comparison tool_dependencies.xml @ 0:600e51134f8d draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60

0:600e51134f8d

<?xml version="1.0"?>
<tool_dependency>
    <package name="featurecounts" version="1.4.6.p5">
        <install version="1.0">
            <actions>
                <action type="download_by_url"
                    sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action>
                <action type="shell_command"><![CDATA[
                    cd src/ && make -f Makefile.Linux
                ]]></action>
                <action type="move_file">
                    <source>bin/featureCounts</source>
                    <destination>$INSTALL_DIR/bin/</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Downloads and installs featureCounts.
            http://bioinf.wehi.edu.au/featureCounts/
        </readme>
    </package>
</tool_dependency>