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author yating-l
date Thu, 21 Sep 2017 16:37:59 -0400
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1 <?xml version="1.0" ?>
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2 <tool_dependency>
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3 <package name="ucsc_hac" version="340">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions architecture="x86_64" os="darwin">
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7 <action type="download_by_url" sha256sum="3793f8a762e41905374cad2fca44f9547eacd81eccad53908f229fa2fcda294b">http://old-gep.wustl.edu/~galaxy/packages/ucsc_hac_340_macOS_x86_64.tar.gz</action>
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8 <action type="move_directory_files">
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9 <source_directory>.</source_directory>
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10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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11 </action>
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12 </actions>
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13 <actions architecture="x86_64" os="linux">
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14 <action type="download_by_url" sha256sum="dba14232e2a404c0b83542529c98a60affbd7b672f6c8ae58384610c0b88e3b4">http://old-gep.wustl.edu/~galaxy/packages/ucsc_hac_340_linux_x86_64.tar.gz</action>
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15 <action type="move_directory_files">
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16 <source_directory>.</source_directory>
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17 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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18 </action>
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19 </actions>
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20 <action type="set_environment">
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21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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22 </action>
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23 </actions_group>
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24 </install>
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25 <readme>The well known UCSC tools from Jim Kent. This subset of UCSC tools are used for HubArchiveCreator, including
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26 - bedGraphToBigWig
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27 - bedToBigBed
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28 - gff3ToGenePred
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29 - gtfToGenePred
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30 - genePredToBed
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31 - genePredToBigGenePred
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32 - faToTwoBit
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33 - pslToBigPsl
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34 - twoBitInfo
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35 - pslCheck
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36 - validateFiles
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37 </readme>
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38 </package>
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39 </tool_dependency>