Mercurial > repos > yating-l > jbrowsearchivecreator
changeset 8:56d9d10b4990 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 2285eddcfe689d70d89571a045f204b74cc6890c
| author | yating-l |
|---|---|
| date | Fri, 27 Apr 2018 15:36:51 -0400 |
| parents | 5d5fdcb798da |
| children | 7cb67cbbd8e5 |
| files | jbrowseArchiveCreator.xml tracks/CanvasFeatures.py |
| diffstat | 2 files changed, 4 insertions(+), 1 deletions(-) [+] |
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--- a/jbrowseArchiveCreator.xml Fri Apr 20 13:51:23 2018 -0400 +++ b/jbrowseArchiveCreator.xml Fri Apr 27 15:36:51 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.1"> +<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.2"> <description> This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin </description>
--- a/tracks/CanvasFeatures.py Fri Apr 20 13:51:23 2018 -0400 +++ b/tracks/CanvasFeatures.py Fri Apr 27 15:36:51 2018 -0400 @@ -24,7 +24,10 @@ track['type'] = 'JBrowse/View/Track/' + self.trackType track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix' if self.dataType == 'gff': + # need .gff3.gz extension to index the name of the track with generate-name.pl track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz') + # needed to show match_part in Blat and Blast alignment as subfeatures + track['glyph'] = "JBrowse/View/FeatureGlyph/Segments" else: track['urlTemplate'] = os.path.join('tracks', self.trackName) track['label'] = self.trackLabel