Mercurial > repos > yhoogstrate > ega_download_streamer
diff ega_download_streamer.xml @ 4:42fbce72bc07 draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper commit b05c45b7b2a6a7c9cace195707f0609b1a1ed20a
author | yhoogstrate |
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date | Tue, 21 Jun 2016 09:51:55 -0400 |
parents | a1f6611f0533 |
children |
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--- a/ega_download_streamer.xml Tue Mar 29 07:44:25 2016 -0400 +++ b/ega_download_streamer.xml Tue Jun 21 09:51:55 2016 -0400 @@ -113,13 +113,15 @@ <help> **What it does** -Individual files or whole datasets may be downloaded from European Genome-phenome Archive (EGA) in a secure manner by first placing a download request and then downloading the file/s associated with the request. All files are automatically encrypted prior to streaming and must be decrypted using the streamer after download is complete. +Individual files or whole datasets may be downloaded from European Genome-phenome Archive (EGA) in a secure manner by first placing a download request and then downloading the file/s associated with the request. All files are automatically encrypted prior to streaming and shall be decrypted using the streamer after downloading has completed. -To download a given dataset, the user should provide the corresponding EGA file identifier (e.g. EGAF00001059069). +**How to use** + +When you load the tool in galaxy, the user should provide the corresponding EGA file identifier (e.g. EGAF00001059069). **Configuration** -The admin has to configure the server such that the environment variables $user and $pass are exported and reflect the credentials of the EGA account. The user and password shall not be visible to users. This can also be done in the config/jobs_conf.xml file. +The admin has to configure a generic account, further described in the README: https://raw.githubusercontent.com/ErasmusMC-Bioinformatics/ega_client_galaxy_wrapper/master/README.rst https://www.ebi.ac.uk/ega/about/your_EGA_account/download_streaming_client </help>