Mercurial > repos > yhoogstrate > edger_with_design_matrix

diff edgeR_Convert_DGE_Table_to_Bedgraph.xml @ 8:31a23ae7c61e draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/edger_with_design_matrix commit eb5cd7834861d8ddbffce974ed0ca6f1c0ecccf2
author erasmus-medical-center
date Tue, 14 Feb 2017 10:01:51 -0500
parents ec951a5017f8
children
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--- a/edgeR_Convert_DGE_Table_to_Bedgraph.xml	Wed Feb 08 10:28:17 2017 -0500
+++ b/edgeR_Convert_DGE_Table_to_Bedgraph.xml	Tue Feb 14 10:01:51 2017 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-    <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.b">
+    <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.c">
     <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description>
     
     <macros>
@@ -7,11 +7,11 @@
     </macros>
     
     <requirements>
-        <requirement type="package" version="1.0.0">edger_dge_table_to_bedgraph</requirement>
+        <requirement type="package" version="2.7">python</requirement>
     </requirements>
     
     <command>
-        edger_dge_table_to_bedgraph
+        python '${__tool_directory__}/bin/edger_dge_table_to_bedgraph'
             -t $cpm_table
             -g $geneset