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annotate test-data/edgren_true_positives.txt @ 9:b21145d59d9c draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/fuma commit 7bf6f3629e96bcaaed8770badd11366889efa99c
author erasmusmc
date Mon, 23 Jan 2017 09:41:08 -0500
parents 4966079d474b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
yhoogstrate
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1 FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
yhoogstrate
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2 Edgren_ACACA_STAC2 -- chr17 35604416 chr17 37374457
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
yhoogstrate
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3 Edgren_ANKHD1_PCDH1 +- chr5 139855281 chr5 141245875
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
yhoogstrate
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4 Edgren_BSG_NFIX ++ chr19 577395 chr19 13158016
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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5 Edgren_CCDC85C_SETD3 -- chr14 100023983 chr14 99905650
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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6 Edgren_CPNE1_PI3 -+ chr20 34233416 chr20 43804351
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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7 Edgren_CSE1L_ENSG00000236127 ++ chr20 47688169 chr20 47951036
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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8 Edgren_CYTH1_EIF3H -- chr17 76724255 chr8 117716767
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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9 Edgren_DHX35_ITCH ++ chr20 37629654 chr20 33025120
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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10 Edgren_DIDO1_KIAA0406 -- chr20 61539197 chr20 36636628
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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11 Edgren_GLB1_CMTM7 -+ chr3 33088411 chr3 32478861
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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12 Edgren_LAMP1_MCF2L2 +- chr13 113964772 chr3 183021199
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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13 Edgren_NFS1_PREX1 -- chr20 34271629 chr20 47342605
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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14 Edgren_NOTCH1_NUP214 -+ chr9 139414605 chr9 134055503
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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15 Edgren_PPP1R12A_SEPT10 -- chr12 80248292 chr2 110336171
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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16 Edgren_RAB22A_MYO9B ++ chr20 56913658 chr19 17255969
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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17 Edgren_RARA_PKIA ++ chr17 38489269 chr8 79472938
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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18 Edgren_RPS6KB1_SNF8 +- chr17 57999186 chr17 47014579
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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19 Edgren_SKA2_MYO19 -- chr17 57209971 chr17 34875381
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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20 Edgren_STARD3_DOK5 ++ chr17 37806528 chr20 53179923
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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21 Edgren_SUMF1_LRRFIP2 -- chr3 4125732 chr3 37159649
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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22 Edgren_TATDN1_GSDMB -- chr8 125526213 chr17 38068478
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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23 Edgren_VAPB_IKZF3 +- chr20 56995168 chr17 37970820
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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24 Edgren_WDR67_ZNF704 +- chr8 124096521 chr8 81733797
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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25 Edgren_ZMYND8_CEP250 -+ chr20 45911713 chr20 34071395
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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26 Edgren_BCAS4_BCAS3 ++ chr20 49452573 chr17 59112507
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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27 Edgren_ARFGEF2_SULF2 +- chr20 47595829 chr20 46350226
4966079d474b planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
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28 Edgren_RPS6KB1_TMEM49 ++ chr17 57999186 chr17 57851408