annotate tool_dependencies.xml @ 0:d728db4c0214 draft default tip

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty

<?xml version="1.0"?>
<tool_dependency>
	<package name="htseq" version="0.6.1">
		<repository changeset_revision="5b3da3e3543d" name="package_htseq_0_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
	</package>
	
	<package name="fuma" version="2.7.1">
		<install version="1.0">
			<actions>
				<action type="set_environment_for_install">
					<repository changeset_revision="5b3da3e3543d" name="package_htseq_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
						<package name="htseq" version="0.6.1" />
					</repository>
				</action>
				
				<action type="make_directory">$INSTALL_DIR/lib/python</action>
				<action type="make_directory">$INSTALL_DIR/lib64/python</action>
				
				<action type="shell_command">
					git clone https://github.com/yhoogstrate/fuma.git fuma							&amp;&amp;
					cd fuma																			&amp;&amp;
					git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675						&amp;&amp;
					
					export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python	&amp;&amp;
					python setup.py build															&amp;&amp;
					python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
				</action>
				
				<action type="set_environment">
					<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
				</action>
			</actions>
		</install>
		<readme>
			Downloads and installs FuMa. Prerequisites:
				- git
		</readme>
	</package>
</tool_dependency>