Mercurial > repos > yating-l > psltobigpsl

view psltobigpsl.xml @ 0:37b4b4f59084 draft

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planemo upload for repository https://github.com/Yating-L/psltobigpsl.git commit 6815597fe564030e70de3ffe147374e8c6dfcdf5
author yating-l
date Fri, 20 Jan 2017 17:00:09 -0500
parents
children 7cd07dd27927
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<tool id="pslToBigPsl" name="pslToBigPsl" version="0.1.0">
    <requirements>
        <!-- Requires Conda -->
        <requirement type="package" version="0.1.0">psltoBigPsl</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
        $__tool_directory__/pslToBigPsl $input stdout | sort -k1,1 -k2,2n > $output
    ]]></command>
    <inputs>
        <param name="input" label="Psl file" type="data" format="psl" />
    </inputs>
    <outputs>
        <data name="output" format="bed" />
    </outputs>
    <help><![CDATA[
        Transform a Psl format file to a Bed format file.
        Input: Psl File
        Ouput: BigPsl File
    ]]></help>
</tool>