Mercurial > repos > yating-l > ucsc_pslpostarget

annotate README.rst @ 1:0ffee257645e draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 9bdf838d0eb364151ed88b1cd7ec2682a1a267b0
author yating-l
date Wed, 16 May 2018 18:44:23 -0400
parents fe51c5a974b5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
1 Galaxy wrapper for UCSC pslPosTarget tool (version: v340)
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
2 ==========================================================
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
3
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
4 flip psl strands so target is positive and implicit
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
5
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
6 usage:
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
7 -------
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
8
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
9 $ pslPosTarget inPsl outPsl
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
10
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
11 options:
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
12
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
13 Source code:
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
14 -------------
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
15
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
16 http://hgdownload.cse.ucsc.edu/admin/exe/
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
17
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
18 Licence
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
19 -------
fe51c5a974b5 planemo upload commit 8c3aff54626caa56e8396ef25308754ef4beb3c5
yating-l
parents:
diff changeset
20 Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).