslices without a change in tissue AMPA receptor content
REFERENCE   4  (bases 1 to 4041)
  AUTHORS   Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
            HS, Cho BW and Han JY.
  TITLE     Analysis of chicken embryonic gonad expressed sequenced tags
  JOURNAL   Anim. Genet. 37 (1), 85-86 (2006)
   PUBMED   16441308
REFERENCE   5  (bases 1 to 4041)
  AUTHORS   Mendieta J, Gago F and Ramirez G.
  TITLE     Binding of 5'-GMP to the GluR2 AMPA receptor: insight from targeted
            molecular dynamics simulations
  JOURNAL   Biochemistry 44 (44), 14470-14476 (2005)
   PUBMED   16262247
  REMARK    GeneRIF: Results show that 5'GMP appears to be a false agonist
            rather than a competitive antagonist of the GluR2 receptor.
REFERENCE   6  (bases 1 to 4041)
  AUTHORS   Aruscavage PJ and Bass BL.
  TITLE     A phylogenetic analysis reveals an unusual sequence conservation
            within introns involved in RNA editing
  JOURNAL   RNA 6 (2), 257-269 (2000)
   PUBMED   10688364
REFERENCE   7  (bases 1 to 4041)
  AUTHORS   Ravindranathan A, Parks TN and Rao MS.
  TITLE     Flip and flop isoforms of chick brain AMPA receptor subunits:
            cloning and analysis of expression patterns
  JOURNAL   Neuroreport 7 (15-17), 2707-2711 (1996)
   PUBMED   8981452
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            X89508.1, U59706.1, CV862778.1, CR385667.1, DR431149.1 and
            CR353879.1.
            On Jun 4, 2010 this sequence version replaced gi:161377422.
            
            Transcript Variant: This variant (1) encodes isoform 1 (also known
            as flip isoform). RNA editing (CAG->CGG) changes Gln607Arg.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X89508.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201363, SAMEA2201366
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            undergoes RNA editing :: PMID: 10688364
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2504              X89508.1           1-2504
            2505-2506           U59706.1           415-416
            2507-2880           X89508.1           2507-2880
            2881-3398           CV862778.1         172-689
            3399-3744           CR385667.1         444-789
            3745-3882           DR431149.1         710-847
            3883-4041           CR353879.1         112-270
FEATURES             Location/Qualifiers
     source          1..4041
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
                     /breed="Leghorn"
     gene            1..4041
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="glutamate ionotropic receptor AMPA type subunit 2"
                     /db_xref="CGNC:7152"
                     /db_xref="GeneID:414894"
     CDS             216..2867
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; AMPA glutamate receptor 2; AMPA receptor
                     GluR2/B; glutamate receptor B flip isoform; glutamate
                     receptor, ionotropic, AMPA 2"
                     /codon_start=1
                     /product="glutamate receptor 2 isoform 1 precursor"
                     /protein_id="NP_001001775.2"
                     /db_xref="CGNC:7152"
                     /db_xref="GeneID:414894"
                     /translation="MQKIMHISVCLAPVLWGLIWGAHSNSIQIGGLFPRGADQEYSAF
                     RVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKKSVNTITS
                     FCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWTKFAYLYDSDRGLST
                     LQAVLDSAAEKKWQVTAINVGNINNDRKDETYRSLFQDLEVKKERRVILDCERDKVND
                     IVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSGFQIVDYDDPLVSKFIQR
                     WSTLEEKEYPGAHTSTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANP
                     AVPWGHGVEIERALKQVQVEGLTGNIKFDQNGKRINFTINVMELKSTGPRKIGYWSEV
                     DKMVVNPLDGPLGNESSGLENKTIIVTTILESPYVMMKKNHEMLEGNDRYEGYCVDLA
                     TEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREE
                     VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR
                     FSPYEWHTEEFEDGRETQTNESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGG
                     VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR
                     SKIAVFDKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD
                     TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKD
                     SGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNIN
                     PTSSQNSQNFATYKEGYNVYGIESVKI"
     sig_peptide     216..278
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
     mat_peptide     279..2864
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /product="glutamate receptor 2 isoform 1"
     misc_feature    2035
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /note="RNA editing at nt 2035 (CAG->CGG) changes
                     Gln607Arg; Region: RNA editing site"
     STS             2869..3118
                     /gene="GRIA2"
                     /gene_synonym="GLUR2"
                     /standard_name="SHGC-67298"
                     /db_xref="UniSTS:89435"
ORIGIN      
        1 agagcggcgg aggcagctcg ggaacggtgt ctcccgctcg cggtgcccgg cctcggcctc
       61 gcctccctgc ccagggtctg ctcgcagccc ccggccgctc gaccggcgtg cggaggatcg
      121 aattcggcgg cggcggagga aggaaggaaa gaaagaagga aggaagaaag aagcgccgtt
      181 tctgtggctt tgtggatgct ctccttttcc tggaaatgca aaagattatg catatttctg
      241 tctgcctggc tcccgtgttg tggggactga tctggggggc ccattccaac agcatacaga
      301 tcggggggct gttcccgagg ggcgccgacc aggagtacag cgcgttccgg gtgggcatgg
      361 tgcagttctc cacctccgag ttcaggctca ctccccacat cgacaacctg gaggttgcca
      421 acagcttcgc cgtcaccaac gccttctgct cccagttttc cagaggagtc tttgctattt
      481 ttggattcta tgataagaag tctgtaaaca ccataacatc cttctgtggg actcttcatg
      541 tctccttcat aactccgagc ttcccgacag atggaacaca cccatttgtc attcagatga
      601 gacctgacct caagggagct ctccttagtt tgattgaata ctatcagtgg accaagtttg
      661 catatttata tgacagcgac agagggttat caacattgca agctgtgctg gattctgcag
      721 ctgaaaagaa gtggcaagtg actgctatca atgtaggaaa tattaacaat gacagaaaag
      781 atgaaaccta ccgttctcta tttcaagatc tagaagtgaa aaaggaaagg agagtgattt
      841 tggactgtga gcgtgataaa gtcaacgaca ttgttgatca ggtcatcaca attggtaaac
      901 atgttaaagg ataccattat attattgcaa atctgggatt tactgatgga gatttatcca
      961 aaattcagtt tggaggagct aatgtctcag gatttcagat agttgactat gatgatcctt
     1021 tggtgtcaaa atttatacaa cgttggtcaa cactggagga aaaagaatat cctggtgcac
     1081 acactagtac aataaagtat acatctgctc tgacctatga tgctgtgcaa gtgatgacag
     1141 aagctttccg taatttgcgt aaacagagga ttgagatctc cagaagagga aatgctggag
     1201 attgtcttgc aaatccagct gtaccctggg gtcatggtgt agaaatagaa agggcattga
     1261 aacaggttca ggtggaaggt ctaacaggga atataaagtt tgatcagaat ggaaagagaa
     1321 tcaattttac gataaatgtc atggaactca aaagtactgg ccctcggaag attggatatt
     1381 ggagtgaagt ggacaaaatg gttgtgaatc cacttgatgg ccctcttgga aatgaatctt
     1441 caggactaga aaataagact attattgtca ccactatttt ggagtcccca tatgttatga
     1501 tgaagaaaaa tcatgaaatg cttgaaggaa atgatcgata tgagggctat tgtgtggacc
     1561 tagctacaga aattgctaag cactgtggat tcaaatataa gctcacaatt gttggggatg
     1621 gcaagtatgg ggcaagggat gcagatacga aaatatggaa tgggatggtt ggagaacttg
     1681 tttatgggaa agctgatatt gcaattgctc cattaactat aacattggtg agagaagagg
     1741 tgattgactt ctcaaagccc tttatgagcc tggggatatc aataatgatc aagaaacctc
     1801 agaagtccaa gccaggagtg ttttcatttc ttgatccatt agcatatgaa atctggatgt
     1861 gcattgtttt tgcctacatt ggggtcagtg tagttttatt cctggtcagc agatttagtc
     1921 cgtacgagtg gcacacagag gaatttgaag atggaagaga aacacagact aatgaatcaa
     1981 ctaatgagtt tgggatattt aatagtctct ggttttccct gggtgccttt atgcggcaag
     2041 gatgcgatat ttcgccaaga tccctgtctg ggcgcattgt tggaggtgtg tggtggttct
     2101 ttaccctcat cataatctca tcctacacgg ctaacttagc tgccttcctg acggttgaga
     2161 ggatggtgtc tcccattgaa agtgcagagg atctttccaa gcaaacagaa attgcatatg
     2221 ggacattaga ttctggctcc actaaagagt tttttaggag atctaaaatt gcagtgtttg
     2281 ataaaatgtg gacctatatg aaaagtgcag agccatctgt gtttgtgagg actacagcag
     2341 aaggggtagc tcgagtacgg aagtccaaag gaaaatatgc ctacttgttg gagtcaacca
     2401 tgaatgagta catcgaacaa aggaaaccct gtgataccat gaaagttggt gggaatttgg
     2461 attccaaagg ctacggcatc gccacaccta aaggatcctc attaagaacc ccagtaaatc
     2521 ttgcagtatt gaaactcagt gagcaaggcg tcttagacaa gctgaaaaac aaatggtggt
     2581 acgataaagg tgaatgtgga gccaaggact ctggaagtaa ggagaagacc agtgccctca
     2641 gtctgagcaa cgtggcagga gtcttctata ttctcgtcgg gggacttggc ttggcaatgc
     2701 tggtggcttt gattgagttc tgttacaagt cgagagctga ggcgaagaga atgaaggtgg
     2761 caaagaacgc acagaatatt aacccaactt cctcacagaa ttcacagaat tttgcaactt
     2821 ataaggaagg ttacaacgta tatggaatcg aaagtgttaa aatttagggg atgaccttga
     2881 atgatgccat gaggagcaag gcaaggctgt cgatttcagg aagtactgga gaaaatggac
     2941 atgttatggc tccagaattt ccaaaagcag tgcatgcagt accttatgtg agtcctggca
     3001 tgagaatgaa tgtcagtgtg actgatctct cgtgattgat aagaaccttt tgagtgcctt
     3061 acacaatggt tttcttgtgc gtttattgtc aaagtggtga gaggcatcca gtatcttgaa
     3121 gacttttctt tcagccaaga attcttacat ttgtggagtt catcttggat tataatgaat
     3181 gattaattca aaacacaaca ccattttcta cacaacttca agatgaagct tgactgacat
     3241 gcacagctaa catggaagta ctgtattcta actgaagtcg ttgtacaggc aacacaccag
     3301 tttctgcagc caccgttgtt agttccttgg ttcatattga cttaagcaca cttgacatca
     3361 attgcatcaa gatgtgacat gttttataag aaaaaaaaga aaaagaaaca tttaaaaatg
     3421 aaaaaaaata tttttaggta ttttcacaaa caaaaactgg cttttaaata aatttgcttc
     3481 cataatggtt acatatgaca gataaaaaga aacaaaggaa tctagactgc ggggaagtgg
     3541 aatattgaaa caaggcttaa ggcatccgtt ccatattttt caaagccaaa tatgtaatgt
     3601 tgagaagaga agaaataata attaggaggt tcaaatcttg taatttagta ttgttattaa
     3661 aattttgctg tatatcctat tctttaacat ttggtgttaa tatcaaatta cttggcaatg
     3721 cttgacattt gaaataaact ttttctatgg ttttatttgc aagtgttcca ttaattttac
     3781 tagctacagt tagattataa agagtctaaa atgtaaaagg acactgtcaa ggttgggtta
     3841 atattttaga ttctgacagt gtcgctattc ccagctcatt tgaatcagtt cagctttttt
     3901 ttctgtggat gaacccaagc tgtgatgctc aaatacgcat tttgaactct gaagaacaag
     3961 gttgctctgg gttggagtgg tacttcatac cagcacatga ggagtcagac aggtgctgat
     4021 tcagaatcca gctcctctta a
//

LOCUS       NM_001167726            3766 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus REL proto-oncogene, NF-kB subunit (REL), mRNA.
ACCESSION   NM_001167726 XM_419277
VERSION     NM_001167726.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 3766)
  AUTHORS   Gupta N, Delrow J, Drawid A, Sengupta AM, Fan G and Gelinas C.
  TITLE     Repression of B-cell linker (BLNK) and B-cell adaptor for
            phosphoinositide 3-kinase (BCAP) is important for lymphocyte
            transformation by rel proteins
  JOURNAL   Cancer Res. 68 (3), 808-814 (2008)
   PUBMED   18245482
REFERENCE   2  (bases 1 to 3766)
  AUTHORS   Agudo D, Gomez-Esquer F, Diaz-Gil G, Martinez-Arribas F, Delcan J,
            Schneider J, Palomar MA and Linares R.
  TITLE     Proteomic analysis of the Gallus gallus embryo at stage-29 of
            development
  JOURNAL   Proteomics 5 (18), 4946-4957 (2005)
   PUBMED   16287166
  REMARK    Erratum:[Proteomics. 2006 Apr;6(7):2326. Agudo Garcillan, David
            [corrected to Agudo, David]]
REFERENCE   3  (bases 1 to 3766)
  AUTHORS   Phelps CB and Ghosh G.
  TITLE     Discreet mutations from c-Rel to v-Rel alter kappaB DNA
            recognition, IkappaBalpha binding, and dimerization: implications
            for v-Rel oncogenicity
  JOURNAL   Oncogene 23 (6), 1229-1238 (2004)
   PUBMED   14961076
  REMARK    GeneRIF: Alterations between v-Rel and c-Rel locate within the Rel
            homology region (RHR) of the family that might confer functional
            differences.
REFERENCE   4  (bases 1 to 3766)
  AUTHORS   Huang DB, Chen YQ, Ruetsche M, Phelps CB and Ghosh G.
  TITLE     X-ray crystal structure of proto-oncogene product c-Rel bound to
            the CD28 response element of IL-2
  JOURNAL   Structure 9 (8), 669-678 (2001)
   PUBMED   11587641
REFERENCE   5  (bases 1 to 3766)
  AUTHORS   You M, Ku PT, Hrdlickova R and Bose HR Jr.
  TITLE     ch-IAP1, a member of the inhibitor-of-apoptosis protein family, is
            a mediator of the antiapoptotic activity of the v-Rel oncoprotein
  JOURNAL   Mol. Cell. Biol. 17 (12), 7328-7341 (1997)
   PUBMED   9372964
REFERENCE   6  (bases 1 to 3766)
  AUTHORS   Kabrun N, Bumstead N, Hayman MJ and Enrietto PJ.
  TITLE     Characterization of a novel promoter insertion in the c-rel locus
  JOURNAL   Mol. Cell. Biol. 10 (9), 4788-4794 (1990)
   PUBMED   2167440
REFERENCE   7  (bases 1 to 3766)
  AUTHORS   Capobianco AJ, Simmons DL and Gilmore TD.
  TITLE     Cloning and expression of a chicken c-rel cDNA: unlike p59v-rel,
            p68c-rel is a cytoplasmic protein in chicken embryo fibroblasts
  JOURNAL   Oncogene 5 (3), 257-265 (1990)
   PUBMED   2179815
REFERENCE   8  (bases 1 to 3766)
  AUTHORS   Hannink M and Temin HM.
  TITLE     Transactivation of gene expression by nuclear and cytoplasmic rel
            proteins
  JOURNAL   Mol. Cell. Biol. 9 (10), 4323-4336 (1989)
   PUBMED   2555689
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AJ445799.1, M26381.1 and AADN04000360.1.
            On Nov 18, 2009 this sequence version replaced gi:118087506.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA2201357,
                              SAMEA2201361 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-687               AJ445799.1         2-688
            688-1059            M26381.1           567-938
            1060-1062           AADN04000360.1     406936-406938       c
            1063-1340           M26381.1           942-1219
            1341-3766           AADN04000360.1     403578-406003       c
FEATURES             Location/Qualifiers
     source          1..3766
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="3"
                     /map="3"
     gene            1..3766
                     /gene="REL"
                     /gene_synonym="p68-c-rel"
                     /note="REL proto-oncogene, NF-kB subunit"
                     /db_xref="CGNC:5934"
                     /db_xref="GeneID:396500"
     CDS             113..1909
                     /gene="REL"
                     /gene_synonym="p68-c-rel"
                     /note="C-Rel proto-oncogene protein; C-Rel protein; p68;
                     v-rel avian reticuloendotheliosis viral oncogene homolog"
                     /codon_start=1
                     /product="proto-oncogene c-Rel"
                     /protein_id="NP_001161198.1"
                     /db_xref="CGNC:5934"
                     /db_xref="GeneID:396500"
                     /translation="MAGISEPYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNK
                     TFPSIQILNYFGKVKIRTTLVTKNEPYKPHPHDLVGKDCRDGYYEAEFGPERRVLSFQ
                     NLGIQCVKKKDLKESISLRISKKINPFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHG
                     NYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFLLCDKVQKDDIEVR
                     FVLDNWEAKGSFSQADVHRQVAIVFRTPPFLRDITEPITVKMQLRRPSDQEVSEPMDF
                     RYLPDEKDPYGNKAKRQRSTLAWQKLIQDCGSAVTERPKAVPIPTVNPEGKLIKKEPN
                     MFSPTLMLPGLGTLTSSSQMYPPCSQMPHQPAQLGPGKQDTLPSCWQQLFSSSPSASS
                     LLSMHPHNSFTAEVPQPSAQGSSSLPAFHDNPLNWPDEKDSSFYRNFGSTNGMGAAMV
                     SAADMQSASSNSIVHATHQASATAASIVNMETNDMNCTSLNFEKYTQVLNVSNHRQQL
                     HQAPAACPPVAAPGSTPFSSQPNLADTAVYNSFLDQEVISDSRLSTNPLQNHQNSLTL
                     TDNQFYDTDGVHTDELYQSFQLDTNILQSYNH"
     misc_feature    908..910
                     /gene="REL"
                     /gene_synonym="p68-c-rel"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine, by PKA. {ECO:0000255}; propagated
                     from UniProtKB/Swiss-Prot (P16236.2); phosphorylation
                     site"
     misc_feature    977..994
                     /gene="REL"
                     /gene_synonym="p68-c-rel"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (P16236.2);
                     Region: Nuclear localization signal. {ECO:0000255}"
ORIGIN      
        1 gagtagggtg gtgagcgggt ggagaggcag ggttgagccc gtttgtgcga ggtgcgggcc
       61 cggagggcag tccgcggcgg cagggcccga gcagcgacgc ggagctgtca gcatggcggg
      121 tatctcagag ccctacattg aaatatttga acaacccagg caaaggggca tgcgtttcag
      181 atacaaatgt gaaggaagat cagcaggtag cattccagga gaacacagta ctgacaacaa
      241 caagacattc ccatctatac agattctgaa ctattttgga aaagtcaaaa taagaactac
      301 attggtaaca aagaatgaac cctacaagcc acaccctcat gatctagttg gaaaagactg
      361 cagagatggc tactatgaag cagagtttgg gcctgaacgt cgagtcctgt cttttcagaa
      421 tttgggaatt caatgtgtga agaagaaaga cctgaaagaa tcaatttctt tgcgaatctc
      481 aaagaagatc aaccccttta atgtgcctga agaacagctg cacaacatcg atgaatatga
      541 tctcaacgtt gtccgcctct gtttccaagc tttcctccct gatgaacatg gcaactacac
      601 attagctctt cctcctttga tttccaaccc aatctatgac aacagagctc ccaacacagc
      661 agaactgaga atttgccgtg tgaataagaa ctgtggaagt gtaaagggag gagatgaaat
      721 ttttcttctg tgtgataaag ttcaaaaaga tgacatagaa gtcagatttg tcttggacaa
      781 ctgggaggca aaaggctcct tctcccaagc tgatgttcat cgccaggttg caattgtgtt
      841 cagaacaccg ccattcctca gagacatcac agaacccatc acggtgaaga tgcagttacg
      901 aagaccttca gaccaggaag tcagtgaacc aatggatttc agatacctac cagatgaaaa
      961 ggatccatat ggtaacaaag caaaaaggca aagatcaacg ctggcctggc aaaagctcat
     1021 acaggactgt ggatcagctg tgacagagag gccaaaagca gttccaatcc ccactgtcaa
     1081 ccctgaagga aagctgatta agaaagaacc aaatatgttt tcacctacac tgatgctgcc
     1141 tgggctagga acgctgacga gctccagcca gatgtaccct ccatgcagcc agatgcccca
     1201 ccagcctgcg cagcttggcc ctggaaagca ggacacactc ccttcctgct ggcagcagct
     1261 gttcagctcc tccccttcag ccagcagcct gctcagcatg cacccgcaca acagcttcac
     1321 agcagaagtg cctcagccca gtgctcaggg cagtagctct ctcccagctt tccacgataa
     1381 cccactgaac tggcctgatg agaaggattc cagtttttac aggaattttg gcagcacaaa
     1441 tgggatggga gcagcgatgg tgtcagctgc ggatatgcag agtgcttcca gtaacagcat
     1501 cgtccatgcc actcatcagg ccagtgccac tgctgcgagc atcgtgaaca tggagaccaa
     1561 tgacatgaac tgcactagtc tcaactttga aaagtatact caggtgttaa atgtaagcaa
     1621 ccacaggcag cagctccatc aggcacctgc agcatgtcca cctgtggcag cccctggcag
     1681 cactcccttc agttcacaac caaatttagc tgatacagca gtttacaaca gctttctaga
     1741 ccaagaagtt ataagtgatt caagactatc aaccaaccct ctccagaacc atcagaacag
     1801 ccttaccctt acagataacc agttctatga caccgatggt gtccacactg atgagctcta
     1861 tcagtctttc cagttagata caaacatatt acaaagctat aaccattgag ccggcactag
     1921 gctgaggtag gcacacagag ctttacgaag gagtaactca cccttctgct ttctctttca
     1981 gaatgctact gtgtaaatct cacggtgtaa cttaaagttt tttatatata tatatatatc
     2041 cgtcagcccc caaactgttg cccttgaaga agcatttgag gtgttgtacc ttcaaagctc
     2101 ttaaacattt ttatggtgtt ggaaaaagga attacttaaa gcattgggaa gaaaagctgg
     2161 tatcttcaga agggtcaaat tttcaataat tcacagggtt aatactgttt ggaaataaaa
     2221 cattttgcta tggaaattaa attaacattt caaaaggaca aactaggaaa aaactgcatg
     2281 tgggcactct agttcagact cacctaacat ttatgtttta ttcaacttgc ttgaaagatt
     2341 taggtttctt accctctttc gcataaaata tttttctcct aaaacaaaat catgcattga
     2401 tttttttttt ctatatttca ccgcattcca tttgctttca aggcaaattt actctaaaga
     2461 aatttaatga ctatgtcatt gttagatatg ttttaaagac cggaaggttt gagtttttaa
     2521 atagtccagc tctcttgtaa atgcatcact gcacaaaaga atgagcagaa agtaaggact
     2581 tctctgcact tcatcccaag tgcactattt taaatgataa aaccctgttg ctttaggaat
     2641 ggagcatgct gttatttctc tggaatttgt tttttttctt tgtgtgtgtg tgtgtgtgtg
     2701 tgtgtagcca tgatgtgcat tttattttga actgcagaaa tgtattgagc cgaagcacct
     2761 acctggtcct tcctcagatg gcccagcagt ttcctgctat gcaagtgact gctgaagggc
     2821 tcaggtctgg ctccctagca cccctcacag gaggaggtga aatgcagccc actcccagtg
     2881 cgttgtatga acagtgtgag gctgttccaa tcagtgtcaa ttaaaaacag cctccagtcc
     2941 gcggtatcaa gaaccagaac ttcctctctt ctgctagctt cccagtctcc actctgaggc
     3001 ctgaggtgtg agatgtccag tgacacctcg cataggtatc tggctaggta aggcactcaa
     3061 gtctgcatta tagggctttg ctattttatt actaatgtac gaagcaacac agcaagaaac
     3121 atactggtgt atttatttat acagctggtt attgtggcag ataaggctta agaaccttat
     3181 ttttactgtc tggctatcta aaaatgcacc ctggaaaaaa gcaataaata gcacacttgg
     3241 atacataggg aacagaaacc gcaaccacaa gacaaaaagc cacttgagat gtacagtcat
     3301 ataccagata gaaaggaact ccaaaaacct ccgtggttta agggaaagca gtaattactc
     3361 aaatgcagta attcactgca tgcagagcaa tgaggtgctg cagctgtaat gcattatatc
     3421 aattacacgg gtctgacaga atgggctctt ccacactgta caaatgaagt caggaaaact
     3481 gttccctgta accccatgta cccaactcca cacagcagtt tttcctcact tctgcagcac
     3541 acctttccag aagcatgaaa gagatacaga gaacgcttgc aatgtgtcgt ttattcagtt
     3601 cttcctttta agttctcaat gtttaagttt attgaatgta aacattttct ttatagaagg
     3661 ctctttatag cacaatttgt ttttacagta taattaaata ttttcaaaat tctgtttttc
     3721 tttgtaaaca agttggtttg gtaattaaag aactggttat actgaa
//

LOCUS       NM_001167759            2041 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus RAD52 homolog, DNA repair protein (RAD52), transcript
            variant 1, mRNA.
ACCESSION   NM_001167759 XM_416383
VERSION     NM_001167759.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Froman DP, Kirby JD and Rhoads DD.
  TITLE     An expressed sequence tag analysis of the chicken reproductive
            tract transcriptome
  JOURNAL   Poult. Sci. 85 (8), 1438-1441 (2006)
   PUBMED   16903475
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Adachi N, Iiizumi S and Koyama H.
  TITLE     Evidence for a role of vertebrate Rad52 in the repair of
            topoisomerase II-mediated DNA damage
  JOURNAL   DNA Cell Biol. 24 (6), 388-393 (2005)
   PUBMED   15941391
  REMARK    GeneRIF: Chicken cells lacking Rad52 do exhibit increased
            sensitivity to the topoisomerase II inhibitor VP-16, demonstrating
            a major DNA repair defect associated with loss of Rad52 in
            vertebrate cells.
REFERENCE   3  (bases 1 to 2041)
  AUTHORS   Bezzubova OY, Schmidt H, Ostermann K, Heyer WD and Buerstedde JM.
  TITLE     Identification of a chicken RAD52 homologue suggests conservation
            of the RAD52 recombination pathway throughout the evolution of
            higher eukaryotes
  JOURNAL   Nucleic Acids Res. 21 (25), 5945-5949 (1993)
   PUBMED   8290357
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DT655931.1, AADN04000024.1, BX929422.1 and U01047.1.
            On Nov 18, 2009 this sequence version replaced gi:118082976.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: U01047.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMEA2201357,
                                    SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               DT655931.1         17-117
            102-102             AADN04000024.1     1801317-1801317
            103-423             DT655931.1         119-439
            424-632             BX929422.1         460-668
            633-727             AADN04000024.1     1806972-1807066
            728-1610            U01047.1           738-1620
            1611-2041           AADN04000024.1     1809810-1810240
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..2041
                     /gene="RAD52"
                     /note="RAD52 homolog, DNA repair protein"
                     /db_xref="CGNC:9834"
                     /db_xref="GeneID:418152"
     CDS             22..1290
                     /gene="RAD52"
                     /note="isoform 1 is encoded by transcript variant 1; DNA
                     repair protein RAD52 homolog"
                     /codon_start=1
                     /product="DNA repair protein RAD52 homolog isoform 1"
                     /protein_id="NP_001161231.1"
                     /db_xref="CGNC:9834"
                     /db_xref="GeneID:418152"
                     /translation="MPERQGKDSESHVSSSCTSTSNSVACFGQYQYTANEYQAIQHAL
                     RQKLGPEYISSRQAGGGQKVCYIEGHKVISLANEMFGFNGWAHSVTQQNVDFVDLNNG
                     RFYVGVCAFVKVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALKCFG
                     NALGNCILDKDYLQAVNKLPRQMPPELDLVKTKRQDYEPEIEKARYDGCLERQNPGWR
                     QQCETAPTCKPTHTEASGVTEDQKQPSSSGNTDSPAVECDATYQRKLRQKQLQQQFWE
                     QMEKRRQVKEVTPSSKQATANPPVKHSTPAAVQQELAIEEEFFADDLELWDISLETTD
                     LNKLMCHKAAGSPAAQQPPETPHRRHQMTTRNRTPQRMHYHKPPVRFAQLQPSAALTS
                     NSHGANQRTPAEHSPYRRSQSWKKRRLEPT"
ORIGIN      
        1 cggcccggcc tgacccaggg gatgcctgaa aggcaaggga aggacagtga aagccatgtc
       61 agcagcagct gtaccagcac cagcaactca gttgcttgct ttggacagta tcaatataca
      121 gcaaatgaat atcaagccat ccagcatgct cttcgtcaga aactgggtcc agagtatatc
      181 agcagtcggc aagctggggg aggacaaaag gtctgttaca ttgagggtca caaggtaatc
      241 agtctggcca atgagatgtt tggcttcaat ggctgggctc attcagtcac tcaacagaat
      301 gttgactttg ttgatctcaa caacggcagg ttctatgtgg gggtctgtgc attcgtgaaa
      361 gtgcagctta aggacggctc ataccatgaa gatgtgggct atggagtcag tgaaggcttg
      421 aagtccaagg ccttgtcctt agaaaaggca agaaaggagg cagtaacaga tggactgaag
      481 agggcgctca agtgctttgg gaatgctctt gggaactgca tcctagacaa agactaccta
      541 caagcagtta ataagcttcc acgtcagatg ccccctgagt tagatctggt gaaaactaaa
      601 agacaggact atgagcctga aatagagaaa gcaaggtacg acggctgttt ggaaaggcag
      661 aacccaggat ggagacaaca gtgtgaaacg gcaccaactt gtaagcccac tcacacagag
      721 gcttccggag tgacagaaga tcagaagcag ccaagcagtt ctggaaatac agattcccca
      781 gctgttgagt gtgatgccac gtatcagcgg aaactgcgac aaaagcagct gcagcaacag
      841 ttctgggaac agatggaaaa gagacgtcag gttaaggaag ttactcccag cagcaaacag
      901 gcaacagcca atcctcctgt aaaacacagc actccggcag cagtacagca ggaactggca
      961 atagaagaag agttctttgc agatgatctt gaactctggg acatttcctt ggagaccacc
     1021 gaccttaaca agttgatgtg tcacaaagca gcaggctcac cagcagcaca gcagcccccc
     1081 gagacgcccc acagacgtca ccagatgaca actcgtaaca ggacgcctca gagaatgcat
     1141 tatcacaaac cgcctgtgag gtttgcacag ttgcagccat ctgctgctct cacaagcaac
     1201 agccacggtg ccaaccaacg cacaccagca gagcacagcc cttacaggag aagtcaaagc
     1261 tggaagaagc ggaggctaga acccacatag gacacgtggt ggcatcatta cctacatgct
     1321 ggattacatc ataagactgc agttggctgc tcaaagtacg tgaggaagct tcatctatta
     1381 atagattgtc ctaaagcaac acagaatagc cagagagaca cagccagcaa gaacttcatg
     1441 tgctttgggt ttattacata gtccagattt ttttttctat aaacacacaa tcatttgtgc
     1501 tcctgcacaa ctcgtggctg ttttacaaat aatttgcctg agaattgtag cataagtaaa
     1561 ccttcaaatg agatgccata gcttcttccc tgctcagtgt tgcatttagg cgtacagaaa
     1621 agtttttttc caataaaacg aggacagggt gggctgtggc cccaggaaag cacactgacc
     1681 gcagtctccc attccctcgg gccgtttgca gctgtggcag cctctgcctc acatgcagca
     1741 cggctgcctg cccagaggct gcacaagcag gggcagagca ttgccctgac acggctctgc
     1801 ctcacctcaa ccctcaagca cgcggcattc ccagcagcag cagcagcaca tccacctgtg
     1861 cccacgcagc acggggtcag gaacacgcgg ggactgctat tgaggggtac atacagcatc
     1921 taagtgctgg tttggacctt ttgtgaaatg aatgagagct gcaatcttat acttttagtg
     1981 ttttaaatca gcttttactc ctttttaaca caagaataaa cactaaatgt ggacagacaa
     2041 a
//

LOCUS       NM_001167758            2038 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus RAD52 homolog, DNA repair protein (RAD52), transcript
            variant 2, mRNA.
ACCESSION   NM_001167758
VERSION     NM_001167758.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2038)
  AUTHORS   Froman DP, Kirby JD and Rhoads DD.
  TITLE     An expressed sequence tag analysis of the chicken reproductive
            tract transcriptome
  JOURNAL   Poult. Sci. 85 (8), 1438-1441 (2006)
   PUBMED   16903475
REFERENCE   2  (bases 1 to 2038)
  AUTHORS   Adachi N, Iiizumi S and Koyama H.
  TITLE     Evidence for a role of vertebrate Rad52 in the repair of
            topoisomerase II-mediated DNA damage
  JOURNAL   DNA Cell Biol. 24 (6), 388-393 (2005)
   PUBMED   15941391
  REMARK    GeneRIF: Chicken cells lacking Rad52 do exhibit increased
            sensitivity to the topoisomerase II inhibitor VP-16, demonstrating
            a major DNA repair defect associated with loss of Rad52 in
            vertebrate cells.
REFERENCE   3  (bases 1 to 2038)
  AUTHORS   Bezzubova OY, Schmidt H, Ostermann K, Heyer WD and Buerstedde JM.
  TITLE     Identification of a chicken RAD52 homologue suggests conservation
            of the RAD52 recombination pathway throughout the evolution of
            higher eukaryotes
  JOURNAL   Nucleic Acids Res. 21 (25), 5945-5949 (1993)
   PUBMED   8290357
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DT655931.1, AADN04000024.1 and BX929422.1.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the 3' coding region, compared to variant 1. This
            results in a shorter protein (isoform 2), compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: BX929422.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMEA2201357,
                                    SAMEA2201358 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               DT655931.1         17-117
            102-102             AADN04000024.1     1801317-1801317
            103-423             DT655931.1         119-439
            424-632             BX929422.1         460-668
            633-633             AADN04000024.1     1806972-1806972
            634-1607            BX929422.1         670-1643
            1608-2038           AADN04000024.1     1809810-1810240
FEATURES             Location/Qualifiers
     source          1..2038
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
                     /breed="Leghorn"
     gene            1..2038
                     /gene="RAD52"
                     /note="RAD52 homolog, DNA repair protein"
                     /db_xref="CGNC:9834"
                     /db_xref="GeneID:418152"
     CDS             22..1287
                     /gene="RAD52"
                     /note="isoform 2 is encoded by transcript variant 2; DNA
                     repair protein RAD52 homolog"
                     /codon_start=1
                     /product="DNA repair protein RAD52 homolog isoform 2"
                     /protein_id="NP_001161230.1"
                     /db_xref="CGNC:9834"
                     /db_xref="GeneID:418152"
                     /translation="MPERQGKDSESHVSSSCTSTSNSVACFGQYQYTANEYQAIQHAL
                     RQKLGPEYISSRQAGGGQKVCYIEGHKVISLANEMFGFNGWAHSVTQQNVDFVDLNNG
                     RFYVGVCAFVKVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALKCFG
                     NALGNCILDKDYLQAVNKLPRQMPPELDLVKTKRQDYEPEIEKARYDGCLERQNPGWR
                     QQCETAPTCKPTHTEASGVTEDQKQPSSSGNTDSPAVECDATYQRKLRQKQLQQQFWE
                     QMEKRRQVKEVTPSSKQATANPPVKHSTPAAVQQELAIEEEFFADDLELWDISLETTD
                     LNKLMCHKAAGSPAAQQPPETPHRRHQMTTRNRTPQRMHYHKPPVRFAQLQPSAALTS
                     NSHGANQRTPEHSPYRRSQSWKKRRLEPT"
ORIGIN      
        1 cggcccggcc tgacccaggg gatgcctgaa aggcaaggga aggacagtga aagccatgtc
       61 agcagcagct gtaccagcac cagcaactca gttgcttgct ttggacagta tcaatataca
      121 gcaaatgaat atcaagccat ccagcatgct cttcgtcaga aactgggtcc agagtatatc
      181 agcagtcggc aagctggggg aggacaaaag gtctgttaca ttgagggtca caaggtaatc
      241 agtctggcca atgagatgtt tggcttcaat ggctgggctc attcagtcac tcaacagaat
      301 gttgactttg ttgatctcaa caacggcagg ttctatgtgg gggtctgtgc attcgtgaaa
      361 gtgcagctta aggacggctc ataccatgaa gatgtgggct atggagtcag tgaaggcttg
      421 aagtccaagg ccttgtcctt agaaaaggca agaaaggagg cagtaacaga tggactgaag
      481 agggcgctca agtgctttgg gaatgctctt gggaactgca tcctagacaa agactaccta
      541 caagcagtta ataagcttcc acgtcagatg ccccctgagt tagatctggt gaaaactaaa
      601 agacaggact atgagcctga aatagagaaa gcaaggtacg acggctgttt ggaaaggcag
      661 aacccaggat ggagacaaca gtgtgaaacg gcaccaactt gtaagcccac tcacacagag
      721 gcttccggag tgacagaaga tcagaagcag ccaagcagtt ctggaaatac agattcccca
      781 gctgttgagt gtgatgccac gtatcagcgg aaactgcgac aaaagcagct gcagcaacag
      841 ttctgggaac agatggaaaa gagacgtcag gttaaggaag ttactcccag cagcaaacag
      901 gcaacagcca atcctcctgt aaaacacagc actccggcag cagtacagca ggaactggca
      961 atagaagaag agttctttgc agatgatctt gaactctggg acatttcctt ggagaccacc
     1021 gaccttaaca agttgatgtg tcacaaagca gcaggctcac cagcagcaca gcagcccccc
     1081 gagacgcccc acagacgtca ccagatgaca actcgtaaca ggacgcctca gagaatgcat
     1141 tatcacaaac cgcctgtgag gtttgcacag ttgcagccat ctgctgctct cacaagcaac
     1201 agccacggtg ccaaccaacg cacaccagag cacagccctt acaggagaag tcaaagctgg
     1261 aagaagcgga ggctagaacc cacataggac acgtggtggc atcattacct acatgctgga
     1321 ttacatcata agactgcagt tggctgctca aagtacgtga ggaagcttca tctattaata
     1381 gattgtccta aagcaacaca gaatagccag agagacacag ccagcaagaa cttcatgtgc
     1441 tttgggttta ttacatagtc cagatttttt tttctataaa cacacaatca tttgtgctcc
     1501 tgcacaactc gtggctgttt tacaaataat ttgcctgaga attgtagcat aagtaaacct
     1561 tcaaatgaga tgccatagct tcttccctgc tcagtgttgc atttaggcgt acagaaaagt
     1621 ttttttccaa taaaacgagg acagggtggg ctgtggcccc aggaaagcac actgaccgca
     1681 gtctcccatt ccctcgggcc gtttgcagct gtggcagcct ctgcctcaca tgcagcacgg
     1741 ctgcctgccc agaggctgca caagcagggg cagagcattg ccctgacacg gctctgcctc
     1801 acctcaaccc tcaagcacgc ggcattccca gcagcagcag cagcacatcc acctgtgccc
     1861 acgcagcacg gggtcaggaa cacgcgggga ctgctattga ggggtacata cagcatctaa
     1921 gtgctggttt ggaccttttg tgaaatgaat gagagctgca atcttatact tttagtgttt
     1981 taaatcagct tttactcctt tttaacacaa gaataaacac taaatgtgga cagacaaa
//

LOCUS       NM_001163651            1280 bp    mRNA    linear   VRT 04-JAN-2017
DEFINITION  Gallus gallus progestin and adipoQ receptor family member 7
            (PAQR7), mRNA.
ACCESSION   NM_001163651 XM_423259
VERSION     NM_001163651.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GQ203624.1.
            On Jul 28, 2009 this sequence version replaced gi:118101610.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GQ203624.1, BU239975.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2201368, SAMEA2201371
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="23"
                     /map="23"
     gene            1..1280
                     /gene="PAQR7"
                     /note="progestin and adipoQ receptor family member 7"
                     /db_xref="CGNC:7361"
                     /db_xref="GeneID:425505"
     misc_feature    138..140
                     /gene="PAQR7"
                     /note="upstream in-frame stop codon"
     CDS             189..1229
                     /gene="PAQR7"
                     /note="progestin and adipoQ receptor family member VII,
                     membrane progestin receptor alpha variant 2; progestin and
                     adipoQ receptor family member VII, membrane progestin
                     receptor alpha variant 3"
                     /codon_start=1
                     /product="membrane progestin receptor alpha"
                     /protein_id="NP_001157123.1"
                     /db_xref="CGNC:7361"
                     /db_xref="GeneID:425505"
                     /translation="MAAVVAEKLSRLFISVRQVPQLLAPPVPTTVSSSEVPRVFWKPY
                     IHTGYRPVHQTWRYYFSTLFQQHNEAINVWTHLVATLILLLRFQQLSQRVDFGQDPHA
                     QPLLIIITASITYLTFSTLAHLLQAKSEFWHYSFFFMDYVGVAIYQYGSALVHYYYAI
                     EPSWHEKIQGFFMPTAALLAWLSCAGSCYAKFRYHQSAGLLGRLCQEMPSGLAYLLDI
                     SPVVHRICTASPAERTDPALLYHKCQVLFFLIGAFFFSHPYPEKLLPGKCYFFGQSHQ
                     IFHVFLVLCTLAQIEAVVLDYESRRHIYSSLQGDLAHHFSALCVFTVTCSVLTAAYMA
                     RKVRDKLSFKED"
ORIGIN      
        1 gagactccgt cggaatcggt gctccgggga gagctccgca gcttttcctg gctgagctat
       61 acttgaagcg actgaacttg gcaggagctg gggcttaaag cagcaccgga gctgggctgg
      121 tttcttccca acttgtctga gcaagagcag gtgctttgga gcaacgagag ctgcggtgcg
      181 gctgtgccat ggcagcggtg gtggcagaga agctcagccg cctcttcatc agcgtgcgcc
      241 aggtccccca gctgctggcc cccccggtgc ccaccaccgt cagcagctcc gaggtgccga
      301 gggttttctg gaagccttac atccacaccg gctaccgccc ggtgcaccaa acctggcgct
      361 attacttctc gacgctcttc cagcaacaca acgaagccat caacgtgtgg acccacctgg
      421 tggccacgct gatcctgctg ctgcgcttcc agcagctctc ccagagggtg gattttgggc
      481 aggacccgca cgcccagccg ctcctcatca tcatcacggc atccatcacc tacctgacgt
      541 tcagcacgct cgctcacctc ctgcaggcta agtccgagtt ctggcactac agcttcttct
      601 tcatggacta cgtgggggtg gccatctacc agtatggcag tgctctggtg cactactact
      661 atgccatcga gcccagctgg cacgagaaga tccagggctt cttcatgccc acagctgcgc
      721 tgctggcctg gctgtcgtgt gcaggctcat gctacgccaa gttccgctac catcagtcag
      781 cagggctgct gggccggctg tgccaggaga tgccctcagg cctggcctac ctgctggata
      841 tcagccctgt tgtgcaccgc atctgcaccg catcacctgc ggagcgcaca gatccggccc
      901 tgctgtacca caagtgccag gtgctgttct tcctcatcgg tgcctttttt ttctcccatc
      961 cttacccaga gaagttgctt cccgggaaat gctacttctt tgggcaaagc catcagatct
     1021 tccatgtctt cctggtgctt tgcactctgg cacagatcga ggccgtggtg ctggactatg
     1081 agtccaggcg gcacatctac tcctcgctgc agggtgacct ggcgcaccac ttctctgccc
     1141 tgtgtgtctt cactgtgacc tgctccgtgc tcacggctgc atacatggca cggaaggtga
     1201 gggacaaact gagcttcaaa gaagattgag atttggggca gagtggggga taccatggcc
     1261 aaagctgcat gctccaagga
//