comparison edgeR_Design_from_Expression_Matrix.xml @ 2:ec951a5017f8 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit a6cf3ec153ca4a3846258a223d287ca125eea7be

1:a4a4c88783ea

    
    <requirements>
        <requirement type="package" version="1.0.0">design_matrix_creator</requirement>
    </requirements>
    
    <command interpreter="python">
        design_matrix_creator
            -c $expression_matrix
            
            #set $unique_columns = []
            #for $factor in $treatments:

#####################################

Overview
--------

Create a design matrix by selecting the desired patients from an
expression matrix.

Input
-----

**References**

The test data is coming from:  doi: 10.1093/bioinformatics/btt688.
http://www.ncbi.nlm.nih.gov/pubmed/24319002

@CONTACT@
    </help>
    
    <expand macro="citations" />

2:ec951a5017f8

    
    <requirements>
        <requirement type="package" version="1.0.0">design_matrix_creator</requirement>
    </requirements>
    
    <command>
        design_matrix_creator
            -c $expression_matrix
            
            #set $unique_columns = []
            #for $factor in $treatments:

#####################################

Overview
--------

Create a design matrix by selecting the desired patients from an expression matrix.

Input
-----

@CONTACT@
    </help>
    
    <expand macro="citations" />