diff featurecounts.xml @ 1:63bd455ed299 draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/featurecounts commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty

--- a/featurecounts.xml	Mon May 18 04:49:19 2015 -0400
+++ b/featurecounts.xml	Mon Jun 01 07:18:31 2015 -0400
@@ -39,7 +39,7 @@
 					#end if
 					
 					-o "$output"
-					-T $threads
+					-T \${GALAXY_SLOTS:-2}
 					
 					#if $extended_parameters.parameters == "extended"
 						-t $extended_parameters.gff_feature_type
@@ -148,8 +148,6 @@
 			<option value="bed">BED format (line per exon): chr "\t" start "\t" stop "\t" description "\t" readcount (tab-delimited)</option>
 		</param>
 		
-		<param name="threads" type="integer" value="2" min="1" label="Number of the CPU threads. Higher numbers only make sense with a higher number of samples." />
-		
 		<conditional name="extended_parameters">
 			<param name="parameters" type="select" label="featureCounts parameters" help="For more advanced featureCounts settings.">
 				<option value="default">Default settings</option>