Mercurial > repos > yhoogstrate > crossmap

view test-data/test_vcf_01_output.vcf @ 3:0e0294f5ab3a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 6e66f1e17650f888c84ec82d100195db61dffdc7-dirty
author yhoogstrate
date Thu, 08 Oct 2015 04:54:07 -0400
parents bfcdabc062ca
children
line wrap: on
line source

##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
##liftOverProgram=CrossMap(https://sourceforge.net/projects/crossmap/)
##liftOverFile=test_vcf_01.over.chain
##new_reference_genome=test_vcf_01.fasta
##liftOverTime=August13,2015
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMP001	SAMP002
2	227	rs11449	C	A	.	PASS	.	GT	0/0	0/1
2	137	rs84825	T	C	.	PASS	.	GT:GP	0/1:.	0/1:0.03,0.97,0
2	36	rs84823	C	G	.	PASS	.	GT:PL	./.:.	1/1:10,5,0