Mercurial > repos > yhoogstrate > fuma
comparison test-data/edgren_true_positives.txt @ 3:4966079d474b draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
| author | yhoogstrate |
|---|---|
| date | Tue, 20 Oct 2015 10:12:08 -0400 |
| parents | |
| children |
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| 2:86526900cb8f | 3:4966079d474b |
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| 1 FusionID all.UniqueCuttingPositionCount all.SeedCount all.RescuedCount Strand Chromosome1 Position1 Chromosome2 Position2 KnownGene1 KnownTranscript1 KnownExonNumber1 KnownTranscriptStrand1 KnownGene2 KnownTranscript2 KnownExonNumber2 KnownTranscriptStrand2 FusionJunctionSequence SplicePattern FusionGene FrameShift | |
| 2 Edgren_ACACA_STAC2 -- chr17 35604416 chr17 37374457 | |
| 3 Edgren_ANKHD1_PCDH1 +- chr5 139855281 chr5 141245875 | |
| 4 Edgren_BSG_NFIX ++ chr19 577395 chr19 13158016 | |
| 5 Edgren_CCDC85C_SETD3 -- chr14 100023983 chr14 99905650 | |
| 6 Edgren_CPNE1_PI3 -+ chr20 34233416 chr20 43804351 | |
| 7 Edgren_CSE1L_ENSG00000236127 ++ chr20 47688169 chr20 47951036 | |
| 8 Edgren_CYTH1_EIF3H -- chr17 76724255 chr8 117716767 | |
| 9 Edgren_DHX35_ITCH ++ chr20 37629654 chr20 33025120 | |
| 10 Edgren_DIDO1_KIAA0406 -- chr20 61539197 chr20 36636628 | |
| 11 Edgren_GLB1_CMTM7 -+ chr3 33088411 chr3 32478861 | |
| 12 Edgren_LAMP1_MCF2L2 +- chr13 113964772 chr3 183021199 | |
| 13 Edgren_NFS1_PREX1 -- chr20 34271629 chr20 47342605 | |
| 14 Edgren_NOTCH1_NUP214 -+ chr9 139414605 chr9 134055503 | |
| 15 Edgren_PPP1R12A_SEPT10 -- chr12 80248292 chr2 110336171 | |
| 16 Edgren_RAB22A_MYO9B ++ chr20 56913658 chr19 17255969 | |
| 17 Edgren_RARA_PKIA ++ chr17 38489269 chr8 79472938 | |
| 18 Edgren_RPS6KB1_SNF8 +- chr17 57999186 chr17 47014579 | |
| 19 Edgren_SKA2_MYO19 -- chr17 57209971 chr17 34875381 | |
| 20 Edgren_STARD3_DOK5 ++ chr17 37806528 chr20 53179923 | |
| 21 Edgren_SUMF1_LRRFIP2 -- chr3 4125732 chr3 37159649 | |
| 22 Edgren_TATDN1_GSDMB -- chr8 125526213 chr17 38068478 | |
| 23 Edgren_VAPB_IKZF3 +- chr20 56995168 chr17 37970820 | |
| 24 Edgren_WDR67_ZNF704 +- chr8 124096521 chr8 81733797 | |
| 25 Edgren_ZMYND8_CEP250 -+ chr20 45911713 chr20 34071395 | |
| 26 Edgren_BCAS4_BCAS3 ++ chr20 49452573 chr17 59112507 | |
| 27 Edgren_ARFGEF2_SULF2 +- chr20 47595829 chr20 46350226 | |
| 28 Edgren_RPS6KB1_TMEM49 ++ chr17 57999186 chr17 57851408 |