Mercurial > repos > yhoogstrate > fuma

diff fuma.xml @ 3:4966079d474b draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/fuma_galaxy_wrapper commit 3da3fcc0204205d4899763f9fe63edf9aa16d5a2-dirty
author yhoogstrate
date Tue, 20 Oct 2015 10:12:08 -0400
parents 86526900cb8f
children cb0543909e83
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line diff
--- a/fuma.xml	Mon Oct 12 04:17:07 2015 -0400
+++ b/fuma.xml	Tue Oct 20 10:12:08 2015 -0400
@@ -113,22 +113,22 @@
     <tests>
         <test>
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_0|sample" value="chimerascan.txt" ftype="tabular" />
+                <param name="datasets_0|sample" value="edgren_chimerascan.txt" ftype="tabular" />
                 <param name="datasets_0|format" value="chimerascan" />
                 <param name="datasets_0|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_1|sample" value="defuse.txt" ftype="tabular" />
+                <param name="datasets_1|sample" value="edgren_defuse.txt" ftype="tabular" />
                 <param name="datasets_1|format" value="defuse" />
                 <param name="datasets_1|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_2|sample" value="fusion-map.txt" ftype="tabular" />
+                <param name="datasets_2|sample" value="edgren_fusion-map.txt" ftype="tabular" />
                 <param name="datasets_2|format" value="fusionmap" />
                 <param name="datasets_2|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_3|sample" value="edgren_tp.txt" ftype="tabular" />
+                <param name="datasets_3|sample" value="edgren_true_positives.txt" ftype="tabular" />
                 <param name="datasets_3|format" value="fusionmap" />
                 <param name="datasets_3|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
@@ -140,26 +140,26 @@
             <param name="acceptor_donor_order_specific_matchig" value="--acceptor-donor-order-specific-matching" />
             <param name="output_format" value="list_boolean" />
             
-            <output name="fuma_overview" file="output_test_1.txt" />
+            <output name="fuma_overview" file="edgren_test_01_specifc_matching_output.txt" />
         </test>
         <test>
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_0|sample" value="chimerascan.txt" ftype="tabular" />
+                <param name="datasets_0|sample" value="edgren_chimerascan.txt" ftype="tabular" />
                 <param name="datasets_0|format" value="chimerascan" />
                 <param name="datasets_0|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_1|sample" value="defuse.txt" ftype="tabular" />
+                <param name="datasets_1|sample" value="edgren_defuse.txt" ftype="tabular" />
                 <param name="datasets_1|format" value="defuse" />
                 <param name="datasets_1|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_2|sample" value="fusion-map.txt" ftype="tabular" />
+                <param name="datasets_2|sample" value="edgren_fusion-map.txt" ftype="tabular" />
                 <param name="datasets_2|format" value="fusionmap" />
                 <param name="datasets_2|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
             <!-- <repeat name="datasets"> -->
-                <param name="datasets_3|sample" value="edgren_tp.txt" ftype="tabular" />
+                <param name="datasets_3|sample" value="edgren_true_positives.txt" ftype="tabular" />
                 <param name="datasets_3|format" value="fusionmap" />
                 <param name="datasets_3|gene_annotation" value="refseq_genes_hg19.bed" ftype="bed" />
             <!-- </repeat> -->
@@ -171,7 +171,7 @@
             <param name="acceptor_donor_order_specific_matchig" value="" />
             <param name="output_format" value="list_boolean" />
             
-            <output name="fuma_overview" file="output_test_2.txt" />
+            <output name="fuma_overview" file="edgren_test_02_unspecifc_matching_output.txt" />
         </test>
     </tests>