Mercurial > repos > yating-l > regtools_junctions_extract
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| author | yating-l |
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| date | Wed, 12 Apr 2017 17:44:58 -0400 |
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| children | 06d9062f5430 |
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| 1 A Galaxy Wrapper for regtools | |
| 2 ============================= | |
| 3 | |
| 4 This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/). | |
| 5 | |
| 6 This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neighter "+" or "-") will be removed. | |
| 7 | |
| 8 This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000. | |
| 9 | |
| 10 The output is BED 12+1. |