Mercurial > repos > yhoogstrate > fuma

annotate test-data/edgren_fusion-map.txt @ 9:b21145d59d9c draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/fuma commit 7bf6f3629e96bcaaed8770badd11366889efa99c
author erasmusmc
date Mon, 23 Jan 2017 09:41:08 -0500
parents 4966079d474b
children
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4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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1 FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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2 FUS_26799002_2222102817(--) -- 1 26799003 12 56527458
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3 FUS_27652879_2794310094(-+) -+ 1 27652880 17 79477135
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4 FUS_27677421_1106763499(--) -- 1 27677422 6 44221420
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5 FUS_52818775_491865792(++) ++ 1 52818776 2 242615169
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6 FUS_109756747_2844503161(++) ++ 1 109756748 18 48474938
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7 FUS_162336993_162351680(++) ++ 1 162336994 1 162351681
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8 FUS_204162041_204183009(++) ++ 1 204162042 1 204183010
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9 FUS_260933576_260947203(++) ++ 2 11682953 2 11696580
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10 FUS_317729880_2671195661(--) -- 2 68479257 16 46717518
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11 FUS_431341885_488240973(++) ++ 2 182091262 2 238990350
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12 FUS_468401284_468407812(++) ++ 2 219150661 2 219157189
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13 FUS_481827274_1095808311(-+) -+ 2 232576651 6 33266232
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14 FUS_535356398_535379077(++) ++ 3 42906351 3 42929030
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15 FUS_564945819_2208207316(++) ++ 3 72495772 12 42631957
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16 FUS_622049449_622062384(++) ++ 3 129599402 3 129612337
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17 FUS_641333884_641344084(++) ++ 3 148883837 3 148894037
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18 FUS_642753372_2640297172(++) ++ 3 150303325 16 15819029
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19 FUS_650628845_650704928(++) ++ 3 158178798 3 158254881
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20 FUS_688959544_1831692166(-+) -+ 3 196509497 X 151302279
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21 FUS_690560141_1289758805(-+) -+ 4 87630 7 56101654
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22 FUS_844223288_2907008396(--) -- 4 153750777 19 32902925
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23 FUS_950027061_1496638003(+-) +- 5 68400246 8 103842164
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24 FUS_1021452375_1022860816(+-) +- 5 139825560 5 141234001
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25 FUS_1093233534_2218149952(-+) -+ 6 30691455 12 52574593
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26 FUS_1096426187_3038889284(--) -- 6 33884108 21 42629253
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27 FUS_1136770263_2286212600(++) ++ 6 74228184 12 120637241
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28 FUS_1136770312_2883379228(-+) -+ 6 74228233 19 9273757
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29 FUS_1136770987_1980946407(+-) +- 6 74228908 10 85912360
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30 FUS_1233435659_2723113969(--) -- 6 170893580 17 8281010
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31 FUS_1309258884_2298001199(++) ++ 7 75601733 12 132425840
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32 FUS_1325089044_1999508485(+-) +- 7 91431893 10 104474438
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33 FUS_1472280885_2753298497(--) -- 8 79485046 17 38465538
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34 FUS_1518347105_2752895197(--) -- 8 125551266 17 38062238
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35 FUS_1518347105_2752895483(--) -- 8 125551266 17 38062524
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36 FUS_1518347105_2752896199(--) -- 8 125551266 17 38063240
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37 FUS_1518347105_2752899136(--) -- 8 125551266 17 38066177
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38 FUS_1536899619_2586923912(++) ++ 8 144103780 15 64977161
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39 FUS_1625744006_2750144109(-+) -+ 9 86584135 17 35311150
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40 FUS_1654638612_1662879517(--) -- 9 115478741 9 123719646
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41 FUS_1669121216_1669132845(++) ++ 9 129961345 9 129972974
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42 FUS_1670521420_3062528544(++) ++ 9 131361549 22 18138593
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43 FUS_1799397243_2485431458(+-) +- X 119007356 14 70834275
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44 FUS_1900761185_1900785540(++) ++ 10 5727138 10 5751493
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45 FUS_1908751091_1908769529(++) ++ 10 13717044 10 13735482
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46 FUS_2018880080_2591692014(--) -- 10 123846033 15 69745263
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47 FUS_2041405408_2909026952(-+) -+ 11 10836577 19 34921481
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48 FUS_2088954897_2955778536(-+) -+ 11 58386066 20 22544041
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49 FUS_2123194535_2562850433(++) ++ 11 92625704 15 40903682
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50 FUS_2172555288_2751715570(--) -- 12 6979929 17 36882611
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51 FUS_2217352725_2217359993(++) ++ 12 51777366 12 51784634
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52 FUS_2220354100_2220360378(++) ++ 12 54778741 12 54785019
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53 FUS_2345398656_2640249892(-+) -+ 13 45971393 16 15771749
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54 FUS_2412983948_2413096340(++) ++ 13 113556685 13 113669077
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56 FUS_2451742910_2913912193(-+) -+ 14 37145727 19 39806722
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57 FUS_2489891478_2508003573(+-) +- 14 75294295 14 93406390
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58 FUS_2749696310_2772065451(++) ++ 17 34863351 17 57232492
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61 FUS_2752428377_2763381348(-+) -+ 17 37595418 17 48548389
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63 FUS_2774302297_2774962857(-+) -+ 17 59469338 17 60129898
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65 FUS_2788733755_2966381512(-+) -+ 17 73900796 20 33147017
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69 FUS_2979600181_2980773042(+-) +- 20 46365686 20 47538547
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