comparison edgeR_Design_from_Expression_Matrix.xml @ 7:55f4e42f91ba draft

Uploaded

6:a6e388381821

        
        <repeat name="treatments" title="Factor/Condition" min="1">
            <param name="name" type="text" value="FactorName" label="Specify a name for the factor / condition" help="e.g. 'Tumor vs. Normal', 'Timepoint' or 'DiseaseState'. Field must be non-numerical, preferably only letters!!" />
            <repeat name="rep_factorLevel" title="Factor level" min="1">
                <param name="factorLevel" type="text" value="FactorLevel" label="Specify a condition" help="e.g. Tumor or Normal; Treated, untreaded or placebo. Field must be non-numerical, preferably only letters!!" />
                <param name="factorIndex" numerical="false" use_header_names="true" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" multiple="true" size="120" display="checkboxes">
                    <validator type="no_options" message="Please select at least one column." />
                </param>
            </repeat>
        </repeat>
        

            <when value="false" />
            <when value="true">
                <repeat name="blocking_repeat" title="Blocking condition" min="1">
                    <param name="blocking_name" type="text" value="" label="Specify a name for a blocking condition" help="e.g.'Patients' or 'Batches'" />
                    <repeat name="block" title="Block" min="2">
                        <param name="block_index" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" numerical="True" multiple="true" use_header_names="true" size="120" display="checkboxes">
                            <validator type="no_options" message="Please select at least one column." />
                        </param>
                    </repeat>
                </repeat>
            </when>

7:55f4e42f91ba

        
        <repeat name="treatments" title="Factor/Condition" min="1">
            <param name="name" type="text" value="FactorName" label="Specify a name for the factor / condition" help="e.g. 'Tumor vs. Normal', 'Timepoint' or 'DiseaseState'. Field must be non-numerical, preferably only letters!!" />
            <repeat name="rep_factorLevel" title="Factor level" min="1">
                <param name="factorLevel" type="text" value="FactorLevel" label="Specify a condition" help="e.g. Tumor or Normal; Treated, untreaded or placebo. Field must be non-numerical, preferably only letters!!" />
                <param name="factorIndex" numerical="false" use_header_names="true" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" multiple="true">
                    <validator type="no_options" message="Please select at least one column." />
                </param>
            </repeat>
        </repeat>
        

            <when value="false" />
            <when value="true">
                <repeat name="blocking_repeat" title="Blocking condition" min="1">
                    <param name="blocking_name" type="text" value="" label="Specify a name for a blocking condition" help="e.g.'Patients' or 'Batches'" />
                    <repeat name="block" title="Block" min="2">
                        <param name="block_index" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" numerical="True" multiple="true" use_header_names="true">
                            <validator type="no_options" message="Please select at least one column." />
                        </param>
                    </repeat>
                </repeat>
            </when>