annotate tool_dependencies.xml @ 0:f4fce0d27352 draft default tip

planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/segmentation_fold_galaxy_wrapper commit b37cb65736e2a6e76b94a9fa12a5887046437e36

<?xml version="1.0"?>
<tool_dependency>
    <package name="boost" version="1.57">
        <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="cmake" version="3.2.3">
        <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    
    <package name="segmentation-fold" version="1.0.0">
        <install version="1.0">
            <actions>
                <action type="shell_command">git clone https://github.com/yhoogstrate/segmentation-fold.git</action>
                <action type="shell_command">git reset --hard 61db54315e45f2b96a241e319d99b119b26fa072</action>
                    
                <action type="set_environment_for_install">
                    <repository changeset_revision="a0dd39685fce" name="package_boost_1_57" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="boost" version="1.57" />
                    </repository>
                </action>
                
                <action type="set_environment_for_install">
                    <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                        <package name="cmake" version="3.2.3" />
                    </repository>
                </action>
                
                <action type="shell_command">
                    cmake -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR .  &amp;&amp;
                    make                                                                    &amp;&amp;
                    make install
                </action>
                
                <action type="set_environment">
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable action="set_to" name="SEGMENTATION_FOLD_DEFAULT_XML">$INSTALL_DIR/share/segmentation-fold/segments.xml</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Installation of segmentation-fold requires:
             - git
             - libboost                     (via toolshed)
             - CMake                        (via toolshed)
             - c++11 compiler: g++ or clang
        </readme>
    </package>
</tool_dependency>