# HG changeset patch
# User yating-l
# Date 1532103936 14400
# Node ID 79b23a8afb15c4415768a7c0cd8ebe91795d0e2f
# Parent  315a40b0b69436ba17b0f26a592813931595ad84
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 398c2fd8d1cb38decddf8cd58574cf39b1b52eaa

diff -r 315a40b0b694 -r 79b23a8afb15 TrackHub.py
--- a/TrackHub.py	Mon Jun 25 16:05:01 2018 -0400
+++ b/TrackHub.py	Fri Jul 20 12:25:36 2018 -0400
@@ -106,9 +106,8 @@
         subtools.prepare_refseqs(self.reference_genome.false_path, self.mySpecieFolderPath)
 
     def _indexName(self):
-        if self.nameIndexTrackList:
-            subtools.generate_names(self.mySpecieFolderPath, self.nameIndexTrackList)
-            print "finished name index \n"
+        subtools.generate_names(self.mySpecieFolderPath, self.nameIndexTrackList)
+        print "finished name index \n"
 
     def _outHtml(self):
         mylookup = TemplateLookup(directories=[os.path.join(self.tool_directory, 'templates')],
diff -r 315a40b0b694 -r 79b23a8afb15 jbrowseArchiveCreator.xml
--- a/jbrowseArchiveCreator.xml	Mon Jun 25 16:05:01 2018 -0400
+++ b/jbrowseArchiveCreator.xml	Fri Jul 20 12:25:36 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.3.1">
+<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.3.2">
     <description>
         This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin
     </description>
diff -r 315a40b0b694 -r 79b23a8afb15 util/subtools.py
--- a/util/subtools.py	Mon Jun 25 16:05:01 2018 -0400
+++ b/util/subtools.py	Fri Jul 20 12:25:36 2018 -0400
@@ -384,8 +384,9 @@
 
 def generate_names(outputFolder, nameIndexTrackList, hashBits=4):
     array_call = ['generate-names.pl', '--hashBits', str(hashBits), '-v', '--completionLimit', '0', '--out', outputFolder]
-    array_call.append('--tracks')
-    array_call.append(','.join(nameIndexTrackList))
+    if nameIndexTrackList:
+        array_call.append('--tracks')
+        array_call.append(','.join(nameIndexTrackList))
     p = _handleExceptionAndCheckCall(array_call)
     return p