Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison edgeR_Convert_DGE_Table_to_Bedgraph.xml @ 2:ec951a5017f8 draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit a6cf3ec153ca4a3846258a223d287ca125eea7be
| author | yhoogstrate |
|---|---|
| date | Tue, 01 Sep 2015 09:15:07 -0400 |
| parents | a4a4c88783ea |
| children | 31a23ae7c61e |
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| 1:a4a4c88783ea | 2:ec951a5017f8 |
|---|---|
| 1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
| 2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0"> | 2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.b"> |
| 3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description> | 3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description> |
| 4 | 4 |
| 5 <macros> | 5 <macros> |
| 6 <import>edgeR_macros.xml</import> | 6 <import>edgeR_macros.xml</import> |
| 7 </macros> | 7 </macros> |
| 8 | 8 |
| 9 <requirements> | 9 <requirements> |
| 10 <requirement type="package" version="1.0.0">edger_dge_table_to_bedgraph</requirement> | 10 <requirement type="package" version="1.0.0">edger_dge_table_to_bedgraph</requirement> |
| 11 </requirements> | 11 </requirements> |
| 12 | 12 |
| 13 <command interpreter="python"> | 13 <command> |
| 14 edger_dge_table_to_bedgraph | 14 edger_dge_table_to_bedgraph |
| 15 -t $cpm_table | 15 -t $cpm_table |
| 16 -g $geneset | 16 -g $geneset |
| 17 | 17 |
| 18 #if $logfc: | 18 #if $logfc: |