# HG changeset patch
# User yating-l
# Date 1499705273 14400
# Node ID 4686151c96ad85ca6c177684fad43903032508a6
planemo upload commit c1f0c5ceaac87b6b1db12160a8f5b287635db61b
diff -r 000000000000 -r 4686151c96ad test-data/contigs.2bit
Binary file test-data/contigs.2bit has changed
diff -r 000000000000 -r 4686151c96ad test-data/contigs_cytoband.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/contigs_cytoband.bed Mon Jul 10 12:47:53 2017 -0400
@@ -0,0 +1,2 @@
+contig10 0 43013 contig10 gneg
+contig12 0 56019 contig12 gneg
diff -r 000000000000 -r 4686151c96ad tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Mon Jul 10 12:47:53 2017 -0400
@@ -0,0 +1,6 @@
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diff -r 000000000000 -r 4686151c96ad twobit_to_cytoband.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/twobit_to_cytoband.xml Mon Jul 10 12:47:53 2017 -0400
@@ -0,0 +1,45 @@
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+ Creates a cytoband file from a twoBit file
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+ ucsc_macros.xml
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+ "${bed_output}"
+]]>
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+`_
+from a twoBit file to enable quicker navigation of individual scaffolds
+in the UCSC Genome Browser.
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+ ]]>
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diff -r 000000000000 -r 4686151c96ad ucsc_macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ucsc_macros.xml Mon Jul 10 12:47:53 2017 -0400
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+ ucsc_twobit
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+ C
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+ @article{Kent01062002,
+author = {Kent, W. James and Sugnet, Charles W. and Furey, Terrence S. and Roskin, Krishna M. and Pringle, Tom H. and Zahler, Alan M. and Haussler, and David},
+title = {The Human Genome Browser at UCSC},
+volume = {12},
+number = {6},
+pages = {996-1006},
+year = {2002},
+doi = {10.1101/gr.229102},
+URL = {http://genome.cshlp.org/content/12/6/996.abstract},
+eprint = {http://genome.cshlp.org/content/12/6/996.full.pdf+html},
+journal = {Genome Research}
+}
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