Mercurial > repos > yhoogstrate > crossmap

diff test-data/test_bam_01_output_a.sam @ 0:bfcdabc062ca draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
author yhoogstrate
date Wed, 26 Aug 2015 11:04:47 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_bam_01_output_a.sam	Wed Aug 26 11:04:47 2015 -0400
@@ -0,0 +1,23 @@
+@HD	VN:1.0	SO:coordinate
+@SQ	SN:chr1	LN:247249719
+@SQ	SN:chr10	LN:135374737
+@SQ	SN:chr2	LN:242951149
+@SQ	SN:chr3	LN:199501827
+@SQ	SN:chr4	LN:191273063
+@PG	ID:-	VN:1.0.0	CL:cmatrix
+@PG	ID:CrossMap	VN:0.2
+@CO	Test data for CrossMap bam
+@CO	Liftover from original BAM/SAM file: 
+@CO	Liftover is based on the chain file: 
+read_001	0	chr1	89863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_002	0	chr2	90000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_003	0	chr3	75000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_006	0	chr1	989863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_007	0	chr2	990000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_008	0	chr3	975000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_011	16	chr1	89863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_012	16	chr2	90000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_013	16	chr3	75000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_016	16	chr1	989863	60	50M	=	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_017	16	chr2	990000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*
+read_018	16	chr3	975000	60	50M	chr1	1	0	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	*