Mercurial > repos > yhoogstrate > fuma

diff tool_dependencies.xml @ 0:a4cfaa0e3e5d draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/fuma commit f56125b28ec44aa28943ed040b7b202fed9c875b-dirty
author yhoogstrate
date Thu, 21 May 2015 09:56:41 -0400
parents
children 54ce44828e1b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 21 09:56:41 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+	<package name="fuma" version="2.7.1">
+		<install version="1.0">
+			<actions>
+				<action type="make_directory">$INSTALL_DIR/lib/python</action>
+				<action type="make_directory">$INSTALL_DIR/lib64/python</action>
+				
+				<action type="shell_command">
+					git clone https://github.com/yhoogstrate/fuma.git fuma &amp;&amp;
+					cd fuma &amp;&amp;
+					git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 &amp;&amp;
+					
+					export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp;
+					python setup.py build &amp;&amp;
+					python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
+				</action>
+				
+				<action type="set_environment">
+					<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+				</action>
+			</actions>
+		</install>
+		<readme>
+			Downloads and installs Fuma; requires python pip and get to be installed.
+		</readme>
+	</package>
+</tool_dependency>