Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6_p5

diff tool_dependencies.xml @ 0:600e51134f8d draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit 597fa3df643b54ea93a17448c722f657e3d68b60
author yhoogstrate
date Wed, 07 Oct 2015 11:37:42 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Oct 07 11:37:42 2015 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="featurecounts" version="1.4.6.p5">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url"
+                    sha256sum="8292ff6420356a5560c4a07f876f785622abbcae9fa54ef6750d102f40f78315">http://downloads.sourceforge.net/project/subread/subread-1.4.6-p5/subread-1.4.6-p5-source.tar.gz</action>
+                <action type="shell_command"><![CDATA[
+                    cd src/ && make -f Makefile.Linux
+                ]]></action>
+                <action type="move_file">
+                    <source>bin/featureCounts</source>
+                    <destination>$INSTALL_DIR/bin/</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Downloads and installs featureCounts.
+            http://bioinf.wehi.edu.au/featureCounts/
+        </readme>
+    </package>
+</tool_dependency>