Mercurial > repos > yating-l > package_ucsc_rename_bigwig_340

changeset 0:39d26518c84b draft default tip

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planemo upload commit d630dda5f5480884c7b4f349704e8f68a6f726aa
author yating-l
date Mon, 25 Jun 2018 14:54:19 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 56 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jun 25 14:54:19 2018 -0400
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+<?xml version="1.0" ?>
+<tool_dependency>
+    <package name="ucsc_rename_bigwig" version="340">
+        <install version="1.0">
+            <actions_group>
+                <actions os="darwin" architecture="x86_64">
+                    <action type="download_by_url"
+                            sha256sum="f7d88e5a4d4a99f1489ae64ea35031593f10b80d58efbac7f29e372dbc827f45">
+                        http://old-gep.wustl.edu/~galaxy/packages/ucsc_rename_bigwig_340_macOS_x86_64.tar.gz
+                    </action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+
+                <actions os="linux" architecture="x86_64">
+                    <action type="download_by_url"
+                            sha256sum="cadb724cbfebda2ec3a43519f7cb5eec97842ba6f271f6ad78af580bc3f9cd9a">
+                        http://old-gep.wustl.edu/~galaxy/packages/ucsc_rename_bigwig_340_linux_x86_64.tar.gz
+                    </action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+
+                <!-- Display error message for unsupported OS and CPU architecture -->
+                <actions>
+                    <action type="shell_command">
+                        echo "ERROR: This package only supports 64-bit systems running macOS or Linux"
+                    </action>
+                    <action type="shell_command">false</action>
+                </actions>
+
+                <!-- update $PATH environment variable -->
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+        <![CDATA[
+            This package contains the utilities for renaming bigWig files
+            `bigWig files <https://genome.ucsc.edu/goldenpath/help/bigWig.html>`_.
+            The utilities were created by the
+            `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_
+            at the UCSC Genomics Institute.
+
+            The bigWig file format is designed to store dense continuous datasets
+            and it is compatible with many genome browsers (e.g., UCSC Genome Browser,
+            JBrowse, IGV).
+        ]]>
+        </readme>
+    </package>
+</tool_dependency>