annotate tool_dependencies.xml @ 0:b977527e6e14 draft

planemo upload

<?xml version="1.0" ?>
<tool_dependency>
    <package name="ucsc_twobit" version="340">
        <install version="1.0">
            <actions_group>
                <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url"
                            sha256sum="aa0df6fc9c5dfe83cb94456e1100a5ecd7a247e7521d91f4e91c46c1b21fc9ab">
                        http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_macOS_x86_64.tar.gz
                    </action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <actions os="linux" architecture="x86_64">
                    <action type="download_by_url"
                            sha256sum="31b18fd6f0f24981815ded0a1790be49ca47a5d2cce40c3af29ffc6f5bea4922">
                        http://old-gep.wustl.edu/~wilson/packages/ucsc_twobit/ucsc_twobit_340_linux_x86_64.tar.gz
                    </action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                </actions>

                <!-- Display error message for unsupported OS and CPU architecture -->
                <actions>
                    <action type="shell_command">
                        echo "ERROR: This package only supports 64-bit systems running macOS or Linux"
                    </action>
                    <action type="shell_command">false</action>
                </actions>

                <!-- update $PATH environment variable -->
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
        <![CDATA[
            This package contains the utilities for constructing and manipulating
            `twoBit files <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_.
            The utilities were created by the
            `Genome Bioinformatics Group <https://genome.ucsc.edu/staff.html>`_
            at the UCSC Genomics Institute.

            The twoBit file format is designed to store genomic sequences and the
            associated repeat masking information. The twoBit file is used by the
            UCSC Genome Browser and by tools such as
            `BLAT <https://genome.ucsc.edu/goldenpath/help/blatSpec.html>`_.
        ]]>
        </readme>
    </package>
</tool_dependency>