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annotate test-data/fusion-map.txt @ 2:86526900cb8f draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2
author yhoogstrate
date Mon, 12 Oct 2015 04:17:07 -0400
parents a4cfaa0e3e5d
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a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
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1 FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift
a4cfaa0e3e5d planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
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2 FUS_26799002_2222102817(--) -- 1 26799003 12 56527458
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3 FUS_27652879_2794310094(-+) -+ 1 27652880 17 79477135
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4 FUS_27677421_1106763499(--) -- 1 27677422 6 44221420
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5 FUS_52818775_491865792(++) ++ 1 52818776 2 242615169
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6 FUS_109756747_2844503161(++) ++ 1 109756748 18 48474938
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7 FUS_162336993_162351680(++) ++ 1 162336994 1 162351681
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9 FUS_260933576_260947203(++) ++ 2 11682953 2 11696580
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10 FUS_317729880_2671195661(--) -- 2 68479257 16 46717518
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11 FUS_431341885_488240973(++) ++ 2 182091262 2 238990350
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20 FUS_688959544_1831692166(-+) -+ 3 196509497 X 151302279
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21 FUS_690560141_1289758805(-+) -+ 4 87630 7 56101654
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23 FUS_950027061_1496638003(+-) +- 5 68400246 8 103842164
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24 FUS_1021452375_1022860816(+-) +- 5 139825560 5 141234001
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25 FUS_1093233534_2218149952(-+) -+ 6 30691455 12 52574593
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26 FUS_1096426187_3038889284(--) -- 6 33884108 21 42629253
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27 FUS_1136770263_2286212600(++) ++ 6 74228184 12 120637241
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30 FUS_1233435659_2723113969(--) -- 6 170893580 17 8281010
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37 FUS_1518347105_2752899136(--) -- 8 125551266 17 38066177
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38 FUS_1536899619_2586923912(++) ++ 8 144103780 15 64977161
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39 FUS_1625744006_2750144109(-+) -+ 9 86584135 17 35311150
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40 FUS_1654638612_1662879517(--) -- 9 115478741 9 123719646
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43 FUS_1799397243_2485431458(+-) +- X 119007356 14 70834275
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44 FUS_1900761185_1900785540(++) ++ 10 5727138 10 5751493
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45 FUS_1908751091_1908769529(++) ++ 10 13717044 10 13735482
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46 FUS_2018880080_2591692014(--) -- 10 123846033 15 69745263
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47 FUS_2041405408_2909026952(-+) -+ 11 10836577 19 34921481
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48 FUS_2088954897_2955778536(-+) -+ 11 58386066 20 22544041
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49 FUS_2123194535_2562850433(++) ++ 11 92625704 15 40903682
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50 FUS_2172555288_2751715570(--) -- 12 6979929 17 36882611
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51 FUS_2217352725_2217359993(++) ++ 12 51777366 12 51784634
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53 FUS_2345398656_2640249892(-+) -+ 13 45971393 16 15771749
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56 FUS_2451742910_2913912193(-+) -+ 14 37145727 19 39806722
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