Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison edgeR_Convert_DGE_Table_to_Bedgraph.xml @ 8:31a23ae7c61e draft default tip
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/edger_with_design_matrix commit eb5cd7834861d8ddbffce974ed0ca6f1c0ecccf2
| author | erasmus-medical-center |
|---|---|
| date | Tue, 14 Feb 2017 10:01:51 -0500 |
| parents | ec951a5017f8 |
| children |
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| 7:55f4e42f91ba | 8:31a23ae7c61e |
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| 1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
| 2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.b"> | 2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.c"> |
| 3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description> | 3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description> |
| 4 | 4 |
| 5 <macros> | 5 <macros> |
| 6 <import>edgeR_macros.xml</import> | 6 <import>edgeR_macros.xml</import> |
| 7 </macros> | 7 </macros> |
| 8 | 8 |
| 9 <requirements> | 9 <requirements> |
| 10 <requirement type="package" version="1.0.0">edger_dge_table_to_bedgraph</requirement> | 10 <requirement type="package" version="2.7">python</requirement> |
| 11 </requirements> | 11 </requirements> |
| 12 | 12 |
| 13 <command> | 13 <command> |
| 14 edger_dge_table_to_bedgraph | 14 python '${__tool_directory__}/bin/edger_dge_table_to_bedgraph' |
| 15 -t $cpm_table | 15 -t $cpm_table |
| 16 -g $geneset | 16 -g $geneset |
| 17 | 17 |
| 18 #if $logfc: | 18 #if $logfc: |
| 19 -c3 $logfc | 19 -c3 $logfc |