comparison fuma.xml @ 7:ec04b7552167 draft

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 811623bf945377481ed49f83e4dc4d08e83103c5

6:e2934c4b0814

UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser.

    ]]></help>
    
    <citations>
        <citation type="bibtex">
           @article{fuma,
              author       = { Hoogstrate, Youri and Böttcher, René and Hiltemann, Saskia and van der Spek, Peter J. and Stubbs, Andrew P. }, 
              title        = {FuMa: reporting overlap in RNA-seq detected fusion genes},
              url          = { https://github.com/yhoogstrate/fuma }
            }
        </citation>
    </citations>
</tool>

7:ec04b7552167

UCSC genome browser provides a very simple way of obtaining BED files with one gene per line by selecting their *RefSeq Genes*-track and *knownGene*-table and putting the export format to BED. Galaxy should have a built-in UCSC table browser.

    ]]></help>
    
    <citations>
        <citation type="doi">10.1093/bioinformatics/btv721</citation>
    </citations>
</tool>