# HG changeset patch
# User yhoogstrate
# Date 1438335764 14400
# Node ID f8fecf1f6eba60f061525b003012e4572e6952fb
# Parent  b8d22acd3017c8aa9a2521c0006cff5dc10dd2fe
Uploaded

diff -r b8d22acd3017 -r f8fecf1f6eba tool_dependencies.xml
--- a/tool_dependencies.xml	Thu May 21 07:22:19 2015 -0400
+++ b/tool_dependencies.xml	Fri Jul 31 05:42:44 2015 -0400
@@ -1,39 +1,31 @@
 <?xml version="1.0"?>
 <tool_dependency>
-	<package name="ez_setup" version="0.9">
-		<!--
-			If cross-toolshed depenencies become allowed use the following:
-			<repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-		-->
-		<repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-	</package>
-	
-	<package name="pysam" version="0.8.2.1">
-		<install version="1.0">
-			<actions>
-				<action md5sum="daf63c1665fa601fc942f050f334a627" type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action>
-				<action type="set_environment_for_install">
-					<!--
-						If cross-toolshed depenencies become allowed use the following:
-						<repository changeset_revision="f50b27b88d30" name="package_ez_setup_0_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-					-->
-					<repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
-						<package name="ez_setup" version="0.9" />
-					</repository>
-				</action>
-				<action type="make_directory">$INSTALL_DIR/lib/python</action>
-				<action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
-				<action type="set_environment">
-					<environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
-					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-					<environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
-					<environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
-				</action>
-			</actions>
-		</install>
-		<readme>
-			Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
-			The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library.
-		</readme>
-	</package>
+    <package name="ez_setup" version="0.9">
+        <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    
+    <package name="pysam" version="0.8.2.1">
+        <install version="1.0">
+            <actions>
+                <action md5sum="daf63c1665fa601fc942f050f334a627" type="download_by_url">https://pypi.python.org/packages/source/p/pysam/pysam-0.8.2.1.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="10fd2e2a9f2f" name="package_ez_setup_0_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="ez_setup" version="0.9" />
+                    </repository>
+                </action>
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp; python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="PYSAM_PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="PYSAM_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installation of pysam, pyrex and python are required. The installation can be accessed via PYSAM_PATH.
+            The PYSAM_PATH has to be within the PYTHONPATH to let python automatically load this library.
+        </readme>
+    </package>
 </tool_dependency>